View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13484_high_6 (Length: 333)

Name: NF13484_high_6
Description: NF13484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13484_high_6
NF13484_high_6
[»] chr7 (32 HSPs)
chr7 (20-333)||(21791852-21792153)
chr7 (20-333)||(21689242-21689555)
chr7 (20-214)||(21646691-21646885)
chr7 (20-214)||(21681598-21681792)
chr7 (24-190)||(21808175-21808341)
chr7 (22-214)||(15713571-15713763)
chr7 (21-165)||(21628122-21628266)
chr7 (20-180)||(21664080-21664240)
chr7 (20-183)||(21652048-21652211)
chr7 (20-183)||(21788208-21788371)
chr7 (20-165)||(21704640-21704785)
chr7 (20-189)||(21623160-21623335)
chr7 (22-165)||(21785403-21785546)
chr7 (20-183)||(21714162-21714325)
chr7 (20-160)||(21992175-21992324)
chr7 (20-180)||(21771943-21772103)
chr7 (20-162)||(21745532-21745674)
chr7 (20-89)||(21764135-21764204)
chr7 (234-286)||(21663995-21664047)
chr7 (20-171)||(21725887-21726038)
chr7 (239-286)||(21992070-21992117)
chr7 (249-286)||(21704543-21704580)
chr7 (249-286)||(21741006-21741043)
chr7 (234-282)||(21808364-21808412)
chr7 (239-286)||(21681538-21681585)
chr7 (239-277)||(21622936-21622974)
chr7 (249-286)||(21628025-21628062)
chr7 (234-286)||(15713511-15713563)
chr7 (249-284)||(21651971-21652006)
chr7 (252-286)||(21725796-21725830)
chr7 (252-286)||(21771861-21771895)
chr7 (249-286)||(21763965-21764002)
[»] scaffold0182 (2 HSPs)
scaffold0182 (20-183)||(25289-25452)
scaffold0182 (252-286)||(34434-34468)
[»] chr1 (1 HSPs)
chr1 (31-127)||(18192250-18192346)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 21792153 - 21791852
Alignment:
Q  20 ctgcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  21792153 ctgcccacataagcttgtacttctctcctaactccagatctgtactgccatgatggatgggacctattgatacaaaccttgggatgtaatgcttctcaaa 21792054  T
Q  120 attttttctctttctgagatactctgccaccctttgtatctttggttttgaacttgggggtgttggatttgtatctatgtacctttgtagctccatttgt 219  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  21792053 attttctctctttctgagatactctgccaccctttgtatctttggttttgaacttgggggtgttggatttgtatctatgtacctttgtagct-------- 21791962  T
Q  220 aaccccacaacctgttttacaagggtaggttgggatgccatcattcattcaatataataatggttgaaacttttacctaatgcatatataatataatatg 319  Q
        ||||||| | | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21791961 ----ccacaacttttctttcaagggtaggttgggatgccatcattcattcaatataataatggttgaaacttttacctaatgcatatataatataatatg 21791866  T
Q  320 ggctcagtgtagtg 333  Q
    ||||||||||||||    
T  21791865 ggctcagtgtagtg 21791852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 21689555 - 21689242
Alignment:
Q  20 ctgcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaa 119  Q
    |||||||||||||||||||||||||||||||||  |||  | || ||||||||||||| |||||| |||| |  ||||||||||| |||| |||||||||    
T  21689555 ctgcccacataagcttgtacttctctcctaactttagagatttattgccatgatggataggaccttttgacatcaacctcggggtctaatgcttctcaaa 21689456  T
Q  120 attttttctctttctgagatactctgccaccctttgtatctttggttttgaacttgggggtgttggatttgtatctatgtacctttgtagctccatttgt 219  Q
     |||| ||| |||||||||||||||  |||||||||||||||||||  |||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  21689455 tttttctctatttctgagatactcttgcaccctttgtatctttggtcgtgaactttcgggtgttggatttgtatctatgtacctttgtagctccatttgt 21689356  T
Q  220 aaccccacaacctgttttacaagggtaggttgggatgccatcattcattcaatataataatggttgaaacttttacctaatgcatatataatataatatg 319  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21689355 aaccccacaaccttttttacaagggtaggttgggatgccatcattcattcaatataataatggttgaaacttttacctaatgcatatataatataatatg 21689256  T
Q  320 ggctcagtgtagtg 333  Q
    ||||||||||||||    
T  21689255 ggctcagtgtagtg 21689242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 21646885 - 21646691
Alignment:
Q  20 ctgcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaa 119  Q
    ||||||||||||||||||| |||||||||| || ||| |||| | || |||||||||| ||||||||||| || ||| | |||||||||| || ||||||    
T  21646885 ctgcccacataagcttgtatttctctcctatcttcagctttggattgtcatgatggataggacctattgacaccaacttgggggtgtaatgctcctcaaa 21646786  T
Q  120 attttttctctttctgagatactctgccaccctttgtatctttggttttgaacttgggggtgttggatttgtatctatgtacctttgtagctcca 214  Q
     ||| |||| ||||||||||||| || |||||||||||||||||||  |||| || |||||||| ||| | ||||||||||||| ||||||||||    
T  21646785 ttttgttctatttctgagatactgtggcaccctttgtatctttggtcgtgaattttggggtgtttgatctatatctatgtacctatgtagctcca 21646691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 21681792 - 21681598
Alignment:
Q  20 ctgcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaa 119  Q
    |||||||||||||||||||||||||||||||||  |||| |||| ||||||||||||| ||||||||||| |||||| | ||| |||||| || || |||    
T  21681792 ctgcccacataagcttgtacttctctcctaactttagatctgtattgccatgatggataggacctattgacacaaacttggggctgtaatgctccttaaa 21681693  T
Q  120 attttttctctttctgagatactctgccaccctttgtatctttggttttgaacttgggggtgttggatttgtatctatgtacctttgtagctcca 214  Q
     ||| |||| ||| ||| ||||  || |||||||||||||||||||  |||| || |||||||| ||||||||||||||||  ||||||||||||    
T  21681692 ttttgttctatttttgacataccgtggcaccctttgtatctttggtcgtgaattttggggtgtttgatttgtatctatgtatatttgtagctcca 21681598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 21808175 - 21808341
Alignment:
Q  24 ccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaaattt 123  Q
    ||||||||||||||||||||||||||||| ||||||| || | ||||||||||| |||||||||||||| ||| | || | ||||| |||||||| ||||    
T  21808175 ccacataagcttgtacttctctcctaacttcagatttatatttccatgatggataggacctattgataccaacttgggtgagtaatgcttctcaagattt 21808274  T
Q  124 tttctctttctgagatactctgccaccctttgtatctttggttttgaacttgggggtgttggatttg 190  Q
     |||| |||||||||||||| |||||||||||||||||||||  |||| || ||||| || ||||||    
T  21808275 gttctatttctgagatactcagccaccctttgtatctttggtcgtgaattttggggtatttgatttg 21808341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 15713763 - 15713571
Alignment:
Q  22 gcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaaat 121  Q
    ||||||||||||||||||||||| ||| |||  ||||||||| || |||||||||| || |||||||| || ||| | || | ||||| | ||||| |||    
T  15713763 gcccacataagcttgtacttctcccctgactttagatttgtattgtcatgatggatagggcctattgaaaccaacttaggtgcgtaatgcatctcataat 15713664  T
Q  122 tttttctctttctgagatactctgccaccctttgtatctttggttttgaacttgggggtgttggatttgtatctatgtacctttgtagctcca 214  Q
    |||| || |||||||||||  ||| |||||||||||||||||||  ||||||| |||||||| | ||||||| |||||| |||||||||||||    
T  15713663 ttttactttttctgagatagcctggcaccctttgtatctttggtcgtgaactttggggtgtttgctttgtatttatgtaactttgtagctcca 15713571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 21628266 - 21628122
Alignment:
Q  21 tgcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaaa 120  Q
    |||||||| ||||||||||||||||||||  | |||||||||||||||||||||||| ||||||||||| |||||| | || | |||||||||| |||||    
T  21628266 tgcccacacaagcttgtacttctctcctatgttcagatttgtactgccatgatggataggacctattgacacaaacttgggtgagtaatacttcccaaaa 21628167  T
Q  121 ttttttctctttctgagatactctgccaccctttgtatctttggt 165  Q
    | |||| | ||||||||||  || |||||||||||||||||||||    
T  21628166 tcttttttatttctgagatgatcggccaccctttgtatctttggt 21628122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 21664240 - 21664080
Alignment:
Q  20 ctgcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaa 119  Q
    ||||||||||||||||||||||| ||||||||| ||||| |||| ||||||||||||| ||||||||||| |  ||| | || | |||||||||||||||    
T  21664240 ctgcccacataagcttgtacttccctcctaacttcagatctgtattgccatgatggataggacctattgacaggaacttgggtgagtaatacttctcaaa 21664141  T
Q  120 attttttctctttctgagatactctgccaccctttgtatctttggttttgaacttgggggt 180  Q
     |||||||| ||||||||||  | || |||||||||||||||||||  ||||||| |||||    
T  21664140 gttttttctgtttctgagattgtgtggcaccctttgtatctttggtcgtgaactttggggt 21664080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 21652211 - 21652048
Alignment:
Q  20 ctgcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaa 119  Q
    |||||||||||||||| |||| |||||||   | || ||||||| || |||||||||| ||||||||||| |||||| | ||||||||||  ||||||||    
T  21652211 ctgcccacataagcttatactcctctcctggtttcatatttgtattgtcatgatggataggacctattgaaacaaacttgggggtgtaatgtttctcaaa 21652112  T
Q  120 attttttctctttctgagatactctgccaccctttgtatctttggttttgaacttgggggtgtt 183  Q
    ||| ||||| ||||||||||||| || |||||||||||||||||||  |||| || ||||||||    
T  21652111 attgtttctatttctgagatactgtggcaccctttgtatctttggtcgtgaattttggggtgtt 21652048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 21788371 - 21788208
Alignment:
Q  20 ctgcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaa 119  Q
    ||||||||||||||||||||||||||||||||| || ||||||  || |||||||||| |||||||  || |  ||| | || | ||||| |||||||||    
T  21788371 ctgcccacataagcttgtacttctctcctaacttcaaatttgtgttgtcatgatggataggacctaccgacaacaacttgggcgagtaatgcttctcaaa 21788272  T
Q  120 attttttctctttctgagatactctgccaccctttgtatctttggttttgaacttgggggtgtt 183  Q
     |||||||| ||||||||||||||||||||||||||||| || |||  |||| || ||||||||    
T  21788271 gttttttctatttctgagatactctgccaccctttgtattttcggtcgtgaattttggggtgtt 21788208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 21704785 - 21704640
Alignment:
Q  20 ctgcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaa 119  Q
    ||||||||||||||||||||||||||||||||| |||| ||| | || |||||||||| |||||||| || || ||| | || | ||||| || ||||||    
T  21704785 ctgcccacataagcttgtacttctctcctaacttcagagttggattgtcatgatggataggacctatcgacactaacttgggtgagtaatgctgctcaaa 21704686  T
Q  120 attttttctctttctgagatactctgccaccctttgtatctttggt 165  Q
     ||||||||  ||||||||||||||  |||||||||||||||||||    
T  21704685 gttttttctacttctgagatactcttgcaccctttgtatctttggt 21704640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 21623335 - 21623160
Alignment:
Q  20 ctgcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaa 119  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| || ||| | || | ||||| |||  ||||    
T  21623335 ctgcccacataagcttgtacttctctcctaacttcagatttgtattgccatgatggataggacctattgacaccaacttgggtgagtaatgcttggcaaa 21623236  T
Q  120 attttttctctt------tctgagatactctgccaccctttgtatctttggttttgaacttgggggtgttggattt 189  Q
    |   ||||| ||      || || ||||||||||||||||||||||||||||  |||||||  |||||||||||||    
T  21623235 aaaatttctatttccgaatccgacatactctgccaccctttgtatctttggtcgtgaactttcgggtgttggattt 21623160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 21785546 - 21785403
Alignment:
Q  22 gcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaaat 121  Q
    |||||||||||||||||||||||||||  || |||||||| | || |||||||||| ||||||||||| || ||| | || | ||||| ||||||||| |    
T  21785546 gcccacataagcttgtacttctctcctgtcttcagatttggattgtcatgatggataggacctattgacactaacttgggtgagtaatgcttctcaaagt 21785447  T
Q  122 tttttctctttctgagatactctgccaccctttgtatctttggt 165  Q
    |||| || ||||| |||||||||  |||||||||||||||||||    
T  21785446 ttttcctatttcttagatactcttgcaccctttgtatctttggt 21785403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 21714325 - 21714162
Alignment:
Q  20 ctgcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaa 119  Q
    ||||||||||||| |||||||||||||||  || |||||||| | || |||||||||| ||||||| ||| |||||| | || | ||||| |||||||||    
T  21714325 ctgcccacataagtttgtacttctctcctttcttcagatttggattgtcatgatggataggacctaatgacacaaacttgggtgagtaatgcttctcaaa 21714226  T
Q  120 attttttctctttctgagatactctgccaccctttgtatctttggttttgaacttgggggtgtt 183  Q
    |||| |||| ||||||| |   ||  |||||||||||||||| |||  |||| || ||||||||    
T  21714225 atttgttctatttctgaaacggtcaaccaccctttgtatcttcggtcgtgaattttggggtgtt 21714162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 21992324 - 21992175
Alignment:
Q  20 ctgcccacataagcttgtacttctctcctaactccagatttg---------tactgccatgatggatgggacctattgatacaaacctcggggtgtaata 110  Q
    |||||||| |||||||||||||||||||||||| ||||||||         || ||||||||||||| ||||||||||| || ||  | || | ||| |     
T  21992324 ctgcccacgtaagcttgtacttctctcctaacttcagatttgcattgcttgtattgccatgatggataggacctattgacaccaatttgggtgagtagtg 21992225  T
Q  111 cttctcaaaattttttctctttctgagatactctgccaccctttgtatct 160  Q
    ||||||||| | |||||| ||| |||||||||||||||||||||||||||    
T  21992224 cttctcaaagtcttttctatttttgagatactctgccaccctttgtatct 21992175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 21772103 - 21771943
Alignment:
Q  20 ctgcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaa 119  Q
    ||||||||||||| |||||||||||| ||||   |||||||||  |   |||||| || ||||||||||| ||| || | || | ||||| |||||||||    
T  21772103 ctgcccacataagtttgtacttctctgctaatatcagatttgtgttatgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaa 21772004  T
Q  120 attttttctctttctgagatactctgccaccctttgtatctttggttttgaacttgggggt 180  Q
     |||||||| ||||||||| ||| |  ||||||||||||||| ||| ||||| || |||||    
T  21772003 gttttttctatttctgagagactttagcaccctttgtatcttcggtcttgaattttggggt 21771943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 21745674 - 21745532
Alignment:
Q  20 ctgcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaa 119  Q
    |||||||||||||||| ||||  ||||||  ||  ||||||| | || |||||||||| ||||||| ||| || ||| | || | ||||| |||||||||    
T  21745674 ctgcccacataagcttatactcttctcctgtctttagatttggattgtcatgatggataggacctaatgacaccaacttgggtgagtaatgcttctcaaa 21745575  T
Q  120 attttttctctttctgagatactctgccaccctttgtatcttt 162  Q
    |||| |||| ||| ||||||  ||| |||||||||||||||||    
T  21745574 atttgttctatttatgagatggtctaccaccctttgtatcttt 21745532  T

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Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 21764204 - 21764135
Alignment:
Q  20 ctgcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattga 89  Q
    |||||||| |||||||||||||||||||||||| ||||| ||  ||| |||||||||| |||||||||||    
T  21764204 ctgcccacttaagcttgtacttctctcctaacttcagatctgatctgtcatgatggataggacctattga 21764135  T

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Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 21664047 - 21663995
Alignment:
Q  234 ttttacaagggtaggttgggatgccatcattcattcaatataataatggttga 286  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  21664047 tttttcaagggtagtttgggatgccatcattctttcaatataataatggttga 21663995  T

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Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 21726038 - 21725887
Alignment:
Q  20 ctgcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaa 119  Q
    ||||||||||||| ||||||| |||| ||||   |||||||||  |   |||||| || ||||||||||| ||| || | || | ||||| |||||||||    
T  21726038 ctgcccacataagtttgtactactctgctaatatcagatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaa 21725939  T
Q  120 attttttctctttctgagatactctgccaccctttgtatctttggttttgaa 171  Q
     |||||||| ||||||||| ||| |  ||||||||||||||| ||| |||||    
T  21725938 gttttttctatttctgagagactttagcaccctttgtatcttcggtcttgaa 21725887  T

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Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 21992117 - 21992070
Alignment:
Q  239 caagggtaggttgggatgccatcattcattcaatataataatggttga 286  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||    
T  21992117 caagggaagtttgggatgccatcattcattcaatataataatggttga 21992070  T

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Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 21704580 - 21704543
Alignment:
Q  249 ttgggatgccatcattcattcaatataataatggttga 286  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21704580 ttgggatgccatcattcattcaatataataatggttga 21704543  T

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Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 21741043 - 21741006
Alignment:
Q  249 ttgggatgccatcattcattcaatataataatggttga 286  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21741043 ttgggatgccatcattcattcaatataataatggttga 21741006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 21808364 - 21808412
Alignment:
Q  234 ttttacaagggtaggttgggatgccatcattcattcaatataataatgg 282  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||||||    
T  21808364 tttttcaagggtagtttgggattccatcattcattcaatataataatgg 21808412  T

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Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 21681585 - 21681538
Alignment:
Q  239 caagggtaggttgggatgccatcattcattcaatataataatggttga 286  Q
    ||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  21681585 caagggtagtttgggatgacatcattcattcaatgtaataatggttga 21681538  T

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Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 21622974 - 21622936
Alignment:
Q  239 caagggtaggttgggatgccatcattcattcaatataat 277  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  21622974 caagggtagtttgggatgccatcattcattcaatataat 21622936  T

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Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 21628062 - 21628025
Alignment:
Q  249 ttgggatgccatcattcattcaatataataatggttga 286  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  21628062 ttgggatgccatcattctttcaatataataatggttga 21628025  T

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Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 15713563 - 15713511
Alignment:
Q  234 ttttacaagggtaggttgggatgccatcattcattcaatataataatggttga 286  Q
    |||| ||||||||| ||| |||||||||||||||||| |||||| ||||||||    
T  15713563 tttttcaagggtagtttgcgatgccatcattcattcattataatcatggttga 15713511  T

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Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 284
Target Start/End: Complemental strand, 21652006 - 21651971
Alignment:
Q  249 ttgggatgccatcattcattcaatataataatggtt 284  Q
    |||||||||||||||||| |||||||||||||||||    
T  21652006 ttgggatgccatcattcaatcaatataataatggtt 21651971  T

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Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 21725830 - 21725796
Alignment:
Q  252 ggatgccatcattcattcaatataataatggttga 286  Q
    ||||||||||||||||||||||| |||||||||||    
T  21725830 ggatgccatcattcattcaatatgataatggttga 21725796  T

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Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 21771895 - 21771861
Alignment:
Q  252 ggatgccatcattcattcaatataataatggttga 286  Q
    ||||||||||||||||||||||| |||||||||||    
T  21771895 ggatgccatcattcattcaatatgataatggttga 21771861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 21764002 - 21763965
Alignment:
Q  249 ttgggatgccatcattcattcaatataataatggttga 286  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  21764002 ttgggatgccatcattcattcaatacactaatggttga 21763965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 25452 - 25289
Alignment:
Q  20 ctgcccacataagcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaa 119  Q
    |||||||| |||||||||||||||||||||||| ||||||| || || |||||||||| ||||||||||| || ||| | ||  |||| ||||||   ||    
T  25452 ctgcccacttaagcttgtacttctctcctaacttcagatttttattgtcatgatggataggacctattgacaccaacttgggtttgtagtacttcctcaa 25353  T
Q  120 attttttctctttctgagatactctgccaccctttgtatctttggttttgaacttgggggtgtt 183  Q
    ||||  | |||||||| | || | |||||||||||||||||| |||  |||| || ||||||||    
T  25352 atttggtatctttctgcggtaatatgccaccctttgtatcttgggtggtgaattttggggtgtt 25289  T

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Target: scaffold0182; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 34468 - 34434
Alignment:
Q  252 ggatgccatcattcattcaatataataatggttga 286  Q
    ||||||||||||||||||||||| |||||||||||    
T  34468 ggatgccatcattcattcaatatgataatggttga 34434  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 18192250 - 18192346
Alignment:
Q  31 agcttgtacttctctcctaactccagatttgtactgccatgatggatgggacctattgatacaaacctcggggtgtaatacttctcaaaattttttc 127  Q
    |||||||||||||||| |||||||| |||||  |  ||||||||||| ||||| |||||||| ||  | || | ||||| ||||||||||| |||||    
T  18192250 agcttgtacttctctcataactccaaatttgggcgaccatgatggataggacccattgataccaatttgggcgagtaatgcttctcaaaatcttttc 18192346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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