View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13484_low_9 (Length: 307)
Name: NF13484_low_9
Description: NF13484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13484_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 49684986 - 49684698
Alignment:
| Q |
18 |
tgaacaatatatttaaccgaaaatgaaccgccaaataaccaacaagtactagcaattcaacagcttgaacttgttcagtaatgcgttgtttttcttttct |
117 |
Q |
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| T |
49684986 |
tgaacaatatatttaaccgaaaaagaaccgccaaataatcaacaagtactagcaattcaacggcttgaacttgttcagtaatgcattgtttttcttttct |
49684887 |
T |
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| Q |
118 |
tattaagaaagtgcaaaactatgtatatcgtttttcatcttttaaaactaattccagtagtttcagtttctgatcaaattaagttaaagccaaaacccta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49684886 |
tattaagaaagtgcaaaactatgtatatcgtttttcatcttttaaaactaattccagtagtttcagtttctgatcaaattaagttaaagccaaaacccta |
49684787 |
T |
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| Q |
218 |
aagctattatcatcaccaacagcaccactgctgaacatagagctaccctttacctc---ttctcctctagggacgactttcctttgcta |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49684786 |
aagctattatcatcaccaacagcaccactgctgaacatagagctaccctttacctcttcttctcctctagggacgactttcctttgcta |
49684698 |
T |
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