View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13480_low_3 (Length: 423)
Name: NF13480_low_3
Description: NF13480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13480_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 420
Target Start/End: Complemental strand, 6285877 - 6285471
Alignment:
| Q |
16 |
cacattgtatattgcagtcacagtcattttttgtcaatctctaatgatgtacaatacgttaaaacaaccaacatcatcacacacttaaagacaaacatat |
115 |
Q |
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| T |
6285877 |
cacattgtatattgcagtcacagtcattttttgtcaatctctaatgatgtacaatacgttaaaacaaccaacatcatcacacacttaaagacaaacatat |
6285778 |
T |
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| Q |
116 |
acaacataggtaataactttcaccaataagatcaatacatatatgatataaatgcatgttaccaacatgcattgtaaactcaaa--ctaaaagaaaccaa |
213 |
Q |
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| T |
6285777 |
acaacataggtaataactttcaccaataagatcaatacatatatgatataaatgcatgttaccaacatgcattgtaaactcaaaaactaaaagaaaccaa |
6285678 |
T |
|
| Q |
214 |
aacatgggatctatttctgaagatattcatgttcttccaaaatgttcaccttttgaagtagaagaagatgatgatgcatgtctctctgctatgcttcttt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6285677 |
aacatgggatctatttctgaagatattcatgttcttccaaaatgttcaccttttgaagtagtagaagatgatgatgcatgtctctctgctatgcttcttt |
6285578 |
T |
|
| Q |
314 |
gttgtggtccaatgatttatacttctgtgttaaaatctgccattgaattaaacctatttgatattatatcaaaggtaaatccaccaggtgtttcagcatc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6285577 |
gttgtggtccaatgatttatacttctgtgttaaaatctgcaattgaattaaacctatttgatattatatcaaaggcaaatccaccaggtgtttcagcatc |
6285478 |
T |
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| Q |
414 |
ctatgtt |
420 |
Q |
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| T |
6285477 |
ctatgtt |
6285471 |
T |
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