View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13484_low_5 (Length: 375)
Name: NF13484_low_5
Description: NF13484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13484_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 155 - 337
Target Start/End: Complemental strand, 34870335 - 34870157
Alignment:
| Q |
155 |
tagatcatacaattattgtagttttgttttatctatttagcttaactcgtttgaatttgaatgttactacataagttattgagttagttgttgataaata |
254 |
Q |
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| T |
34870335 |
tagatcatgcaattattgtagttttgttttatctatttagcttaactcgtttgaatttgaatgttaatacataagttattgagtt----gttgataaata |
34870240 |
T |
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| Q |
255 |
gactaataatagaaagttaaaaaattgtacctttgtccagttggcctcactatgtcaagataacataacatatacactcttct |
337 |
Q |
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| T |
34870239 |
gactaataatagaaagtttaaaaattgtacctttgtccagttggcctcactatgtcaagataacataacatatacactcttct |
34870157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 34870547 - 34870385
Alignment:
| Q |
7 |
agagagcgggaggagagttcacgttttggatttttagggagagaataaacccactaaaatggagaaaatgctgataaataactaaatatataatccaaaa |
106 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34870547 |
agagagagggaggagagttcacgttttggatttttagagagagaataaacccactaaaatggagaaaatgctgataaataactaaatatataatccaaaa |
34870448 |
T |
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| Q |
107 |
a-------gagtcaacaatttaaatccactaattacgaaatgatgaaaatgcccctagatcat |
162 |
Q |
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| T |
34870447 |
acaatgaggtgttaacaatttaaacccactaattacgaaatgatgaaaatgcccctaaatcat |
34870385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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