View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13481_low_3 (Length: 578)

Name: NF13481_low_3
Description: NF13481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13481_low_3
NF13481_low_3
[»] chr5 (2 HSPs)
chr5 (13-393)||(17716881-17717255)
chr5 (389-575)||(17731286-17731472)
[»] chr1 (6 HSPs)
chr1 (38-152)||(20010293-20010406)
chr1 (38-152)||(24193503-24193616)
chr1 (38-152)||(24195452-24195565)
chr1 (149-294)||(51377306-51377451)
chr1 (364-450)||(20009889-20009978)
chr1 (373-450)||(24195875-24195955)
[»] chr3 (2 HSPs)
chr3 (38-152)||(3070589-3070703)
chr3 (38-114)||(9445139-9445215)
[»] chr7 (2 HSPs)
chr7 (441-562)||(37068200-37068321)
chr7 (364-450)||(4554301-4554390)
[»] chr2 (1 HSPs)
chr2 (38-327)||(2948017-2948318)
[»] chr8 (1 HSPs)
chr8 (364-450)||(43265682-43265771)
[»] chr4 (1 HSPs)
chr4 (504-541)||(11945400-11945437)


Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 13 - 393
Target Start/End: Original strand, 17716881 - 17717255
Alignment:
Q  13 tcataatgtattatctattattttgttttaaactaacatttaagttataatttataatagattcaatccaagaaaagaaataggcttgaacatgagatgt 112  Q
    |||||||||||||||||| ||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17716881 tcataatgtattatctatcattta-ttttaaactaacatttaagttataatttgtaatagattcaatccaagaaaagaaataggcttgaacatgagatgt 17716979  T
Q  113 tgcagaacttgtttttcatcaaatatagccaaactttgaaagaacgctataatagtaatgacatgattgatccggtgatattgaatgatattaatgctag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  17716980 tgcagaacttgtttttcatcaaatatagccaaactttgaaagaacgcaataatagtaatgacaagattgatacggtgatattgaatgatattaatgctag 17717079  T
Q  213 tagcgagtggttatagggagatgaatatcgtgtaggtcaagttgatgttgtctatgataatgatgagtttggttggctagatgttcaagtagcaagtggt 312  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||    
T  17717080 tagcgagtggttatagggagatgaatattgtgtaggtcaagttgatgttgtctatgataatgatgagtttggttggctagat-----agtagcaagtggt 17717174  T
Q  313 gctgctgagcccatagttcaagcaacctccgtcacggcctaaatgttcatgttctaaggcaaaagcaaagaaagtggtaga 393  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17717175 gctgctgagcccatagttcaagcaacctccgtctcggcctaaatgttcatgttctaaggcaaaagcaaagaaagtggtaga 17717255  T

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Target: chr5; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 389 - 575
Target Start/End: Original strand, 17731286 - 17731472
Alignment:
Q  389 gtagaaattgatgaatatgacccggagtttgttaattggaaggatgaagaaaaagaggatgagattgaagagaaagaggacaaagaagagtacatggatc 488  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17731286 gtagaaattgatgaatatgacccagagtttggtaattggaaggatgaaaaaaaagaggatgagattgaagagaaagaggacaaagaagagtacatggatc 17731385  T
Q  489 actatagtggtggaagaagtgattatgaagattttcatgattcttgaactttttatttgagttttgatgtttagaacctttgctact 575  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||    
T  17731386 actatagtggtggaagaaatgatgatgaagattttcatgattcttgaactttttatttgagttttgatgtttagtatctttgttact 17731472  T

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Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 20010406 - 20010293
Alignment:
Q  38 ttttaaactaacatttaagttataatttataatagattcaatccaagaaaagaaataggcttgaacatgagatgttgcagaacttgtttttcatcaaata 137  Q
    ||||||| |||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| ||||  |||| ||    
T  20010406 ttttaaattaacatttaaattataattt-taatagattcactccaagaaaagaaataggcttgaacatgagatgttgcaaaaattggtttttgtcaagta 20010308  T
Q  138 tagccaaactttgaa 152  Q
    || ||||||||||||    
T  20010307 taaccaaactttgaa 20010293  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 24193616 - 24193503
Alignment:
Q  38 ttttaaactaacatttaagttataatttataatagattcaatccaagaaaagaaataggcttgaacatgagatgttgcagaacttgtttttcatcaaata 137  Q
    |||||||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| ||||  |||||||    
T  24193616 ttttaaactaacgtttaaattataattt-taatagattcactccaagaaaagaaataggcttgaacatgagatgttgcaaaaattgatttttgtcaaata 24193518  T
Q  138 tagccaaactttgaa 152  Q
     | ||||||||||||    
T  24193517 caaccaaactttgaa 24193503  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 24195452 - 24195565
Alignment:
Q  38 ttttaaactaacatttaagttataatttataatagattcaatccaagaaaagaaataggcttgaacatgagatgttgcagaacttgtttttcatcaaata 137  Q
    ||||||| |||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| || ||| ||||  |||| ||    
T  24195452 ttttaaaataacatttaaattataattt-taatagattcactctaagaaaagaaataggcttgaacatgagatgttgcaaaaattgatttttgtcaagta 24195550  T
Q  138 tagccaaactttgaa 152  Q
     | ||||||||||||    
T  24195551 caaccaaactttgaa 24195565  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 149 - 294
Target Start/End: Complemental strand, 51377451 - 51377306
Alignment:
Q  149 tgaaagaacgctataatagtaatgacatgattgatccggtgatattgaatgatattaatgctagtagcgagtggttatagggagatgaatatcgtgtagg 248  Q
    |||||||||||||| | ||| ||||  |||||||||  |||||  || |||||||||||| ||||||||| ||||||| |||||||||||  |||| |||    
T  51377451 tgaaagaacgctatgacagtgatgatgtgattgatctagtgatcgtggatgatattaatggtagtagcgaatggttattgggagatgaatgccgtggagg 51377352  T
Q  249 tcaagttgatgttgtctatgataatgatgagtttggttggctagat 294  Q
    | ||| ||||||||| |||||| | ||||| || ||||||||||||    
T  51377351 tgaaggtgatgttgtttatgatgacgatgatttgggttggctagat 51377306  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 450
Target Start/End: Complemental strand, 20009978 - 20009889
Alignment:
Q  364 ttctaaggcaaaagcaaagaaagtggtagaaattgatgaatatgacccggagtttgtta---attggaaggatgaagaaaaagaggatga 450  Q
    |||||| | ||||| |||||||||||||| | |||| |||||||| || ||||||||||   |||||  |||||||||||||||||||||    
T  20009978 ttctaaaggaaaaggaaagaaagtggtagtagttgacgaatatgatcctgagtttgttactgattggggggatgaagaaaaagaggatga 20009889  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 450
Target Start/End: Original strand, 24195875 - 24195955
Alignment:
Q  373 aaaagcaaagaaagtggtagaaattgatgaatatgacccggagtttgtta---attggaaggatgaagaaaaagaggatga 450  Q
    ||||| |||||||||||||| | |||| |||||||| || ||||||||||   |||||  |||||||||||||||||||||    
T  24195875 aaaaggaaagaaagtggtagtagttgacgaatatgatcctgagtttgttactgattggggggatgaagaaaaagaggatga 24195955  T

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Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 3070703 - 3070589
Alignment:
Q  38 ttttaaactaacatttaagttataatttataatagattcaatccaagaaaagaaataggcttgaacatgagatgttgcagaacttgtttttcatcaaata 137  Q
    |||||||||||||||||| ||||||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||| || ||| ||||  |||| ||    
T  3070703 ttttaaactaacatttaaattataatttgtaatagattccctccaagaaaagaaataggcttgaacaggagatgttgcaaaaattggtttttgtcaagta 3070604  T
Q  138 tagccaaactttgaa 152  Q
     | ||||||||||||    
T  3070603 caaccaaactttgaa 3070589  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 9445215 - 9445139
Alignment:
Q  38 ttttaaactaacatttaagttataatttataatagattcaatccaagaaaagaaataggcttgaacatgagatgttg 114  Q
    ||||||||||||| |||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  9445215 ttttaaactaacaattaaattataatttgtaatagattcgctccaagaaaagaaataggcttgaacatgagatgttg 9445139  T

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Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 441 - 562
Target Start/End: Original strand, 37068200 - 37068321
Alignment:
Q  441 aagaggatgagattgaagagaaagaggacaaagaagagtacatggatcactatagtggtggaagaagtgattatgaagattttcatgattcttgaacttt 540  Q
    ||||||| ||| ||||||||||||||||  |||||||| |  || | |||| |||||||||| |||| ||| |||||||||||||||||| |||||||||    
T  37068200 aagaggaagagtttgaagagaaagaggatgaagaagagcatgtgcaccactctagtggtggaggaagcgatgatgaagattttcatgattattgaacttt 37068299  T
Q  541 ttatttgagttttgatgtttag 562  Q
    |||||||| |||||||||||||    
T  37068300 ttatttgacttttgatgtttag 37068321  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 450
Target Start/End: Complemental strand, 4554390 - 4554301
Alignment:
Q  364 ttctaaggcaaaagcaaagaaagtggtagaaattgatgaatatgacccggagtttgtta---attggaaggatgaagaaaaagaggatga 450  Q
    |||||| | ||||| |||||||||||||| | |||| ||||||||  | ||||||||||   |||||  |||||||||||||||||||||    
T  4554390 ttctaaaggaaaaggaaagaaagtggtagtagttgacgaatatgattctgagtttgttactgattggggggatgaagaaaaagaggatga 4554301  T

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Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 38 - 327
Target Start/End: Original strand, 2948017 - 2948318
Alignment:
Q  38 ttttaaactaacatttaagttataatttataatagattcaatccaagaaaagaaataggcttgaacatgagatgttgcagaacttgtttttcatcaaata 137  Q
    |||||||||||||||||| || |||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| || ||| ||||  | || ||    
T  2948017 ttttaaactaacatttaacttctaatttgtaatagattcactccaagaaaagaaataggcttaaacatgagatgttgcaaaaattggtttttgttaagta 2948116  T
Q  138 tagccaaactttgaaagaacgctataatagtaatgacatgattgatccggtgatattgaatgat------attaatgctagtagcgagtggttataggga 231  Q
     | |||||||||||| |||| |  | | ||| ||||    ||||||||||||||  || |||||      ||||||| | |||| || ||||||| |||     
T  2948117 caaccaaactttgaaggaacaccgtgaaagtgatgaatatattgatccggtgatcatggatgatcctgaaattaatgttggtagagaatggttattgggc 2948216  T
Q  232 gatgaatatcgtgt------aggtcaagttgatgttgtctatgataatgatgagtttggttggctagatgttcaagtagcaagtggtgctgctgagccca 325  Q
    ||||||  ||||||      |||||||  ||| ||||| |||||| ||||||| || |||| |||||||||| |||  || ||||||||||| |||||||    
T  2948217 gatgaagttcgtgttcgtgaaggtcaaagtgaggttgtttatgatgatgatgatttaggtttgctagatgttgaagaggcgagtggtgctgccgagccca 2948316  T
Q  326 ta 327  Q
    ||    
T  2948317 ta 2948318  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 450
Target Start/End: Complemental strand, 43265771 - 43265682
Alignment:
Q  364 ttctaaggcaaaagcaaagaaagtggtagaaattgatgaatatgacccggagtttgtta---attggaaggatgaagaaaaagaggatga 450  Q
    |||||| | ||||| |||||||||||||| | |||| |||||||| || |||||| |||   |||||  |||||||||||||||||||||    
T  43265771 ttctaaaggaaaaggaaagaaagtggtagtagttgacgaatatgatcctgagtttattactgattggggggatgaagaaaaagaggatga 43265682  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 541
Target Start/End: Complemental strand, 11945437 - 11945400
Alignment:
Q  504 gaagtgattatgaagattttcatgattcttgaactttt 541  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  11945437 gaagtgatgatgaagattttcatgatttttgaactttt 11945400  T

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