View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13480_low_14 (Length: 203)
Name: NF13480_low_14
Description: NF13480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13480_low_14 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 36462924 - 36462722
Alignment:
| Q |
11 |
gattaaaattactattaaaattatgcaggactaaaattgaaatctcgtatttttatatggattaaaaatatattttagccagnnnnnnn-------ttac |
103 |
Q |
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| T |
36462924 |
gattaaaattactattaaaattatgcaggactaaaattgaaatctcgtatttttatatgaattaaaaacatattttacccaaaaaaaaaaaaaaaattac |
36462825 |
T |
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| Q |
104 |
aagttacaaccatcataatggagaaattaatctcaattgaaacaatttcagtttttctcaatt---attacatcttaaaaagagattttcacttaattca |
200 |
Q |
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| T |
36462824 |
aagttacaaccatcataatggagaaatgaatctcaattgaaacaatttcagtttttctcaattattattacatcttaaagagagattttcacttaattca |
36462725 |
T |
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| Q |
201 |
ttt |
203 |
Q |
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||| |
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| T |
36462724 |
ttt |
36462722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 36472263 - 36472186
Alignment:
| Q |
11 |
gattaaaattactattaaaattatgcaggactaaaattgaaatctcgtatttttatatggattaaaaatatattttag |
88 |
Q |
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| T |
36472263 |
gattaaaattactattaaaattatgcaggactaaaattgaaatctcgtatttttatattgattaaaaacatattttag |
36472186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 36472187 - 36472106
Alignment:
| Q |
125 |
agaaattaatctcaattgaaacaatttcagtttttctcaatt---attacatcttaaaaagagattttcacttaattcattt |
203 |
Q |
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| T |
36472187 |
agaaatgaatctcaattgaaacaatttcagtttttctcaattattattacatcttaaagagagattttcacttaattcattt |
36472106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 36442026 - 36441986
Alignment:
| Q |
12 |
attaaaattactattaaaattatgcaggactaaaattgaaa |
52 |
Q |
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|||| ||||||||||||||||||| | |||||||||||||| |
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| T |
36442026 |
attacaattactattaaaattatgtaagactaaaattgaaa |
36441986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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