View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13480_low_9 (Length: 249)
Name: NF13480_low_9
Description: NF13480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13480_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 52590117 - 52589884
Alignment:
| Q |
1 |
ctcaaaccatatgctgttgttttttaattccattcattcattcgcgttgccctcattgttcataaaagtgatgtaattcacaaacgtacaaaatatacag |
100 |
Q |
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| T |
52590117 |
ctcaaaccatatgctgttgttttttaattc-attcattcattcgcgttgccctcattgttcataaaagtgatgtaattcacaaacgtacaaaatatacag |
52590019 |
T |
|
| Q |
101 |
ataggtatatatatgtgttagatatattcatttacttattgtaataataatattacagatgattggttctattttatccgcaggcaattttttgcaatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52590018 |
ataggtatatatatgtgttagatatattcatttacttattgtaataataatattacagatgattggttctattttatctgcaggcaattttttgcaatgc |
52589919 |
T |
|
| Q |
201 |
attgatgttgaataagaaattttgtgtgtaaataa |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
52589918 |
attgatgttgaataagaaattttgtgtgtaaataa |
52589884 |
T |
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