View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13484_high_1 (Length: 662)
Name: NF13484_high_1
Description: NF13484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13484_high_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 563; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 19 - 648
Target Start/End: Original strand, 42083031 - 42083660
Alignment:
| Q |
19 |
cctgagtggtggttcatgaccattttggttcttatggttattttggccttggcgtgttgcgaaggctttgacaaacagctccaacttccatggtggggag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
42083031 |
cctgagtggtggttcatgaccattttggttcttatggttattttggccttggcgtgttgcgaaggctttgacaagcagctccaacttccatggtggggag |
42083130 |
T |
|
| Q |
119 |
tcttgctttctctatcaattgcattggtattcactttgccagttggtgtcatccaagcaacaacaaaccaggtaattttttctttcttaaccctccagtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42083131 |
tcttgctttctctatcaattgcattggtattcactttgccagttggtgtcatccaagcaacaacaaaccaggtaattttttctttcttaaccctccagtt |
42083230 |
T |
|
| Q |
219 |
tccaggaaaagagactctggtaaccaggtaattttttgccttaaccctctggtttttaggagacgggaccctggtaacaagatgattaagattgtccagc |
318 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42083231 |
tccagggaaagggactctggtaaccaggtaattttttgccttaaccctctggtgtttaggagacgggaccctggtaacaagatgattaagattgtccagc |
42083330 |
T |
|
| Q |
319 |
aaatgtagnnnnnnnnntaaactagcacatgtttccctggtgtgcagcaagcgggacttaatgtgatcacagagttgatcattgtgtacctataccccgg |
418 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
42083331 |
aaatgtagaaaaataaataaactaacacatgtttcccttgtgtgcagcaagctggacttaatgtgatcacagagttgatcatcgggtacctataccccgg |
42083430 |
T |
|
| Q |
419 |
aaagcctcttgccaatgtagccttcaagacttatggatacatgagcatgtcacaggcacttagtttccttcaagacttcaaattaggacactacatgaaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42083431 |
aaagcctcttgccaatgtagccttcaagacttatggatacatgagcatgtcacaggcacttagtttccttcaagacttcaaattaggacactacatgaaa |
42083530 |
T |
|
| Q |
519 |
attccaccaaaatctatgttcatagtgcaattggtaggaactttggtttcttcaagtgtatgcttcagcacagcatggtggcttctaacaactattccac |
618 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42083531 |
attcctccaaaatctatgttcatagtgcaattggtaggaactttggtttcttcaagtgtatgcttcagcacagcatggtggcttctaacaactattccac |
42083630 |
T |
|
| Q |
619 |
acatatgcgataaatcaatgttgccagatg |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42083631 |
acatatgcgataaatcaatgttgccagatg |
42083660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 345 - 648
Target Start/End: Original strand, 42074777 - 42075080
Alignment:
| Q |
345 |
acatgtttccctggtgtgcagcaagcgggacttaatgtgatcacagagttgatcattgtgtacctataccccggaaagcctcttgccaatgtagccttca |
444 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42074777 |
acatgttttcttggtgtgcagcaagctggacttaatgtgatcacagagttgatcattgggtacctataccctggaaagcctcttgccaatgtagccttca |
42074876 |
T |
|
| Q |
445 |
agacttatggatacatgagcatgtcacaggcacttagtttccttcaagacttcaaattaggacactacatgaaaattccaccaaaatctatgttcatagt |
544 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| |
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|
| T |
42074877 |
agacttatggatacatcagcatggcacaggcacttagtttccttcaagacttcaaattaggtctctacatgaaaattcctccaaaatctatgttcatagt |
42074976 |
T |
|
| Q |
545 |
gcaattggtaggaactttggtttcttcaagtgtatgcttcagcacagcatggtggcttctaacaactattccacacatatgcgataaatcaatgttgcca |
644 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
42074977 |
acagttggtaggaactttggttgcttcaagtgtatacttcggcacagcatggtggcttctaacgactattccacacatatgcgataaatcaatgttgcca |
42075076 |
T |
|
| Q |
645 |
gatg |
648 |
Q |
| |
|
|||| |
|
|
| T |
42075077 |
gatg |
42075080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 359 - 643
Target Start/End: Original strand, 42059494 - 42059778
Alignment:
| Q |
359 |
tgtgcagcaagcgggacttaatgtgatcacagagttgatcattgtgtacctataccccggaaagcctcttgccaatgtagccttcaagacttatggatac |
458 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||| || ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42059494 |
tgtgcagcaagctggactcaatgtgatcacagagttgatcattgggttcctttaccccggaaagcctcttgctaatgtagccttcaagacttatggatac |
42059593 |
T |
|
| Q |
459 |
atgagcatgtcacaggcacttagtttccttcaagacttcaaattaggacactacatgaaaattccaccaaaatctatgttcatagtgcaattggtaggaa |
558 |
Q |
| |
|
|| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |
|
|
| T |
42059594 |
atcagcatggcacaggcacttagtttccttgaagacttcaaattaggacactacatgaaaattcctccaaaagctatgttcatagtacaattggtaggaa |
42059693 |
T |
|
| Q |
559 |
ctttggtttcttcaagtgtatgcttcagcacagcatggtggcttctaacaactattccacacatatgcgataaatcaatgttgcc |
643 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
42059694 |
ctttggttgcttcaagtgtatacttcagcacagcatggtggcttctaacaactattccaaacatatgtgatgcatcaatgttgcc |
42059778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 42059135 - 42059329
Alignment:
| Q |
19 |
cctgagtggtggttcatgaccattttggttcttatggttattttggccttggcgtgttgcgaaggctttgacaaacagctccaacttccatggtggggag |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
42059135 |
cctgagtggtggttcatgatcattttggttcttatggttattttggccttggcgtgttgtgaaggctttggcaagcagctccaacttccttggtggggag |
42059234 |
T |
|
| Q |
119 |
tcttgctttctctatcaattgcattggtattcactttgccagttggtgtcatccaagcaacaacaaaccaggtaattttttctttcttaaccctc |
213 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42059235 |
tcttgctttctctattaattgcattggttttcactttgccaattggtgtcatccaagcaacaacaaaccaggtgattttttctttcttaaccctc |
42059329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 42074507 - 42074741
Alignment:
| Q |
19 |
cctgagtggtggttcatgaccattttggttcttatggttattttggccttggcgtgttgcgaaggctttgacaaacagctccaacttccatggtggggag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42074507 |
cctgagtggtggttcatgaccattttggttcttatgattattttggccttggcgtgttgtgaaggctttgacaaacaactccaacttccatggtggggag |
42074606 |
T |
|
| Q |
119 |
tcttgctttctctatcaattgcattggtattcactttgccagttggtgtcatccaagcaacaacaaaccaggtaattttttctttcttaaccctccagtt |
218 |
Q |
| |
|
|||||||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| |||||||| | ||| |
|
|
| T |
42074607 |
tcttgctttccctattaattgcattggttttcactttgccagttggtgtcattcaagcaacaaccaatcaggtaattttctctttattaacccttcggtt |
42074706 |
T |
|
| Q |
219 |
tccaggaaaagagactctggtaaccaggtaatttt |
253 |
Q |
| |
|
||||| || || |||| |||||||| ||||||| |
|
|
| T |
42074707 |
tccagaggaaaaggctctagtaaccagataatttt |
42074741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 36524002 - 36523891
Alignment:
| Q |
75 |
ttgcgaaggctttgacaaacagctccaacttccatggtggggagtcttgctttctctatcaattgcattggtattcactttgccagttggtgtcatccaa |
174 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| | ||||| |||||| ||||||| || ||| |
|
|
| T |
36524002 |
ttgcgaaggctttggaaaacagctccaacttccatggtggggaatcttactttctctagcaattgcattgatcttcaccttgccaattggtgttattcaa |
36523903 |
T |
|
| Q |
175 |
gcaacaacaaac |
186 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36523902 |
gcaacaacaaac |
36523891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 375 - 607
Target Start/End: Complemental strand, 36523878 - 36523646
Alignment:
| Q |
375 |
cttaatgtgatcacagagttgatcattgtgtacctataccccggaaagcctcttgccaatgtagccttcaagacttatggatacatgagcatgtcacagg |
474 |
Q |
| |
|
||||||||||||||||||||| | |||| | | | || || |||||||| ||||| |||||||| ||||| || ||||| |||| |||||| ||| | |
|
|
| T |
36523878 |
cttaatgtgatcacagagttggtaattggtttcatctatcctggaaagccacttgctaatgtagctttcaaaacatatggccacatcagcatggtacaag |
36523779 |
T |
|
| Q |
475 |
cacttagtttccttcaagacttcaaattaggacactacatgaaaattccaccaaaatctatgttcatagtgcaattggtaggaactttggtttcttcaag |
574 |
Q |
| |
|
|||| | || ||| |||||||||||||||| || || |||||||||||||||||||| |||||||| ||||| | ||||| ||| | ||||||||| |
|
|
| T |
36523778 |
cactagggtttcttgaagacttcaaattaggccattatatgaaaattccaccaaaatcaatgttcattgtgcagctagtaggcactgtagtttcttcatc |
36523679 |
T |
|
| Q |
575 |
tgtatgcttcagcacagcatggtggcttctaac |
607 |
Q |
| |
|
||| ||| | |||||||||||||||||||| |
|
|
| T |
36523678 |
tgtccactttggaacagcatggtggcttctaac |
36523646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 36530834 - 36530724
Alignment:
| Q |
76 |
tgcgaaggctttgacaaacagctccaacttccatggtggggagtcttgctttctctatcaattgcattggtattcactttgccagttggtgtcatccaag |
175 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||||||||||| |||| ||||||||| |||||||||| | ||||| || ||| |||||||||| ||| |
|
|
| T |
36530834 |
tgcgaaggcttcggcaagcagctccaacttccatggtggggaatcttactttctctaacaattgcattaattttcaccttaccaattggtgtcattgaag |
36530735 |
T |
|
| Q |
176 |
caacaacaaac |
186 |
Q |
| |
|
||||||||||| |
|
|
| T |
36530734 |
caacaacaaac |
36530724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 79 - 184
Target Start/End: Complemental strand, 36536443 - 36536338
Alignment:
| Q |
79 |
gaaggctttgacaaacagctccaacttccatggtggggagtcttgctttctctatcaattgcattggtattcactttgccagttggtgtcatccaagcaa |
178 |
Q |
| |
|
|||||||| | ||| |||||||||||||||||||||||| |||| || || |||||||||||||| || ||||| || ||| |||||||||| |||||| |
|
|
| T |
36536443 |
gaaggcttcggcaagcagctccaacttccatggtggggaatcttactatcactatcaattgcattagttttcaccttaccaattggtgtcattgaagcaa |
36536344 |
T |
|
| Q |
179 |
caacaa |
184 |
Q |
| |
|
|||||| |
|
|
| T |
36536343 |
caacaa |
36536338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 417 - 548
Target Start/End: Complemental strand, 36530669 - 36530538
Alignment:
| Q |
417 |
ggaaagcctcttgccaatgtagccttcaagacttatggatacatgagcatgtcacaggcacttagtttccttcaagacttcaaattaggacactacatga |
516 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| || ||||| | || || ||| ||| |||||| |||| ||| |||||||||||||| ||||| |||| |
|
|
| T |
36530669 |
ggaaagccgcttgctaatgtagctttcaaaacatatggccatatcagtatggtacaagcacttggttttcttggtgacttcaaattaggccactatatga |
36530570 |
T |
|
| Q |
517 |
aaattccaccaaaatctatgttcatagtgcaa |
548 |
Q |
| |
|
||||| |||||||||| |||||||| |||||| |
|
|
| T |
36530569 |
aaattgcaccaaaatcaatgttcattgtgcaa |
36530538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 547
Target Start/End: Complemental strand, 36536323 - 36536151
Alignment:
| Q |
375 |
cttaatgtgatcacagagttgatcattgtgtacctataccccggaaagcctcttgccaatgtagccttcaagacttatggatacatgagcatgtcacagg |
474 |
Q |
| |
|
||||||||||||||||||||| | |||| | | || || |||||||| || || |||||||| ||||| || ||||| | | ||||||| ||| | |
|
|
| T |
36536323 |
cttaatgtgatcacagagttggtaattggtttcacctatccaggaaagccactagctaatgtagctttcaaaacatatggccatacgagcatggtacaag |
36536224 |
T |
|
| Q |
475 |
cacttagtttccttcaagacttcaaattaggacactacatgaaaattccaccaaaatctatgttcatagtgca |
547 |
Q |
| |
|
||||| |||| || |||||||||||||| ||||| |||||||||||||||||||| ||||| || ||||| |
|
|
| T |
36536223 |
cacttggttttctcggtgacttcaaattaggccactatatgaaaattccaccaaaatcaatgtttattgtgca |
36536151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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