View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13484_high_5 (Length: 349)
Name: NF13484_high_5
Description: NF13484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13484_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 27975667 - 27975985
Alignment:
| Q |
14 |
gatacaacactttgtctacttctccccagtttgggtaccaacgcacttttccatcttttagttcgaccaagatcttagcccattctctagcactatagct |
113 |
Q |
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| T |
27975667 |
gatacaacactttgtctacttctccccagtttgggtaccaacgcacttttccatcttttagttcgaccaagatcttagcccattctctagcattgtagct |
27975766 |
T |
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| Q |
114 |
ctttaagcctagcaactttaagtcaacaatagggcaatacttaagatcactaggcttaaagagccacatatagaatgggtcaatatatttgtattctctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27975767 |
ctttaagcctagcaactttaagtcaacaatagggcaatacttaagatcgctaggcttaaagagccacatatagaatgggtcaatatatttgtattctctt |
27975866 |
T |
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| Q |
214 |
tgaaaaatatggccacacatccagacatagagaacagacagacaacataatattcgcttacccgtcttcttacgacaaacgttcaaggtataaaacacgt |
313 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27975867 |
tgaaaaatatgaccacacatccagacatagagaacagacagacaacataacattcgcttacccgtcttcttacgacaaacgttcaaggtataaaacacat |
27975966 |
T |
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| Q |
314 |
ccgccaacactgcatgcac |
332 |
Q |
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||||||||||||||||||| |
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| T |
27975967 |
ccgccaacactgcatgcac |
27975985 |
T |
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