View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13484_low_2 (Length: 537)

Name: NF13484_low_2
Description: NF13484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13484_low_2
NF13484_low_2
[»] chr7 (1 HSPs)
chr7 (118-534)||(48883823-48884246)
[»] chr8 (7 HSPs)
chr8 (18-172)||(15349251-15349405)
chr8 (257-317)||(12195541-12195601)
chr8 (257-317)||(12439969-12440029)
chr8 (258-317)||(12200559-12200618)
chr8 (258-317)||(12444987-12445046)
chr8 (18-66)||(4030327-4030375)
chr8 (275-307)||(4962325-4962357)
[»] chr4 (36 HSPs)
chr4 (18-188)||(48899092-48899262)
chr4 (18-171)||(48870929-48871082)
chr4 (18-171)||(48876233-48876386)
chr4 (18-171)||(48886615-48886768)
chr4 (328-476)||(48852743-48852890)
chr4 (48-172)||(48864403-48864527)
chr4 (424-470)||(48891495-48891541)
chr4 (411-476)||(49048512-49048577)
chr4 (48-188)||(45365789-45365929)
chr4 (48-186)||(45371643-45371781)
chr4 (425-479)||(48898784-48898838)
chr4 (411-475)||(45372008-45372072)
chr4 (426-476)||(7237695-7237745)
chr4 (426-476)||(7771457-7771507)
chr4 (426-476)||(7790142-7790192)
chr4 (411-473)||(49044126-49044188)
chr4 (278-383)||(50669234-50669338)
chr4 (108-172)||(7790448-7790512)
chr4 (48-181)||(45384459-45384594)
chr4 (406-466)||(48735334-48735394)
chr4 (108-188)||(49043797-49043877)
chr4 (328-380)||(50250626-50250677)
chr4 (275-386)||(7773630-7773740)
chr4 (118-189)||(48853032-48853103)
chr4 (118-188)||(7878735-7878805)
chr4 (426-476)||(50250735-50250785)
chr4 (106-188)||(50666667-50666749)
chr4 (135-188)||(7773481-7773534)
chr4 (275-308)||(7877969-7878002)
chr4 (411-476)||(45384825-45384890)
chr4 (124-181)||(48147358-48147415)
chr4 (424-469)||(48147663-48147708)
chr4 (108-181)||(48156058-48156131)
chr4 (291-372)||(48863413-48863493)
chr4 (119-172)||(49038518-49038571)
chr4 (409-457)||(48156364-48156412)
[»] chr3 (2 HSPs)
chr3 (48-188)||(47451469-47451609)
chr3 (18-73)||(11015030-11015085)
[»] chr5 (4 HSPs)
chr5 (118-172)||(42561972-42562026)
chr5 (424-472)||(179112-179160)
chr5 (135-188)||(9120115-9120168)
chr5 (148-188)||(179410-179450)
[»] chr6 (2 HSPs)
chr6 (411-476)||(21015886-21015951)
chr6 (411-479)||(21979571-21979639)
[»] chr1 (1 HSPs)
chr1 (135-186)||(24310570-24310621)


Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 118 - 534
Target Start/End: Complemental strand, 48884246 - 48883823
Alignment:
Q  118 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccattattcaactttatcatcattgtacctccaccaacttagaaattct 217  Q
    |||||||||| |||| ||||||||    | |||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||| |||||||||||||    
T  48884246 aagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatcatcattgtacccccaccgacttagaaattct 48884147  T
Q  218 ccaaatgcccataaaccacaacttgtgtgtatggtgtcataatcatctgggagacggatctctaacaatttcttttccattaaatcaaaggcagcaataa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48884146 ccaaatgcccataaaccacaacttgtgtgtatggtgtcataatcatctgggagacggatctctaacagtttcttttccattaaatcaaaggcagcaataa 48884047  T
Q  318 tatcaacacttaaatcataacgaaaaaaccaaccaatgaatagccccgttaaagagaaaccctattctgtcatcatcagaggc-------agccataaac 410  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||       | ||||||||    
T  48884046 tatccacacttaaatcataacgaaaaaaccaaccaatgaatagccccattaaagggaaaccctattctgtcatcatcagaggcatccataaaccataaac 48883947  T
Q  411 gggaagtgagcatcctcaatttctttccacatattatctctcaatgagaaacactccaaatgtgataaattatcagcagatgatgtatcctcataggaca 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48883946 gggaagtgagcatcctcaatttctttccacatattatctctcaatgagaaacactccaaatgtgataaattatcagcaaatgatgtatcctcataggaca 48883847  T
Q  511 ttgaaaccaccatgtaatcatctc 534  Q
    ||||||||||||||||||||||||    
T  48883846 ttgaaaccaccatgtaatcatctc 48883823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 15349405 - 15349251
Alignment:
Q  18 catacttcaccaattcaacaccaacatttattccaataatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15349405 catacttcaccaattcaacaccaacatttattccaataatatcaccactctttgtacggcacaaagggtaaaagtacagagttggatcatcatcaatatt 15349306  T
Q  118 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccat 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349305 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccat 15349251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 12195601 - 12195541
Alignment:
Q  257 taatcatctgggagacggatctctaacaatttcttttccattaaatcaaaggcagcaataa 317  Q
    ||||||||||| ||| | ||||||||||||||| ||||||||||||||||| || ||||||    
T  12195601 taatcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaataa 12195541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 12440029 - 12439969
Alignment:
Q  257 taatcatctgggagacggatctctaacaatttcttttccattaaatcaaaggcagcaataa 317  Q
    ||||||||||| ||| | ||||||||||||||| ||||||||||||||||| || ||||||    
T  12440029 taatcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaataa 12439969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 12200618 - 12200559
Alignment:
Q  258 aatcatctgggagacggatctctaacaatttcttttccattaaatcaaaggcagcaataa 317  Q
    |||||||||| ||| | ||||||| ||||||| |||||||||||||||||||| ||||||    
T  12200618 aatcatctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaataa 12200559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 12445046 - 12444987
Alignment:
Q  258 aatcatctgggagacggatctctaacaatttcttttccattaaatcaaaggcagcaataa 317  Q
    |||||||||| ||| | ||||||| ||||||| |||||||||||||||||||| ||||||    
T  12445046 aatcatctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaataa 12444987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 4030327 - 4030375
Alignment:
Q  18 catacttcaccaattcaacaccaacatttattccaataatatcaccact 66  Q
    |||||||||||||||||  |||| ||| | |||||||||||||||||||    
T  4030327 catacttcaccaattcagtaccaccatatgttccaataatatcaccact 4030375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 307
Target Start/End: Original strand, 4962325 - 4962357
Alignment:
Q  275 atctctaacaatttcttttccattaaatcaaag 307  Q
    ||||||||||||||| |||||||||||||||||    
T  4962325 atctctaacaatttcctttccattaaatcaaag 4962357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 48899262 - 48899092
Alignment:
Q  18 catacttcaccaattcaacaccaacatttattccaataatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatatt 117  Q
    |||||||||||||| |||   || ||| | ||||||||||||  ||||| ||||||| |||||| ||||||||||||| ||| ||| |  ||||||||      
T  48899262 catacttcaccaatccaaattcaccatctgttccaataatatagccactttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaatagg 48899163  T
Q  118 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccattattcaactttatcat 188  Q
    |||||||||| ||  ||||||||| || || ||||| ||||||||||||||||||  ||||||| ||||||    
T  48899162 aagaacaagagtcactgtccaagaggattttactttatattctttcatcacccatatttcaactgtatcat 48899092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 48871082 - 48870929
Alignment:
Q  18 catacttcaccaattcaacaccaacatttattccaataatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatatt 117  Q
    |||||||||||||| ||| ||||  || |  |||||||||||||||||| ||||||| |||||| ||| ||||| ||  |   | | | ||||||| |      
T  48871082 catacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacaga 48870983  T
Q  118 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcaccca 171  Q
    |||||||||| ||||||||||||| ||||||||||||||||| |||||||||||    
T  48870982 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48870929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 48876386 - 48876233
Alignment:
Q  18 catacttcaccaattcaacaccaacatttattccaataatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatatt 117  Q
    |||||||||||||| ||| ||||  || |  |||||||||||||||||| ||||||| |||||| ||| ||||| ||  |   | | | ||||||| |      
T  48876386 catacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacaga 48876287  T
Q  118 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcaccca 171  Q
    |||||||||| ||||||||||||| ||||||||||||||||| |||||||||||    
T  48876286 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48876233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 48886768 - 48886615
Alignment:
Q  18 catacttcaccaattcaacaccaacatttattccaataatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatatt 117  Q
    |||||||||||||| ||| ||||  || |  |||||||||||||||||| ||||||| |||||| ||| ||||| ||  |   | | | ||||||| |      
T  48886768 catacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcagaaatgtcatcaacaga 48886669  T
Q  118 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcaccca 171  Q
    |||||||||| ||||||||||||| ||||||||||||||||| |||||||||||    
T  48886668 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48886615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 328 - 476
Target Start/End: Complemental strand, 48852890 - 48852743
Alignment:
Q  328 taaatcataacgaaaaaaccaaccaatgaatagccccgttaaagagaaaccctattctgtcatcatcagaggcagccataaacgggaagtgagcatcctc 427  Q
    |||||||| |||||||  ||||||||||||||||||| ||||| ||  |||||| ||||  |||||| ||||||  |||  | |||||||||| | ||||    
T  48852890 taaatcatgacgaaaag-ccaaccaatgaatagccccattaaaaagcgaccctactctgggatcatcggaggcattcatgtaagggaagtgagtaccctc 48852792  T
Q  428 aatttctttccacatattatctctcaatgagaaacactccaaatgtgat 476  Q
    ||||||||||||   |||| |||||||||||||| |||| |||||||||    
T  48852791 aatttctttccatgcattagctctcaatgagaaaaactctaaatgtgat 48852743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 48864527 - 48864403
Alignment:
Q  48 ttccaataatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagtt 147  Q
    ||||||||||||| ||||| ||||||  ||| |||||   ||||||| |||| | | ||  |||||||  ||||||||||||||| |||||||| || |     
T  48864527 ttccaataatatcgccactttttgtagagcataaaggaagaaagtaccgagtggaaataaaatcaataggaagaacaagaatcttagtccaagacgaatg 48864428  T
Q  148 cactttgtattctttcatcacccat 172  Q
    |||||||||||||||||||||||||    
T  48864427 cactttgtattctttcatcacccat 48864403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 424 - 470
Target Start/End: Complemental strand, 48891541 - 48891495
Alignment:
Q  424 cctcaatttctttccacatattatctctcaatgagaaacactccaaa 470  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  48891541 cctcaatttctttccacatattatctctcaatgagaaaaactccaaa 48891495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 476
Target Start/End: Original strand, 49048512 - 49048577
Alignment:
Q  411 gggaagtgagcatcctcaatttctttccacatattatctctcaatgagaaacactccaaatgtgat 476  Q
    |||| ||||| | |||||||||||||||| |||||||||||||| |||||| ||||||||||||||    
T  49048512 gggatgtgagtaccctcaatttctttccatatattatctctcaacgagaaaaactccaaatgtgat 49048577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 48 - 188
Target Start/End: Original strand, 45365789 - 45365929
Alignment:
Q  48 ttccaataatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagtt 147  Q
    |||||||||||||||| || ||||||  ||| |||||| |||||||  |||| ||| |  ||||||||  ||||||  || ||||||||||||| ||       
T  45365789 ttccaataatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacg 45365888  T
Q  148 cactttgtattctttcatcacccattattcaactttatcat 188  Q
    |||||| ||||||||||||||||||  ||||||| ||||||    
T  45365889 cactttatattctttcatcacccatatttcaactgtatcat 45365929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 48 - 186
Target Start/End: Original strand, 45371643 - 45371781
Alignment:
Q  48 ttccaataatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagtt 147  Q
    ||||||| |||||||| || |||||||  ||||| ||| |||||||| ||||||||    |||| |||  |||||||| | |||| |||||||| || |     
T  45371643 ttccaattatatcaccgctttttgtacaacacaatggggaaaagtaccgagttggaacgccatcgataggaagaacaaaagtcttagtccaagacgaatg 45371742  T
Q  148 cactttgtattctttcatcacccattattcaactttatc 186  Q
    |||||||||||||||||| ||||||  ||||||| ||||    
T  45371743 cactttgtattctttcataacccatatttcaactgtatc 45371781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 425 - 479
Target Start/End: Complemental strand, 48898838 - 48898784
Alignment:
Q  425 ctcaatttctttccacatattatctctcaatgagaaacactccaaatgtgataaa 479  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||| |||||||||    
T  48898838 ctcaatttccttccacacattatctctcaatgagaaaaactccaagtgtgataaa 48898784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 475
Target Start/End: Original strand, 45372008 - 45372072
Alignment:
Q  411 gggaagtgagcatcctcaatttctttccacatattatctctcaatgagaaacactccaaatgtga 475  Q
    |||||||||| | |||||| |||| ||||  |||||||||||||||||||| |||||||||||||    
T  45372008 gggaagtgagtaccctcaagttctctccaagtattatctctcaatgagaaaaactccaaatgtga 45372072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 476
Target Start/End: Original strand, 7237695 - 7237745
Alignment:
Q  426 tcaatttctttccacatattatctctcaatgagaaacactccaaatgtgat 476  Q
    |||||||||||||||||||||||||| || ||||||  |||||||||||||    
T  7237695 tcaatttctttccacatattatctctaaaagagaaaacctccaaatgtgat 7237745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 7771507 - 7771457
Alignment:
Q  426 tcaatttctttccacatattatctctcaatgagaaacactccaaatgtgat 476  Q
    ||||||||||||||| |||||||||| |||||||||  |||||||||||||    
T  7771507 tcaatttctttccacgtattatctctaaatgagaaaacctccaaatgtgat 7771457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 7790192 - 7790142
Alignment:
Q  426 tcaatttctttccacatattatctctcaatgagaaacactccaaatgtgat 476  Q
    ||||||||||||||| |||||||||| |||||||||  |||||||||||||    
T  7790192 tcaatttctttccacgtattatctctaaatgagaaaacctccaaatgtgat 7790142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 473
Target Start/End: Original strand, 49044126 - 49044188
Alignment:
Q  411 gggaagtgagcatcctcaatttctttccacatattatctctcaatgagaaacactccaaatgt 473  Q
    ||||||| || | |||||||||| |||||  |||||||||||||||||||| |||||||||||    
T  49044126 gggaagttagtaacctcaatttcattccatctattatctctcaatgagaaaaactccaaatgt 49044188  T

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Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 383
Target Start/End: Complemental strand, 50669338 - 50669234
Alignment:
Q  278 tctaacaatttcttttccattaaatcaaaggcagcaataatatcaacacttaaatcataacgaaaaaaccaaccaatgaatagccccgttaaagagaaac 377  Q
    ||||||| |||| ||||||| |||||||||||| |||| | |   ||  ||||||||||||| |||| ||||||||| ||||||| | |||||||||| |    
T  50669338 tctaacagtttcctttccatcaaatcaaaggcaacaatgacaaacacctttaaatcataacg-aaaagccaaccaataaatagcctcattaaagagaacc 50669240  T
Q  378 cctatt 383  Q
    ||||||    
T  50669239 cctatt 50669234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 7790512 - 7790448
Alignment:
Q  108 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccat 172  Q
    ||||||||  |||||||||| | || |||||||| || | |||||||||||||||||||||||||    
T  7790512 catcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccat 7790448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 45384459 - 45384594
Alignment:
Q  48 ttccaataatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattat--catcaatattaagaacaagaatctttgtccaagaagag 145  Q
    |||||||||||||||| || ||||||  ||| |||||| ||| | | ||||  ||| |||  |||||| |  ||||||| || ||||||||||||| ||     
T  45384459 ttccaataatatcaccgctttttgtagagcataaaggggaaagggatagagaaggaatataccatcaaaaggaagaacacgagtctttgtccaagacgaa 45384558  T
Q  146 ttcactttgtattctttcatcacccattattcaact 181  Q
    | |||||| ||||||||||||||||||  |||||||    
T  45384559 tgcactttatattctttcatcacccatatttcaact 45384594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 466
Target Start/End: Original strand, 48735334 - 48735394
Alignment:
Q  406 taaacgggaagtgagcatcctcaatttctttccacatattatctctcaatgagaaacactc 466  Q
    ||||||||| ||| |||| |||||||||||||||  ||||| |||||||||||||| ||||    
T  48735334 taaacgggaggtgggcatactcaatttctttccaggtattagctctcaatgagaaaaactc 48735394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 49043797 - 49043877
Alignment:
Q  108 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccattattcaactttatcat 188  Q
    ||||||||  || ||||||| |||| ||||| || || | |||||||||||||||||||||||||  ||||||| ||||||    
T  49043797 catcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatcat 49043877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 50250626 - 50250677
Alignment:
Q  328 taaatcataacgaaaaaaccaaccaatgaatagccccgttaaagagaaaccct 380  Q
    ||||||||||||||||  ||||||||||||||||||| |||||||||| ||||    
T  50250626 taaatcataacgaaaag-ccaaccaatgaatagccccattaaagagaacccct 50250677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 386
Target Start/End: Original strand, 7773630 - 7773740
Alignment:
Q  275 atctctaacaatttcttttccattaaatcaaaggcagcaataatatcaacacttaaatcataacgaaaaaaccaaccaatgaatagccccgttaaagaga 374  Q
    ||||| ||||||||| |||||||||||||||||| | |||| | ||    || |||||||  ||| |||  ||||||||||||||||||| ||||| |||    
T  7773630 atctcaaacaatttcctttccattaaatcaaaggaaacaattacattccaacgtaaatcacgacgcaaag-ccaaccaatgaatagccccattaaataga 7773728  T
Q  375 aaccctattctg 386  Q
    |||||| |||||    
T  7773729 aacccttttctg 7773740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 48853103 - 48853032
Alignment:
Q  118 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccattattcaactttatcatc 189  Q
    |||||||||| |||| |||||||| ||   |||||||||||||||||| ||||||  ||||||| |||||||    
T  48853103 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatc 48853032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 7878805 - 7878735
Alignment:
Q  118 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccattattcaactttatcat 188  Q
    |||||||||| | ||  ||||||| || | |||||||||||||||||||||||||  ||||||| ||||||    
T  7878805 aagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcat 7878735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 476
Target Start/End: Original strand, 50250735 - 50250785
Alignment:
Q  426 tcaatttctttccacatattatctctcaatgagaaacactccaaatgtgat 476  Q
    ||||||| |||||| ||||||| ||||||||| ||| ||||||||||||||    
T  50250735 tcaatttgtttccagatattatttctcaatgaaaaaaactccaaatgtgat 50250785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 50666749 - 50666667
Alignment:
Q  106 atcatcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccattattcaactttatcat 188  Q
    ||||||||| | || ||||||| | || |||||||| || | |||||||||||||| |||||||||| |||||| | ||||||    
T  50666749 atcatcaatgtgaataacaagagttttagtccaagatgaatgcactttgtattcttacatcacccataattcaattgtatcat 50666667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 7773481 - 7773534
Alignment:
Q  135 tccaagaagagttcactttgtattctttcatcacccattattcaactttatcat 188  Q
    ||||||| || | |||||||||||||||||||||||||  ||||||| ||||||    
T  7773481 tccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcat 7773534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 308
Target Start/End: Complemental strand, 7878002 - 7877969
Alignment:
Q  275 atctctaacaatttcttttccattaaatcaaagg 308  Q
    ||||| ||||||||||||||||||||||||||||    
T  7878002 atctcaaacaatttcttttccattaaatcaaagg 7877969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 476
Target Start/End: Original strand, 45384825 - 45384890
Alignment:
Q  411 gggaagtgagcatcctcaatttctttccacatattatctctcaatgagaaacactccaaatgtgat 476  Q
    |||||||||||| ||| ||||||||||||   |||| ||||||| |||||| ||||||| ||||||    
T  45384825 gggaagtgagcaccctgaatttctttccatgcattagctctcaacgagaaaaactccaagtgtgat 45384890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 48147358 - 48147415
Alignment:
Q  124 aagaatctttgtccaagaagagttcactttgtattctttcatcacccattattcaact 181  Q
    |||| |||| |||||||| || | |||||||||||||||||||||||||  |||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 48147415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 469
Target Start/End: Original strand, 48147663 - 48147708
Alignment:
Q  424 cctcaatttctttccacatattatctctcaatgagaaacactccaa 469  Q
    |||||| ||||||||||||| |||||||||| |||||| |||||||    
T  48147663 cctcaagttctttccacatactatctctcaacgagaaaaactccaa 48147708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 48156058 - 48156131
Alignment:
Q  108 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccattattcaact 181  Q
    ||||||||  ||| |||||| | || ||||||||||| | |||||||||||| ||||||||||||  |||||||    
T  48156058 catcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaact 48156131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 372
Target Start/End: Complemental strand, 48863493 - 48863413
Alignment:
Q  291 tttccattaaatcaaaggcagcaataatatcaacacttaaatcataacgaaaaaaccaaccaatgaatagccccgttaaaga 372  Q
    ||||| |||||  ||||||| |||||| || ||||| || ||||| |||||||  |||||||||||||||||||||| ||||    
T  48863493 tttccgttaaacgaaaggcaacaataacataaacacctatatcatgacgaaaag-ccaaccaatgaatagccccgttgaaga 48863413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 49038518 - 49038571
Alignment:
Q  119 agaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccat 172  Q
    ||||||||| |||| |||||||| || |  ||||||||||||||||||||||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccat 49038571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 48156364 - 48156412
Alignment:
Q  409 acgggaagtgagcatcctcaatttctttccacatattatctctcaatga 457  Q
    ||||| |||||||| |||||| |||||||||  ||||||||||||||||    
T  48156364 acggggagtgagcagcctcaagttctttccaagtattatctctcaatga 48156412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 188
Target Start/End: Original strand, 47451469 - 47451609
Alignment:
Q  48 ttccaataatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagtt 147  Q
    ||||||||||||||||||| ||||||  |   || |||||||||||| |||  ||| |  ||||||||  |||||||||| |||||  |||||| || ||    
T  47451469 ttccaataatatcaccactttttgtagaggttaaggggtaaaagtactgagagggaatgccatcaataggaagaacaagagtcttttcccaagacgaatt 47451568  T
Q  148 cactttgtattctttcatcacccattattcaactttatcat 188  Q
     ||||||||||||||||||||||||  ||||||| ||||||    
T  47451569 aactttgtattctttcatcacccatatttcaactatatcat 47451609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 11015030 - 11015085
Alignment:
Q  18 catacttcaccaattcaacaccaacatttattccaataatatcaccactatttgta 73  Q
    ||||||| ||||||||| ||||| ||||| ||||||||||| ||||||| ||||||    
T  11015030 catactttaccaattcaccaccaccatttgttccaataataccaccactttttgta 11015085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 42561972 - 42562026
Alignment:
Q  118 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccat 172  Q
    ||||||||||||||| |||||||| || | |||||||||||||||||||||||||    
T  42561972 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccat 42562026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 472
Target Start/End: Complemental strand, 179160 - 179112
Alignment:
Q  424 cctcaatttctttccacatattatctctcaatgagaaacactccaaatg 472  Q
    ||||||||||||||||  ||||||||||||||||||||  |||||||||    
T  179160 cctcaatttctttccatgtattatctctcaatgagaaaatctccaaatg 179112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 9120168 - 9120115
Alignment:
Q  135 tccaagaagagttcactttgtattctttcatcacccattattcaactttatcat 188  Q
    ||||||| || | |||||||||||||||||||||||||  ||||||| ||||||    
T  9120168 tccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcat 9120115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 179450 - 179410
Alignment:
Q  148 cactttgtattctttcatcacccattattcaactttatcat 188  Q
    |||||||||||||||||||||||||  ||||||| ||||||    
T  179450 cactttgtattctttcatcacccatatttcaactgtatcat 179410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 411 - 476
Target Start/End: Complemental strand, 21015951 - 21015886
Alignment:
Q  411 gggaagtgagcatcctcaatttctttccacatattatctctcaatgagaaacactccaaatgtgat 476  Q
    |||||| ||| | ||||||||||||||||| ||||||||||||| |||||| |||| || ||||||    
T  21015951 gggaagggagtaccctcaatttctttccacctattatctctcaacgagaaaaactctaactgtgat 21015886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 479
Target Start/End: Original strand, 21979571 - 21979639
Alignment:
Q  411 gggaagtgagcatcctcaatttctttccacatattatctctcaatgagaaacactccaaatgtgataaa 479  Q
    ||||| |||||| ||||||||| ||||||  ||||||||||||| ||||||  ||||||||||| ||||    
T  21979571 gggaaatgagcaccctcaatttgtttccaggtattatctctcaaagagaaaacctccaaatgtggtaaa 21979639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 24310621 - 24310570
Alignment:
Q  135 tccaagaagagttcactttgtattctttcatcacccattattcaactttatc 186  Q
    |||||||||| | |||||||||||||||||||||||||   |||||||||||    
T  24310621 tccaagaagactgcactttgtattctttcatcacccatatatcaactttatc 24310570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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