View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13481_low_6 (Length: 453)
Name: NF13481_low_6
Description: NF13481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13481_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 43002264 - 43001839
Alignment:
| Q |
16 |
aaagtatcatttaaatctccttaaaacattgatatgcactactatacacacttttattatggcatgtaacc-caattgttcaacactcatcctctcattt |
114 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
43002264 |
aaagtatcatttaaatctccttaaaacattggtatgcactactatacacacttttattatggcatgtaacctcaattattcaacactcaccctctcattt |
43002165 |
T |
|
| Q |
115 |
accaactatatatgtatatataattcaagctataccgtgtgacacattgcacaagcctctaaaactttattgtttcacacaatattcatgtataatgcct |
214 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43002164 |
accaactatatatgtatatataattcaaggtataccgtgtgacacattgcacaagcctctaaaactttattgtttcacacaatattcatgtataatgcct |
43002065 |
T |
|
| Q |
215 |
ctaaaactggtatgatgttccaagtctttgtctctccctctttctcacattcctttctttgcaattaacagaagctaggaccaataacctttgaaaattc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43002064 |
ctaaaactggtatgatgttccaagtctttgtctctccctctttctcacattcctttctttgcaattaacagaagctaggaccaataacctttgaaaattc |
43001965 |
T |
|
| Q |
315 |
taaagaaactaattccatttctcttcatcaatatttgtttgcttcacaaaacttgaactagtaatcaactcattcacactagtatttccatacgatgtcg |
414 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43001964 |
taaagaaactaattccatttctcttcatccatatttgttagcttcacaaaacttgaactagtaatcaactcattcacactagtatttctatacgatgtcg |
43001865 |
T |
|
| Q |
415 |
caactaatgatccactcctttgcttc |
440 |
Q |
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| T |
43001864 |
caactaatgatccactcctttgcttc |
43001839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 74 - 440
Target Start/End: Complemental strand, 5512549 - 5512182
Alignment:
| Q |
74 |
atggcatgtaacc-caattgttcaacactcatcctctcatttaccaactatatatgtatatataattcaagctataccgtgtgacacattgcacaagcct |
172 |
Q |
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||||||||||||| ||||| ||||||| ||| || ||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||| |
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| T |
5512549 |
atggcatgtaacctcaattattcaacattcacactttcacttaccaactatatatctatatataattcaaggtatacggtgtgacacattgcacagacct |
5512450 |
T |
|
| Q |
173 |
ctaaaactttattgtttcacacaatattcatgtataatgcctctaaaactggtatgatgttccaagtctttgtctctccctctttctcacattcctttct |
272 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||| || |||||||||| |
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| T |
5512449 |
ttaaaagtttattgtttcacacaatattcatttataatgcctctaaaactggcatgatgttccaagtctttgtctctgcctctttcccaaattcctttct |
5512350 |
T |
|
| Q |
273 |
ttgcaattaacagaagctaggaccaataacctttgaaaattctaaagaaactaattccatttctcttcatcaatatttgtttgcttcacaaaacttgaac |
372 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
5512349 |
ttgcaattaacaaaagctgggaccaataacctttgaaaattctcaagaaactggttccatttctcttcatccatatctgtcagcttcacaaaacttgaac |
5512250 |
T |
|
| Q |
373 |
tagtaatcaactcattcacactagtatttccatacgatgtcgcaactaatgatccactcctttgcttc |
440 |
Q |
| |
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|||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||| |
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|
| T |
5512249 |
tagtaatcaactcattcacactagtatttccagatgatgtcccaactaatgatccactcctttgcttc |
5512182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 2773092 - 2773190
Alignment:
| Q |
58 |
tatacacacttttattatggcatgtaacc-caattgttcaacactcatcctctcatttaccaactatatatgtatatat--aattcaagctataccgtg |
153 |
Q |
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||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||||| ||||||| |
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| T |
2773092 |
tatacacacttttgttatggcatgtaacctcaattattcaacactcaccctctcatttaccagctatatatgtatatatacaattcaagctgtaccgtg |
2773190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 2773265 - 2773363
Alignment:
| Q |
58 |
tatacacacttttattatggcatgtaacc-caattgttcaacactcatcctctcatttaccaactatatatgtatatat--aattcaagctataccgtg |
153 |
Q |
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||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||||| ||||||| |
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| T |
2773265 |
tatacacacttttgttatggcatgtaacctcaattattcaacactcaccctctcatttaccagctatatatgtatatatacaattcaagctgtaccgtg |
2773363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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