View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13481_low_2 (Length: 1668)
Name: NF13481_low_2
Description: NF13481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13481_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 834; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 834; E-Value: 0
Query Start/End: Original strand, 11 - 950
Target Start/End: Complemental strand, 54636873 - 54635928
Alignment:
| Q |
11 |
acatcatcatttcatgctccatatcatcattcaagttaataccctcgatcacaacatcaccttgaatatggcaattgatatcaattttaattagttcgca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54636873 |
acatcatcatttcatgctccatatcatcattcaagttaataccctcgatcacaacatcaccttgaatatggcaattgatatcaattttaattagttcgca |
54636774 |
T |
|
| Q |
111 |
ctctccctgcaatacagtagcaaggaattccatgataattacacaattcagatcagttccagatgcatctcactcacaggaacaagtaacttgacaaaca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54636773 |
ctctccctgcaatacagtagcaaggaattccatgataattacacaattcagatcagttccagatgcatctcactcacaggaacaagtaacttgacaaaca |
54636674 |
T |
|
| Q |
211 |
gtggttttattaaaatcttgtnnnnnnngatatttattgaattttaactggaatggaatcgtcctgaactcgagcatatggtatgtttgtcaaatctgct |
310 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54636673 |
gtggttttattaaaatcttgtaaaaaaagatatttattgaattttaactggaatggactcgtcctgaactcgagcatatggtatgtttgtcaaatctgct |
54636574 |
T |
|
| Q |
311 |
aaatgcnnnnnnnnnn----atcaagcaacaa-tgcaataaacggcaggagagggcctgcgcccagccaacaaagttaatacatcaaatccagccaataa |
405 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54636573 |
aaatgcttttttttctttctatcaagcaacaaatgcaataaacggcaggagagggcctgcgcccagccaacaaagttaatacatcaaatccagccaataa |
54636474 |
T |
|
| Q |
406 |
ggcaaaacagcacaaacaaaaattacattaaaagcctatgaacatagattatatgaacttatcttgccttcttcatttaagtattttcccactgtttttc |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
54636473 |
ggcaaaacagcacaaacaaaaattacattaaaagcctatgaacatagattatatgaacttatcttgccttcttcatttaaatattttcccactctttttc |
54636374 |
T |
|
| Q |
506 |
atttctcatttctggtatattgatgcctaatatgcttcgatcaagtctaagtaatcttaatgacgtttcggtttttacatgctcttcatgagtataggtg |
605 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54636373 |
atttctcatttctggtatattgatgccgaatatgcttcgatcaagtctaagtaatcttaatgacgtttcggtttttacatgctcttcatgagtataggtg |
54636274 |
T |
|
| Q |
606 |
catgcatatatgcccaacatttataatccaaggcgcaagctaccaaaatgtaattagttattctggctctacttaataagcaggaaaacaagtttgagct |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54636273 |
catgcatatatgcccaacatttataatccaaggcacaagctaccaaaatgtaattagttattctggctctacttaataagcaggaaaacaagtttgagct |
54636174 |
T |
|
| Q |
706 |
gcaaatgaatggcctatgaactatttgaagtttaaactatgagaaaatgtgcagcatatttcgttaagtactcgaaatggctgaaaataaaccagcacta |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54636173 |
gcaaatgaatggcctatgaactatttgaagtttaaactatgagaaaatgtgcagcatatttcattaagtactcgaaatggctgaaaataaaccagcacta |
54636074 |
T |
|
| Q |
806 |
ttgcaggaaggtaaaataagagattttccccccttttcatatcagaacctgtttgctacattttatgaggttccaagtcatctcaggaacatagcaactc |
905 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54636073 |
ttgcaggaaggtaaaataagagattttccccccttttcatatcagaacctgtttgctacattttatgaggttccaagtcatctcaggaacatagcaactc |
54635974 |
T |
|
| Q |
906 |
gcagattataacaattgtttgccacagtaacacc-tagtttatttt |
950 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
54635973 |
gcagattttaacaattgtttgccacagtaacaccgtagtttatttt |
54635928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 733; E-Value: 0
Query Start/End: Original strand, 865 - 1621
Target Start/End: Complemental strand, 54635932 - 54635176
Alignment:
| Q |
865 |
attttatgaggttccaagtcatctcaggaacatagcaactcgcagattataacaattgtttgccacagtaacacctagtttatttttatctgttaaaaat |
964 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
54635932 |
attttatgaggttccaagtcatctcaggaacatagcaactcgcagattttaacaattgtttgccacggtaacacctagtttatttttatctgttaaaaat |
54635833 |
T |
|
| Q |
965 |
aattatctaccgattgtctttgagatttcgtaatgcatgcaatgagtgcgtaattccttcaaattaatggctccaataaaatcattaacatacaaaaagc |
1064 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54635832 |
aattatctaccgattgtctttgagattttgtaatgcatgcaatgagtgtgtaattccttcaaattaatggctccaataaaatcattaacatacaaaaagc |
54635733 |
T |
|
| Q |
1065 |
taaaatatgagggaaaagcatgaggtaaattcacctgcttgtaagcccggacatttttacttctctttggcattgagtacaacattttaggacttttatc |
1164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54635732 |
taaaatatgagggaaaagcatgaggtaaattcacctgcttgtaagcccggacatttttacttctctttggcattgagtacagcattttaggacttttatc |
54635633 |
T |
|
| Q |
1165 |
tgcactaaaaggatcctgtccataaattctaaacaatggatgacaacccccttccccatcaaagtttgggaagaatctaagtataatacagtccaacatg |
1264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54635632 |
tgcactaaaaggatcctgtccataaattctaaacaatggatgacaaccaccttccccatcaaagtttgggaagaatctaagtataatacagtccaacatg |
54635533 |
T |
|
| Q |
1265 |
agtgccctgtcgagcggaggccaatctaaggccacattcctcctagaaacatactgcagatacctcagttgggaaggaattggattcaacggcgtcaaca |
1364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54635532 |
agtgccctgtcgagcggaggccaatctaaggccacattcctcctagaaacatactgcagatacctcagttgggaaggaattggattcaacggcgtcaaca |
54635433 |
T |
|
| Q |
1365 |
aatgtaaaagctggtgtggggactgccgataaatcatatccaaagtcctatgctcgccactataaaccttccgataaatcaacaatgcagctaacatgaa |
1464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54635432 |
aatgtaaaagctggtgtggggactgccgataaatcatatccaaagtcctatgctcgccactataaaccttccgataaatcaacaatgcagctaacatgaa |
54635333 |
T |
|
| Q |
1465 |
agccataacgggccaaccaccacgttcacaatgcatcaacaacacattgtgttgaccaagtgaaagccaactttcactagaccttaaaaagtggtgaatg |
1564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54635332 |
agccataacgggccaaccaccacgttcacaatgcatcaacaacacattgtgttgaccaagtgaaagccaactttcactagaccttaaaaagtggtgaatg |
54635233 |
T |
|
| Q |
1565 |
agctccattttaagcacaggacaaccttcataatgcctaggataatccattatagta |
1621 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54635232 |
agctccattttaagcacaggacaaccttcataatgcctaggataatccattatagta |
54635176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 1615 - 1668
Target Start/End: Original strand, 54635065 - 54635118
Alignment:
| Q |
1615 |
tatagtaggtcagcttagagagaatgtgcctgatgcttctattttggttttcaa |
1668 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54635065 |
tatagtaggtcagcttagagagaatgtgcctgatgcttctattttggttttcaa |
54635118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 327 - 378
Target Start/End: Complemental strand, 1963746 - 1963694
Alignment:
| Q |
327 |
atcaagcaacaa-tgcaataaacggcaggagagggcctgcgcccagccaacaa |
378 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963746 |
atcaagcaacaaatgcaataaacggcaggagagggcctgcgcccagccaacaa |
1963694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 25460093 - 25460126
Alignment:
| Q |
345 |
aaacggcaggagagggcctgcgcccagccaacaa |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
25460093 |
aaacggcaggagagggcctgcgcccagccaacaa |
25460126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University