View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13482_low_3 (Length: 240)
Name: NF13482_low_3
Description: NF13482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13482_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 16193688 - 16193519
Alignment:
| Q |
1 |
tacttgaacttcaaaagcaaaaagttgatattgaattgtaaagttagaataaaacaatcaatttacttcctaaactattacttttctttttaatttactt |
100 |
Q |
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| T |
16193688 |
tacttgaacttcaaaagcaaaaagtttatatagaattgtaaagttagaataaaacaatcaatttacttcctaaactattacttttctttttaatttactt |
16193589 |
T |
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| Q |
101 |
tctaaactatgtaaatatactaaatagtctctacaatatataaaatacgtcaatttaatctctactatta |
170 |
Q |
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| T |
16193588 |
tctaaactatgtaaatatactaaatagtccctaaaatatataaaatacattaatttagtctctgctatta |
16193519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 16193475 - 16193434
Alignment:
| Q |
177 |
ttcaatttaacttcaccaatcataagttcggcgcttaagaga |
218 |
Q |
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| T |
16193475 |
ttcaatttagcttcaccaatcatgagttgggcgcttaagaga |
16193434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 50213380 - 50213319
Alignment:
| Q |
110 |
tgtaaatatactaaatagtctctacaatatataaaatacgtcaatttaatctctactattaa |
171 |
Q |
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| T |
50213380 |
tgtaaatataataaatagtttctaaaatatataaaacccgccaatttagtctctgctattaa |
50213319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 6364867 - 6364903
Alignment:
| Q |
135 |
aatatataaaatacgtcaatttaatctctactattaa |
171 |
Q |
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| T |
6364867 |
aatatataaaattcgtcaatttaatctctactattaa |
6364903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 32708697 - 32708762
Alignment:
| Q |
92 |
aatttactttctaaactatgtaaatatactaaatagtctctacaatatataaaatacgtcaattta |
157 |
Q |
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|||||| | |||||||||| ||||||| ||| ||||||||||| ||||||||| |||||||||| |
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| T |
32708697 |
aatttagtctctaaactatacaaatataataactagtctctacactatataaaaatcgtcaattta |
32708762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 5653929 - 5653893
Alignment:
| Q |
135 |
aatatataaaatacgtcaatttaatctctactattaa |
171 |
Q |
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| T |
5653929 |
aatatataaaattcgtcaatttaatctcaactattaa |
5653893 |
T |
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