View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13480_low_8 (Length: 299)
Name: NF13480_low_8
Description: NF13480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13480_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 36892864 - 36892597
Alignment:
| Q |
19 |
ttgaatgcttaatcattctcaaggtctcaacaataagaggttgcctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaat |
118 |
Q |
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| T |
36892864 |
ttgaatgcttaatcattctcaaggtctcaacaataagaggttgcctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaat |
36892765 |
T |
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| Q |
119 |
ggcacttggtatttttattagaatttcgttaaccatttcaactattccattttttgctgcaaccaaaaatggtgtcatctttttcttgatttccttttca |
218 |
Q |
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| T |
36892764 |
ggcacttggtacttttattagaatttcgttaaccatttcaactattccattttttgctgcaaccaaaaatggtgtcatctttttcttgatttccttttca |
36892665 |
T |
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| Q |
219 |
ttgtccttctttatttcatttggacttgatgttatttcctttacgacatcttgctctggttcttgttc |
286 |
Q |
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| T |
36892664 |
ttttccttctttatttcatttggacttgatgttatttcctttacgacatcttgctctggttcttgttc |
36892597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 31 - 194
Target Start/End: Complemental strand, 36881762 - 36881599
Alignment:
| Q |
31 |
tcattctcaaggtctcaacaataagaggttgcctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtat |
130 |
Q |
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| T |
36881762 |
tcattctcaatgtctcaacaataacgggttgtcttgacttcactgcaacatgcaatacattttctttccttgagtttgtgtcatgaatggcacttggaat |
36881663 |
T |
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| Q |
131 |
ttttattagaatttcgttaaccatttcaactattccattttttgctgcaaccaaaaatggtgtc |
194 |
Q |
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| T |
36881662 |
tttgtctagaaattcgttaaccagttcaactattccatttttcgctgcaaccaaaaatggtgtc |
36881599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 192
Target Start/End: Complemental strand, 36901846 - 36901716
Alignment:
| Q |
62 |
cctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccatttcaact |
161 |
Q |
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| T |
36901846 |
cctgtattctactgcaacaagcaatacattttgtttgcttgagttagtactacggagggcagttggtgcttcgattagaatttctttcaccatttcatat |
36901747 |
T |
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| Q |
162 |
attccattttttgctgcaaccaaaaatggtg |
192 |
Q |
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| T |
36901746 |
atgccatttctagctgcaaccaaaattggtg |
36901716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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