View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13484_high_11 (Length: 234)
Name: NF13484_high_11
Description: NF13484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13484_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 31938198 - 31938418
Alignment:
| Q |
18 |
cctactaacagactaatctggtacc--------caaagaccaagcgaaaatcatgttattgatccaaagaa--cacactaatcaacacaaccacaaaatt |
107 |
Q |
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| T |
31938198 |
cctactaacagactaatctggtacctttctcaccaaagaccaagcgaaaatcatgttattgatccaaagaattcacactaatcaacacaaccacaaaatt |
31938297 |
T |
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| Q |
108 |
ttatcaattgcaagatgaatttctgcacacttaaaccttaattttaaactctatagcaattcagcctgttaatgcaaagcatgccatcattatcttctgt |
207 |
Q |
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| T |
31938298 |
ttatcaattgcaagatgaatttctgcacacttaaacttgaattttaaactc--tagcaattcagcctgttaatgcaaagcatgccatcattatcttctgt |
31938395 |
T |
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| Q |
208 |
taatgaaaatgttcttttaaaga |
230 |
Q |
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| T |
31938396 |
taatgaaaatgttcttttaaaga |
31938418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 5638397 - 5638537
Alignment:
| Q |
46 |
agaccaagcgaaaatcatgttattgatccaaagaa--cacactaatcaacacaaccacaaaattttatcaattgcaagatgaatttctgcacacttaaac |
143 |
Q |
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| T |
5638397 |
agaccaagcgaaaataatgctaataatccaaagaattcacactaaacaagacagccacaaaattatatcaattgcaagatatattt-tcttgacttaaac |
5638495 |
T |
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| Q |
144 |
cttaattttaaactctatagcaattcagcctgttaatgcaaa |
185 |
Q |
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| T |
5638496 |
ctgaattttaaactctgcagcaactcaacttgttaaagcaaa |
5638537 |
T |
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