View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13480_high_6 (Length: 332)
Name: NF13480_high_6
Description: NF13480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13480_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 49654483 - 49654787
Alignment:
| Q |
18 |
agaaaactcagagtggaactggaagcaatgggttgagttcagcatctactggtgcacctgcagacactggagcagaattccagtgtccaggtcaggttgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49654483 |
agaaaactcagagtggaactggaagcaatgggttgagttcagcatctaccggtgcacctgcacacactggagcagaattccagtgtccaggtcaggttgt |
49654582 |
T |
|
| Q |
118 |
ggggcaagtgaatctcagccctacacgtcagcaatcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagatta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49654583 |
ggggcaagtgaatctcagccctacacgtcagcaatcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagatta |
49654682 |
T |
|
| Q |
218 |
tgtcccatgggaacaatgggttgtccttcttactatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49654683 |
tgtcccatgggaacaatgggttgtccttcttactatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacac |
49654782 |
T |
|
| Q |
318 |
ctttg |
322 |
Q |
| |
|
||||| |
|
|
| T |
49654783 |
ctttg |
49654787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 151 - 322
Target Start/End: Original strand, 16486263 - 16486434
Alignment:
| Q |
151 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
250 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
16486263 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
16486362 |
T |
|
| Q |
251 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
322 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16486363 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttg |
16486434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 151 - 322
Target Start/End: Complemental strand, 21816647 - 21816476
Alignment:
| Q |
151 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
250 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
21816647 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
21816548 |
T |
|
| Q |
251 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
322 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21816547 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttg |
21816476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 153
Target Start/End: Complemental strand, 14381479 - 14381448
Alignment:
| Q |
122 |
caagtgaatctcagccctacacgtcagcaatc |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
14381479 |
caagtgaatctcagccctacacgtcagcaatc |
14381448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University