View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13481_low_8 (Length: 361)
Name: NF13481_low_8
Description: NF13481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13481_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 44330505 - 44330164
Alignment:
| Q |
1 |
atcacatagatttcacattaggctaaaaacaaccatacatatgatttagacaccacgtctttcacccctaaaaccttagatatataaactgtaatcatac |
100 |
Q |
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| T |
44330505 |
atcacatagatttcacattaggctaaaaacaaccatacatatgatttagacaccaggtctttcacccctaaaaccttagatatataaactgtaatcatac |
44330406 |
T |
|
| Q |
101 |
aagaccatgaattaaaccttaagaacatttaacttacatgtcaagtgggcatagcaacatacaatcatctcctcgagaactcgtgaacactctctttatc |
200 |
Q |
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| T |
44330405 |
aagaccatgaattaaaccttaagaacatttaacttacatgtcaagtgggcatagcaacatacaatcatctcctcgagaactcgtgaacactctctttatc |
44330306 |
T |
|
| Q |
201 |
acacattccaaaggaaggttgttcgcaggatcaacctaagaacataatttataaaaattaacaacgatactaaatattcctatcaaatctacaattacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44330305 |
acacattccaaaggaaggttgttcgcaggatcaacctaagaacataatttataaaaattaacaacgatactaaatattcctatcaaatctacaattacca |
44330206 |
T |
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| Q |
301 |
aagattgtacctaaacataacagaaatcgtcaataactaact |
342 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44330205 |
aagattgtaccttaacataacagaaatcgtcaataactaact |
44330164 |
T |
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