View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13480_low_1 (Length: 649)
Name: NF13480_low_1
Description: NF13480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13480_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 177 - 633
Target Start/End: Original strand, 32088000 - 32088454
Alignment:
| Q |
177 |
aagggacaagtcttctggttcgcttgctctatataaacgctaaaatattttctgtttcagccgatgtgggactcaaaggcaagtgtaatagtaatatgca |
276 |
Q |
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|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32088000 |
aagggacaagccttacggttcgcttgctctatataaatgctaaaatattttctgtttcagccgatgtgggactaaaaggcaagtgtaatagtaatatgca |
32088099 |
T |
|
| Q |
277 |
tatccttctcaactttccacctgaagcaagcaagcgactcagatgtacctccctctctcagtgggttgagttttatttcagattgaaccaaagtttgtca |
376 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32088100 |
tatccttctcaactttc-acctgaagcaagcaagcgactcagatgtacctccctctc--agtgggttgagttttatttcagattgaaccaaagtttgtca |
32088196 |
T |
|
| Q |
377 |
caacatatactaactgtaatacaaagcaaactgtaatatgctcattaccctattgatcactataacggatatcgattccctgttgtcaagtaac-acact |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32088197 |
caacatatactaactgtaatacaaagcaaactgtaatatgctcattaccctattgatcactataacggatatcgattccctgttgtcaagtaaccacact |
32088296 |
T |
|
| Q |
476 |
tacgtgccgtcggtgaatttatataatttgatttcattaccctattgatcactatagcagatatcgattcatcctactacaatagcttcaatagcaccac |
575 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32088297 |
ttcgtgccgtcggtgaatttatataatttgatttcattaccctattgatcactatagcagatatcgattcatcctactacaatagcttcaatagcaccac |
32088396 |
T |
|
| Q |
576 |
ccccagaaacaaacacggagttgaaaaatctccagcctacaacatagtctcaactctc |
633 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32088397 |
ccccagaaacaaacacggagttgaaaaatctccagcctacaacatagtctcaactctc |
32088454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 183 - 465
Target Start/End: Original strand, 32095035 - 32095315
Alignment:
| Q |
183 |
caagtcttctggttcgcttgctctatataaacgctaaaatattttctgtttcagccgatgtgggactcaaaggcaagtgtaata---gtaatatgcatat |
279 |
Q |
| |
|
|||| ||| |||||||||||| ||||||| || | | ||||||| ||| |||| ||||||| |||| ||| |||||| ||||| |||| ||||| || |
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| T |
32095035 |
caagccttttggttcgcttgcagtatataatcgttgagatattttttgtgtcagtcgatgtgtgactaaaaagcaagtataataatagtaacatgcacat |
32095134 |
T |
|
| Q |
280 |
ccttctcaactttccacctgaagcaagcaagcgactcagatgtacctccctctctcagtgggttgagttttatttcagattgaaccaaagtttgtcacaa |
379 |
Q |
| |
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||| |||||||| | ||||||||||||||||||||||||||||| || |||| | | |||||||||||||| |||||||||||||||||||| || || |
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| T |
32095135 |
cctcctcaacttac-acctgaagcaagcaagcgactcagatgtatcttcctcac--attgggttgagttttagttcagattgaaccaaagttttccataa |
32095231 |
T |
|
| Q |
380 |
catatactaactgtaatacaaagcaaactgtaatatgctcattaccctattgatcactataacggatatcgattccctgttgtcaa |
465 |
Q |
| |
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|||| ||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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|
| T |
32095232 |
cata--ctaactgtaatacaaagcaaattgtactatgctcattaccctattggtcactataacggatattgattccctgttgtcaa |
32095315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 32087759 - 32087886
Alignment:
| Q |
10 |
caattacaaaggaaatacacgagttttattcgattcaataacattgttgtttctgttagtattcagatata---tattctttgcatttacattgtattaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
32087759 |
caattacaaaggaaatacacgagttttatttgattcaataacattgttgtttctgttagtattcagctatatattattctttgcatttacattgtattaa |
32087858 |
T |
|
| Q |
107 |
atgagtaaaaatcaaagagacattctga |
134 |
Q |
| |
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|||||||||||||||||||| ||||||| |
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|
| T |
32087859 |
atgagtaaaaatcaaagagaaattctga |
32087886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 177 - 320
Target Start/End: Original strand, 32089355 - 32089497
Alignment:
| Q |
177 |
aagggacaagtcttctggttcgcttgctctatataaacgctaaaatattttctgtttcagccgatgtgggactcaaaggcaagtgtaatagtaatatgca |
276 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||| |||| |||||||||||| |||||| |||||||||||| ||| |||||||||| ||| | ||||| |
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|
| T |
32089355 |
aagggacaagccttatggtttgcttgctctatatatacgccaaaatattttctatttcagtcgatgtgggactaaaaagcaagtgtaacagttacatgca |
32089454 |
T |
|
| Q |
277 |
tatccttctcaactttccacctgaagcaagcaagcgactcagat |
320 |
Q |
| |
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||||||||||||||| ||||||| |||||||||||| |||||| |
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|
| T |
32089455 |
aatccttctcaacttt-cacctgaggcaagcaagcgattcagat |
32089497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 32093112 - 32093228
Alignment:
| Q |
177 |
aagggacaagtcttctggttcgcttgctctatataaacgctaaaatattttctgtttcagccgatgtgggactcaaaggcaagtgtaatagtaatatgca |
276 |
Q |
| |
|
|||||||||| || |||||||||||| ||| |||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||| ||||| |
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| T |
32093112 |
aagggacaagcctactggttcgcttgaagtatttaaacgctgaaatattttctgtttcagacgatgtgggactaaaaagcaagtgtaatagtaacatgca |
32093211 |
T |
|
| Q |
277 |
tatccttctcaactttc |
293 |
Q |
| |
|
||||||||| |||||| |
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| T |
32093212 |
aatccttctcgactttc |
32093228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 32096843 - 32096900
Alignment:
| Q |
192 |
tggttcgcttgctctatataaacgctaaaatattttctgtttcagccgatgtgggact |
249 |
Q |
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|||||||||||| ||||||||||| | |||||||||||||||| |||||||||||| |
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|
| T |
32096843 |
tggttcgcttgcagtatataaacgcctagatattttctgtttcagtcgatgtgggact |
32096900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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