View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13480_low_7 (Length: 322)

Name: NF13480_low_7
Description: NF13480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13480_low_7
NF13480_low_7
[»] chr4 (1 HSPs)
chr4 (17-314)||(20119503-20119800)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 20119503 - 20119800
Alignment:
Q  17 agtaattccggtcagataaaccggattcctcctgaaccgccgcaagtggatcttgaagccggtccggttcgtcctccatcaaacggtgtcgtacagagta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20119503 agtaattccggtcagataaaccggattcctcctgaaccgccgcaagtggatcttgaagccggtccggttcgtcctccatcaaacggtgtcgtacagagta 20119602  T
Q  117 ataatgtgaatgcgactgttccggtgccggttccggttgttaaagatcaaacggtgaagaaacggagggattctgatggtgttccgagtactaatggaca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20119603 ataatgtgaatgcgactgttccggtgccggttccggttgttaaagatcaaacagtgaagaaacggagggattctgatggtgttccgagtactaatggaca 20119702  T
Q  217 ggcgaatcctgcaccggggacgggaacggagcaggcgacgcaggtgaggaggacgttgaggaatgaggaagttgttgatggtttggttgttgatgatg 314  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20119703 ggcgaatcctgcaccggggacgggaacggagcaggccacgcaggtgaggaggacgttgaggaatgaggaagttgttgatggtttggttgttgatgatg 20119800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University