View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13480_low_10 (Length: 236)
Name: NF13480_low_10
Description: NF13480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13480_low_10 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 41572994 - 41573223
Alignment:
| Q |
1 |
ttccgccagcatcaacacctccaacttcttatacatagatttcaccatgaaaacccctttaccctccattctccaccaacaaatatcatcttctacagag |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41572994 |
ttccgctagcatcaacacctccaacttcttatacatagatttcaccatgaaaacccctttaccctccattctccaccaacaaatatcatcttctacagag |
41573093 |
T |
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| Q |
101 |
cctctaaaactctccaaatcctctaataattccgtcagtaactcattctcccaaacaaaaaggggcccctccaaacaaaggtccaattggtatccgttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41573094 |
cctctaaaactctccaaatcctctaataattccgtcagtaactcattctcccaaacaaaaaggggcccctccaaacaaaggtccaattggtatccgttgt |
41573193 |
T |
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| Q |
201 |
gttgatcgtccccacctctccaaccatcgc |
230 |
Q |
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| T |
41573194 |
gttgatcgtccccacctctccaaccatcgc |
41573223 |
T |
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Back To:
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Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 27753434 - 27753216
Alignment:
| Q |
13 |
caacacctccaacttcttatacatagatttcaccatgaaaacccctttaccctccattctccaccaacaaatatcatcttctacagagcctctaaaactc |
112 |
Q |
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| T |
27753434 |
caacaactccaacttcttatacatagatttcactgagaacaccccgttaccctccaatctccaccaccaaataccatcttctatagagcctctgaaactc |
27753335 |
T |
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| Q |
113 |
tccaaatcctctaataattccgtcagtaactcattctcccaaacaaaaa-ggggcccctccaaacaaaggtccaattggtatccgttgtgttgatcgtcc |
211 |
Q |
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| T |
27753334 |
tccaaatcttctaataattccgacagtaactcattctcccaaacaaaaagggggcgcctccaaagaaaggtccaattggtatccattgagttgatcgccc |
27753235 |
T |
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| Q |
212 |
ccacctctccaaccatcgc |
230 |
Q |
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| T |
27753234 |
ccacgtctccaaccatcgc |
27753216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 21942587 - 21942781
Alignment:
| Q |
10 |
catcaacacctccaacttcttatacatagatttcaccatgaaaacccctttaccctccattctccaccaacaaatatcatcttctacagagcctctaaaa |
109 |
Q |
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| T |
21942587 |
catcaacacctccaacttcttatacattgatttaaccgtaaaaacccctttttcctccaatctccaccgccaaaaatcatcttctatagaggatctaaaa |
21942686 |
T |
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| Q |
110 |
ctctccaaatcctctaataattccgtcagtaactcattctcccaaacaaaaag-gggcccctccaaacaaaggtccaattggtatccgttgtgtt |
203 |
Q |
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| T |
21942687 |
ctatccaactcctctaataattcaaccaatagctcgttctcccaaacaaaaagtggacgcctccaaacaaagttccaattgttacccgttgtgtt |
21942781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 188
Target Start/End: Complemental strand, 26728451 - 26728268
Alignment:
| Q |
6 |
ccagcatcaacacctccaacttcttatacatagatttcaccatgaaaacccctttaccctccattctccaccaacaaatatcatcttctacagagcctct |
105 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| | || | || || || |||| ||||||||| ||| ||| || |||| ||| ||||| |
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| T |
26728451 |
ccagcatcaacacctccaacttcttgtacatagatttcaccgtaaatccaccattcccttccaatctccaccatcaagcatcctcctctagagaccctct |
26728352 |
T |
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| Q |
106 |
aaaactctccaaatcctctaataattccgtcagtaactcattctcccaaacaaaaa-ggggcccctccaaacaaaggtccaatt |
188 |
Q |
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| T |
26728351 |
aaagccatccaagtcttgtaataattccgttagcaactcattctcccaaacaaaaagggggcgcctccaatcaaaggtccaatt |
26728268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 2018 - 1965
Alignment:
| Q |
112 |
ctccaaatcctctaataattccgtcagtaactcattctcccaaacaaaaagggg |
165 |
Q |
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| T |
2018 |
ctccaaatccgccaacaattccgttagcaaatcattctcccaaacaaaaagggg |
1965 |
T |
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