View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13480_low_4 (Length: 387)
Name: NF13480_low_4
Description: NF13480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13480_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 2570583 - 2570929
Alignment:
| Q |
11 |
tccaagaatatctcagaattacagaaaagtactttatccaacaaatatatgatccnnnnnnnnnnnnnnnnnngagttgctaggtaccaacctccactga |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2570583 |
tccaataatatctcagaattacagaaaagtactttatccaacaaatctatgatccaaaaaa------------gagttgctaggtaccaacctccactga |
2570670 |
T |
|
| Q |
111 |
aagagaaaccatcaccaacagaaataggagcatccagaagataatcatcctgcagcattggaaacaaagtatcaagaggtaaagctgataaatacaagcc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2570671 |
aagagaaaccatcaccaacagaaataggagcatccagaagataatcatcctgcagcattggaaacaaagtatcaagaggtaaagctgataaatacaagcc |
2570770 |
T |
|
| Q |
211 |
attaacactaagacacaaactttgtctccatttgaagtactacagttcagcttcagtgtcttccttgaagggaaacgctttgtggaacaagattgaaggt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2570771 |
attaacactaagacacaaactttgtctccatttgaagtactacagttcagcttcagtgtcttccttgaagggaaacgctttgtggaacaagattgaaggt |
2570870 |
T |
|
| Q |
311 |
gagaatggaagtaacaagaagaagaagcatgaaaagcttgaatggtcattgcatgaaag |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2570871 |
gagaatggaagtaacaagaagaagaagcatgaaaagcttgaatggtcattgcatgaaag |
2570929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University