View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13481_low_4 (Length: 532)
Name: NF13481_low_4
Description: NF13481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13481_low_4 |
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| [»] chr2 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 175 - 532
Target Start/End: Complemental strand, 14373800 - 14373442
Alignment:
| Q |
175 |
tcaattgatcaccataagcaaacaaaaagctccttctgtcaatggtaaaagaatacaaaagacaaa-gtctagcaacaaaaatctatgtgccactaaaat |
273 |
Q |
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| T |
14373800 |
tcaattgatcaccataagcaaacaaaaagctccttctgtcaatggtaaaagaatacaaaagacaaaagtctagcaacaaaaatctatgtgccactaaaat |
14373701 |
T |
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| Q |
274 |
caatgtcctagtttgcttgcttccaannnnnnnnnnnnnnntactcaatcaagtgtcatcgacaatgacacttattattataatacttaaaaccattgat |
373 |
Q |
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| T |
14373700 |
caatgtcctagtttgcttgcttccaatctctctctctctcttactcaatcaagtgtcatcgacaatgacacttattattataatacttaaaaccattgat |
14373601 |
T |
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| Q |
374 |
taatgcaagaggctaattaactaaaactaacacttcacaaaacttgatgtaaaatcacaccaaaggtgcatctatattaaatcccagcctgtaattatct |
473 |
Q |
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| T |
14373600 |
taatgcaagaggctaattaactataactaacacttcacaaaacttgatgtaaaatcacaccaaaggtgcatctatattagatcccagcctgtaattatct |
14373501 |
T |
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| Q |
474 |
atgaagcacacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatca |
532 |
Q |
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| T |
14373500 |
atgaagcacacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatca |
14373442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 14374051 - 14373925
Alignment:
| Q |
1 |
cagagaggtcaagaaagataatctaacttcagacttcacagtagctaaatgccaagcatctctagttgtaaattcatgtatttcattccaacnnnnnnng |
100 |
Q |
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| T |
14374051 |
cagagaggccaagaaagataatctaacttcagacttcacagtagctaaatgccaagcatctctagttgtaaattcatgtatttcattccaacaaaaaaag |
14373952 |
T |
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| Q |
101 |
acaaaattatattcagttcctgtttgg |
127 |
Q |
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| T |
14373951 |
acaaaattatattcagttcctgtttgg |
14373925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 14373899 - 14373846
Alignment:
| Q |
121 |
tgtttggaaggtctttagacatgaaatagggaagctacaatttctagagtttag |
174 |
Q |
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| T |
14373899 |
tgtttagaaggtctttagacatgaaatagggaagctacaatttctagagtttag |
14373846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 532
Target Start/End: Complemental strand, 43586071 - 43586020
Alignment:
| Q |
481 |
acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatca |
532 |
Q |
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| T |
43586071 |
acacgtcaacacagataaaattttgagaaaatgacataattcaatgtaatca |
43586020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 532
Target Start/End: Complemental strand, 5937487 - 5937436
Alignment:
| Q |
481 |
acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatca |
532 |
Q |
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| T |
5937487 |
acacgtcaacacggataaaattttgagaaaatgacataattcaatgtaatca |
5937436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 12078338 - 12078377
Alignment:
| Q |
1 |
cagagaggtcaagaaagataatctaacttcagacttcaca |
40 |
Q |
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| T |
12078338 |
cagagaggccaagaaagataatctaacatcagacttcaca |
12078377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 532
Target Start/End: Original strand, 42192282 - 42192320
Alignment:
| Q |
494 |
aataaaattttgacgcaatgacataattcaatgtaatca |
532 |
Q |
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| T |
42192282 |
aataaaattttgagacaatgacataattcaatgtaatca |
42192320 |
T |
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