View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13484_low_4 (Length: 451)
Name: NF13484_low_4
Description: NF13484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13484_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 33498175 - 33497730
Alignment:
| Q |
1 |
cgacctctgagtcaaggttcaaccaccataaacagctcaaattgagacaaaccataatcaaaccaccaaaataattgaaccgctgcaaaggccaatttgt |
100 |
Q |
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| T |
33498175 |
cgacctctgagtcaaggttcaaccaccataaccagctcaaattgagacaaaccataatcaaaccaccaaaataattgaaccgctgcaaaggccaatttgt |
33498076 |
T |
|
| Q |
101 |
ggttgagccgttcggtttgatttttaaagcactaaaatgatgcataatatctcacatttcagcgtgtatcgtgactaacttgttctctccacttatctga |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33498075 |
ggctgagccgttcggtttgatttttaaagcactaaaatgatgcataatatctcacatttcagcgcgtatcgtgactaacttgttctctccacttatctga |
33497976 |
T |
|
| Q |
201 |
tgtgtgcaggtttttgtagataatcatgatttccataaagagcttgagtaattttatatggttcaccgcgactgtcttgtgaagaaattctttgtagaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33497975 |
tgtgtgcaggtttttgtagataatcatgatttccataaagagcttgagtaattttatatggttcaccgcgactgtcttgtgaagaaattctttgtagaag |
33497876 |
T |
|
| Q |
301 |
ctgtttgcgtcggggaatgttcatactcacatccaattttttgtagatgatagaataataatggctacaccagttgacccttgtttatacatttgaattg |
400 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33497875 |
ctgtttgcgtcagggaatgttcatactcacatccaattttttgtagatgatagaataataatggctacaccagttgacccttgtttatacatttgaatgg |
33497776 |
T |
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| Q |
401 |
acataagttttgccctcatccttgcaccatttccttcaattttctt |
446 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33497775 |
acataagttttgccctcatccttgcaccatttcctttcattttctt |
33497730 |
T |
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