View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13484_low_3 (Length: 490)

Name: NF13484_low_3
Description: NF13484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13484_low_3
NF13484_low_3
[»] chr3 (3 HSPs)
chr3 (21-477)||(35497564-35498023)
chr3 (127-273)||(29246653-29246811)
chr3 (300-360)||(29246877-29246937)
[»] chr7 (2 HSPs)
chr7 (127-360)||(11210997-11211233)
chr7 (122-233)||(46254001-46254113)
[»] chr6 (1 HSPs)
chr6 (128-167)||(2780810-2780849)
[»] chr1 (2 HSPs)
chr1 (300-360)||(36658352-36658412)
chr1 (135-167)||(36658212-36658244)
[»] chr5 (2 HSPs)
chr5 (300-360)||(32520092-32520152)
chr5 (139-180)||(32521615-32521656)
[»] chr2 (2 HSPs)
chr2 (195-233)||(29717312-29717350)
chr2 (303-360)||(35976011-35976068)
[»] chr4 (1 HSPs)
chr4 (385-426)||(19444434-19444475)


Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 21 - 477
Target Start/End: Original strand, 35497564 - 35498023
Alignment:
Q  21 ccgagttcatactttgtaggcagcaattttactctgtctccataccctgtgtgcatttaagtgacatacctgtgcctattccatgtactttagtacca-- 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  35497564 ccgagttcatactttgtaggcagcaattttactctgtctccataccctgtgtgcatttaagtgacatacctgtgcctattccatgtactttagtaccaaa 35497663  T
Q  119 gtgacaacaaaa-aatataacaattaacaaataatttagagatgattcaatagtttgtatttagaacaatatgtattcatagttgactaacgataaaaac 217  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35497664 gtgacaacaaaaaaatataacaattaacaaataatttagagatgattcaatagtttgtatttagaacaatatatattcatagttgactaacgataaaaac 35497763  T
Q  218 acgacaacaacaaaaatggatgcaaagaagaagagatgtccatcggtaacttatgaaaaggaagtagcaataatgattgttcaggtttaaataatagtaa 317  Q
    |||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35497764 acgacaacaataaaaatagatgcaaagaagaagagatgtcgatcggtaacttatgaaaaggaagtagcaattatgattgttcaggtttaaataatagtaa 35497863  T
Q  318 agaagtttatatttaatcaactttaatggtatataaatttaaaatcatataagattggctgtaccgacactcatatccattcaaatatatgggtaattat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  35497864 agaagtttatatttaatcaactttaatggtatataaatttaaaatcatataagattggccgtaccgacactcatacccattcaaatatatgggtaattat 35497963  T
Q  418 ccgtgcccaaactcagaatcataaatgcatgtgtttatcctgctcatcattgtgaatatt 477  Q
    ||| ||||||||||  | ||||||||||||||||||||||||| |||||| |||||||||    
T  35497964 ccgagcccaaactcgaactcataaatgcatgtgtttatcctgcccatcatcgtgaatatt 35498023  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 273
Target Start/End: Original strand, 29246653 - 29246811
Alignment:
Q  127 aaaaaatataacaattaacaaataatttagagatgattcaatagtttgtatttag-aacaatatgtatt-------catagttgactaacgataaaaaca 218  Q
    ||||||| |||||  |||||||||||||||||||||||||| | || |||||| | ||| ||||||||        ||||||||||||||||||||||||    
T  29246653 aaaaaatgtaacatataacaaataatttagagatgattcaacaattcgtattttggaaccatatgtatgatgtatccatagttgactaacgataaaaaca 29246752  T
Q  219 cgacaacaaca-aaaatggatgc---aaagaagaagagatgtccatcggtaacttatga 273  Q
     |||||||||| |||||||||||   |||||| |||||||||| ||| ||| |||||||    
T  29246753 agacaacaacagaaaatggatgcacaaaagaacaagagatgtcgatcagtagcttatga 29246811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 29246877 - 29246937
Alignment:
Q  300 aggtttaaataatagtaaagaagtttatatttaatcaactttaatggtatataaatttaaa 360  Q
    ||||||||||||| ||||| |||||||   ||||| |||||||||| |||||| |||||||    
T  29246877 aggtttaaataattgtaaaaaagtttacgattaattaactttaatgatatatacatttaaa 29246937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 127 - 360
Target Start/End: Complemental strand, 11211233 - 11210997
Alignment:
Q  127 aaaaaatataacaattaacaaataatttagagatgattcaatagtttgtatttagaacaatatgtattcatagttgactaacgataaaaacacgacaaca 226  Q
    ||||||| ||||||||||||||||||||||||||||||||| | ||| |||||  ||| | |  ||| |||||||||||||||||||||| |  ||||||    
T  11211233 aaaaaatgtaacaattaacaaataatttagagatgattcaacaatttctatttgaaaccaca--tatccatagttgactaacgataaaaataaaacaaca 11211136  T
Q  227 acaaaaatggatgcaaagaagaagagatgtccatcggtaa-cttatgaaaaggaagtagcaataatgattgttcagg------tttaaataatagtaaag 319  Q
       |||||||||||| | ||||||||||||| |||||||| | || || || |||| | ||| || ||||||| |||      ||||||||||| ||||     
T  11211135 --gaaaatggatgcacaaaagaagagatgtcgatcggtaagcataagagaaagaagcaacaacaacgattgtttaggtttagatttaaataataataaaa 11211038  T
Q  320 aagtttatatttaatcaactttaatggtatataaatttaaa 360  Q
    | ||||| | ||||||| |||||||||||||||||||||||    
T  11211037 atgtttacaattaatcatctttaatggtatataaatttaaa 11210997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 46254113 - 46254001
Alignment:
Q  122 acaacaaaaaata-taacaattaacaaataatttagagatgattcaatagtttgtatttagaacaatatgtattcatagttgactaacgataaaaacacg 220  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||| | |||||||||  ||| |||||| | ||||||||||||| |||||||| | |    
T  46254113 acaacaaaaaaaagtaacaattaacaaataatttagagatgattcaacaatttgtatttgaaaccatatgtctccatagttgactaatgataaaaataag 46254014  T
Q  221 acaacaacaaaaa 233  Q
    |||| ||||||||    
T  46254013 acaagaacaaaaa 46254001  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 2780810 - 2780849
Alignment:
Q  128 aaaaatataacaattaacaaataatttagagatgattcaa 167  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2780810 aaaaatataacaattaacaaataatttagagatgattcaa 2780849  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 36658352 - 36658412
Alignment:
Q  300 aggtttaaataatagtaaagaagtttatatttaatcaactttaatggtatataaatttaaa 360  Q
    ||||||||||||||||||| | ||||| | |||||||||||||||| ||||||||| ||||    
T  36658352 aggtttaaataatagtaaaaatgtttacacttaatcaactttaatgatatataaatataaa 36658412  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 36658212 - 36658244
Alignment:
Q  135 taacaattaacaaataatttagagatgattcaa 167  Q
    ||||||||||||||||||||| |||||||||||    
T  36658212 taacaattaacaaataatttaaagatgattcaa 36658244  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 32520152 - 32520092
Alignment:
Q  300 aggtttaaataatagtaaagaagtttatatttaatcaactttaatggtatataaatttaaa 360  Q
    |||||||||||||  |||| ||||||| | |||||||||||||||||||| || |||||||    
T  32520152 aggtttaaataattataaaaaagtttacaattaatcaactttaatggtatgtagatttaaa 32520092  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 32521656 - 32521615
Alignment:
Q  139 aattaacaaataatttagagatgattcaatagtttgtattta 180  Q
    ||||||||||||||||||||||||||||| | ||| ||||||    
T  32521656 aattaacaaataatttagagatgattcaacaatttttattta 32521615  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 29717350 - 29717312
Alignment:
Q  195 catagttgactaacgataaaaacacgacaacaacaaaaa 233  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  29717350 catagttgactaacgataaaaacaagacaacaagaaaaa 29717312  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 360
Target Start/End: Complemental strand, 35976068 - 35976011
Alignment:
Q  303 tttaaataatagtaaagaagtttatatttaatcaactttaatggtatataaatttaaa 360  Q
    |||||||| | ||||| ||||||| | |||||  ||||||||||||||||||||||||    
T  35976068 tttaaatatttgtaaaaaagtttacaattaattgactttaatggtatataaatttaaa 35976011  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 426
Target Start/End: Complemental strand, 19444475 - 19444434
Alignment:
Q  385 cactcatatccattcaaatatatgggtaattatccgtgccca 426  Q
    |||||||| |||||||||| | ||||||||||||||||||||    
T  19444475 cactcatacccattcaaatttgtgggtaattatccgtgccca 19444434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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