View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13480_low_5 (Length: 352)
Name: NF13480_low_5
Description: NF13480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13480_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 33159365 - 33159060
Alignment:
| Q |
14 |
aaatcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33159365 |
aaatcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacc |
33159266 |
T |
|
| Q |
114 |
tccacaaatgatgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacgnnnnnnnnnnnnctttctcaatttaaacttgtcaacaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33159265 |
tccacaaatgatgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacg--ttttttttttctttctcaatttaaacttgtcaacaa |
33159168 |
T |
|
| Q |
214 |
tgaagagaatggacaatatattaaacttctagaaataatatgcactggatatgtaaaaaagctttgtcacaaacataattatgtttcacaatataggtaa |
313 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33159167 |
taaagagaatggacaatatattaaacttctagaaataatatgcactggatatgtaaaaaagctttgtcacaaacataattatgtttcacaatataggtaa |
33159068 |
T |
|
| Q |
314 |
atattact |
321 |
Q |
| |
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|||||||| |
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|
| T |
33159067 |
atattact |
33159060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 33182209 - 33181903
Alignment:
| Q |
14 |
aaatcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33182209 |
aaatcaactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacc |
33182110 |
T |
|
| Q |
114 |
tccacaaatgatgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacgnnnnnnnnnnnnctttctcaatttaaacttgtcaacaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33182109 |
tccacaaatgatgacaatgtcatcctccctcttcatttttcaaaggaaatttattagtcacg-tttttttttttctttctcaatttaaacttgtcaacaa |
33182011 |
T |
|
| Q |
214 |
tgaagagaatggacaatatattaaacttctagaaataatatgcactggatatgtaaaaaagctttgtcacaaacataattatgtttcacaatataggtaa |
313 |
Q |
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| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33182010 |
taaagagaatggacagtatattaaacttctagaaataatatgcactggatatgtaaaaaagctttgtcacaaacataattatgtttcacaatataggtaa |
33181911 |
T |
|
| Q |
314 |
atattact |
321 |
Q |
| |
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|||||||| |
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|
| T |
33181910 |
atattact |
33181903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 33140737 - 33140630
Alignment:
| Q |
22 |
tcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctccacaaa |
121 |
Q |
| |
|
||||| ||||| || ||||||||||||| |||||||||| | || |||||| |||||| ||||| |||||||||||||||||||||||||||||| ||| |
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|
| T |
33140737 |
tcaattgaagtcttcgtctgcttaatagcggcatcatttgctagagcaccagcatacttagtgaactgttgaatccattccttatctttacctccataaa |
33140638 |
T |
|
| Q |
122 |
tgatgaca |
129 |
Q |
| |
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|||||||| |
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|
| T |
33140637 |
tgatgaca |
33140630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 33287371 - 33287514
Alignment:
| Q |
18 |
caactcaatggaagtgtttgtctgcttaatagtggcatcatttaccagggcaccaaaatactttgtgaattgttgaatccattccttatctttacctcca |
117 |
Q |
| |
|
||||||||| ||||| |||| |||||||||| | | ||||||| | |||||| | | |||| ||||||| ||| |||||| ||||||||||||||||| |
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| T |
33287371 |
caactcaattgaagtctttgcctgcttaatatttgtatcatttgctagggcagtagcaaacttggtgaattcttggatccatgccttatctttacctcca |
33287470 |
T |
|
| Q |
118 |
caaatgatgacaatgtcatcctccctcttcatttttcaaaggaa |
161 |
Q |
| |
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||||||| |||| | |||||| |||||||||||||||||| |
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| T |
33287471 |
taaatgataacaaacttctcctcctccttcatttttcaaaggaa |
33287514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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