View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13480_low_2 (Length: 599)
Name: NF13480_low_2
Description: NF13480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13480_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 14 - 515
Target Start/End: Original strand, 52390569 - 52391070
Alignment:
| Q |
14 |
atcaatcttctggtaataaattcttgtattacggacacgtgtttagacttagttaggagtagttgatttggagcagggcaatttgtgtgtaacttgtccc |
113 |
Q |
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| T |
52390569 |
atcaatcttctggtaataaattcttgtattacggacacgtgtttagacttagttaggagtagttgatttggagcagggcagtttgtgtgcaacttgtccc |
52390668 |
T |
|
| Q |
114 |
tctccttgtgtcaacgctttaatttttgtaataaattcttctccaagttgcattttctattcgtctttggtttatgtatcatttgtcaagaaaaccatct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
52390669 |
tctccttgtgtcaacgctttaatttttgtaataaattcttctccaagttgcattttctattcgtctttagtttatgtgtcatttgtcaagaaaaccatct |
52390768 |
T |
|
| Q |
214 |
tcaaactaatgtataatgcctgaaagcgatgaaaattacgttaataggcatacacaattgcagtttgatgagatggaagtgttgcaataattgcagctca |
313 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52390769 |
tcaaactaatgcataatgcctgaaagcgatgaaaactacgttaatagccatacataattgcagtttgatgagatggaagtgttgcaataattgcatctca |
52390868 |
T |
|
| Q |
314 |
atgctatactagttgctttgtttcataaacattttttaagctgtaacttgtgcaatgattcaagggtagagaaaatatatatggatgcagctaacaatat |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52390869 |
atgctatactagttgctttgtttcataaacattttttaagctgtaacttttgcaatgattcaagggtagagaaaatatatatggatgcagctaacaatat |
52390968 |
T |
|
| Q |
414 |
taacggctggcatatccactattaaatgtaagaaaggcgtgtattatatagaaaagaatgttgtagcttgctgataattgacatgatagacacactacca |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52390969 |
taacggctggcatatccactattaaatgtaagaaaggcgtgtattatatagaaaagaatgttgtagcttgctgataattgacatgatagacacactacca |
52391068 |
T |
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| Q |
514 |
aa |
515 |
Q |
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| T |
52391069 |
aa |
52391070 |
T |
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