View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13484_low_12 (Length: 269)
Name: NF13484_low_12
Description: NF13484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13484_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 31938544 - 31938783
Alignment:
| Q |
1 |
tgtgttctgttttcctaaaccaaacttaatactttcaatttagcaagaaaaatagtataggagttgaagtgtcattcaatcaatcactgtttttaaacat |
100 |
Q |
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| T |
31938544 |
tgtgttctgttttcctaaaccaatcttaatactttcaatttaacaagaaaaatagtataggagttgaagtgtcattcaatcaaacactgtttttaaacat |
31938643 |
T |
|
| Q |
101 |
tcccatttgccatatatttgtgttaccagataaatcaaatcttgcaaaatcatcaccgaaatgtgaatattaaatcatgatcaataatgtcatcagttgt |
200 |
Q |
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||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31938644 |
tcccatttgccatatttttttgttatcagataaatcaaatcttgcaaaatcatcaccgaaatgtgaatattaaatcatgatcaataatgtcatcagctgt |
31938743 |
T |
|
| Q |
201 |
atgaacattcattcatacaattccagtgcctgaatattct |
240 |
Q |
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| T |
31938744 |
acgaacattcattcatacaattccatggcctgaatattct |
31938783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 13534969 - 13535049
Alignment:
| Q |
145 |
caaaatcatcaccgaaatgtgaatattaaatcatgatcaataatgtcatcagttgtatgaacattcattcatacaattcca |
225 |
Q |
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| T |
13534969 |
caaaatcatcaccaaagtgtgaatcataaatcattataaataatgtcatcaattgtacaaacattcaatcatacaattcca |
13535049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 32671548 - 32671582
Alignment:
| Q |
204 |
aacattcattcatacaattccagtgcctgaatatt |
238 |
Q |
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| T |
32671548 |
aacattcattcatacaattccagggcctgaatatt |
32671582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 9388971 - 9389139
Alignment:
| Q |
67 |
aagtgtcattcaatcaatcactgttttt-aaacattcccatttgccata-tatttgtgttaccagataaatcaaatcttgcaaaatcatcaccgaaatgt |
164 |
Q |
| |
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|||||||||| |||||||||| |||||| ||||||| | |||||||||| | ||||| || ||||||||| |||||||||||||||||||||||| |
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| T |
9388971 |
aagtgtcattaaatcaatcacagtttttcaaacatttctatttgccatactgtttgtttt--cagataaat-----cttgcaaaatcatcaccgaaatgt |
9389063 |
T |
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| Q |
165 |
gaatattaaatcatgatcaataatgtcatcagttgtatgaacattcattcatacaattccagtgcctgaatattct |
240 |
Q |
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| T |
9389064 |
gaatattaaatcattataaataatgtcatcagttgtacaaacattcattcatacaattccagggcttgaatattct |
9389139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 19810430 - 19810358
Alignment:
| Q |
162 |
tgtgaatattaaatcatgatcaataatgtcatcagttgtatgaacattcattcatacaattccagtgcctgaa |
234 |
Q |
| |
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| T |
19810430 |
tgtgaatcttaagtcattataaataatatcatcaattgtacaaacattcaatcatacaattccagggcctgaa |
19810358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1336700 - 1336766
Alignment:
| Q |
1 |
tgtgttctgttttcctaaaccaaacttaatactttcaatttagcaagaaaaatagtataggagttga |
67 |
Q |
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| T |
1336700 |
tgtgttttgttttcctaaaccaaacttaatactttcaatttaacaagacaaatagtataggaattga |
1336766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 1336890 - 1336938
Alignment:
| Q |
190 |
tcatcagttgtatgaacattcattcatacaattccagtgcctgaatatt |
238 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
1336890 |
tcatcagttgtaggaacattcattcatacaattccaggccctgaatatt |
1336938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 1336816 - 1336864
Alignment:
| Q |
67 |
aagtgtcattcaatcaatcactgtttttaaacattcccatttgccatat |
115 |
Q |
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|||||||| | ||||||||| ||||||||||||| ||||||||||||| |
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| T |
1336816 |
aagtgtcagtaaatcaatcatagtttttaaacatttccatttgccatat |
1336864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 5638949 - 5638983
Alignment:
| Q |
137 |
aaatcttgcaaaatcatcaccgaaatgtgaatatt |
171 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
5638949 |
aaatcttgcaaaatcatcaccgaagtgtgaatatt |
5638983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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