View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13481_high_5 (Length: 371)
Name: NF13481_high_5
Description: NF13481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13481_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 43951339 - 43951684
Alignment:
| Q |
11 |
cagagagtgagcaaagtggtggtggtggatgtgcatgctgatatggaagtactaaataattgcaggcactcccttcaatgctgt--ttcaaattcttcaa |
108 |
Q |
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| T |
43951339 |
cagagagtgagcaaagtggtggtggtggatgtgcatgctgatatggaagtactaaataattgcaggcactcccttcaatgctgtgtttcaaattcttcaa |
43951438 |
T |
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| Q |
109 |
attctttttggtcatatagtgtactacactgtatgccatgattgtgtgggtaaattgtgtacctcgatgttccctttttgatagtactattgttttggga |
208 |
Q |
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| T |
43951439 |
attctttttggtcatatagtgtactacgctgtatgccatgattgtgtgggtaaattgtgtacctcgatgttccctttttgatagtactattgttttggga |
43951538 |
T |
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| Q |
209 |
aggatgagcttgagaatgttgcacacttggggaaaacatattccattgatttaccacgaattagataggcttgaagtgatttttgttttctttggtgttc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43951539 |
aggatgagcttgagaatgttgcacacttggggaaaacatattccattgatttaccacgaattagataggcttgaagtgatttttgttttctttggtgttc |
43951638 |
T |
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| Q |
309 |
aaattgagatgtggcatgaaatgtttatattctgtttgaatgatgt |
354 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43951639 |
aaattgagatgtggcatgaaatgttaatattctgtttgaatgatgt |
43951684 |
T |
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