View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13485_low_2 (Length: 632)
Name: NF13485_low_2
Description: NF13485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13485_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 22 - 616
Target Start/End: Original strand, 7905194 - 7905783
Alignment:
| Q |
22 |
tcactgaacacagaaagtactgcactccaagtcaccttctcatagcttctagcataatgctgaaacatgccaacatgtcggcgaagccagaaatctccaa |
121 |
Q |
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| T |
7905194 |
tcactgaacacagaaagtactgcactccaagtcaccttctcatagcttctagcataatgctgaaacatgccaacatgtcggcgaagccagaaatctccaa |
7905293 |
T |
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| Q |
122 |
agaaattgcataggtttttagaacacttaaccttt-gaaccatgtaatgaatgttattcatcatgaaaatatgttgcaaagcaacatcagtgtataactt |
220 |
Q |
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| T |
7905294 |
agaaattgcataggtttttagaacacttaaccttttgaaccatgtaatgaatgttattcatcatgaaaatatgttgcaaagcaacatcagtgtataactt |
7905393 |
T |
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| Q |
221 |
tgatttgttgcataagttggattctagagtggtagtgatttgccttaagttacaagcaattggacaacatgagagagtagagttttcatggttgttgtca |
320 |
Q |
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| T |
7905394 |
tgatttgttgcataagttggattctagagtggcagtgatttgccttaagttacaagcaattggacaacatgagagagtagaattttca---ccgttgtca |
7905490 |
T |
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| Q |
321 |
tcattgctatctgccggatcagtcgaaatttcatcgacaagaagaagattaaggctatcaccatattcaacaagtgccttgatgtaattcatgacatatc |
420 |
Q |
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| T |
7905491 |
tca---ctagccgcaagatcggtcgaagtttcatcctcaataagaagattaaggctatcaccatattcaacaagtgccttgatgtaattcatgacatatc |
7905587 |
T |
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| Q |
421 |
ttgtaagatgatgaacacctccaccaggaaaacatttatttgatggatttgttgcaatagcatttctaaatgcaagaaatgtagattttatagtatcacc |
520 |
Q |
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| T |
7905588 |
ttgtaagatgatgaacacctccaccaggaaaacatttatttgatggatttgttgcaatagcatttctaaatgcaagaaatgtagattttatagtatcacc |
7905687 |
T |
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| Q |
521 |
aaagcttcttagaagtttgtgaaattcttctctaacaaaagaatcaacttcttctatgaacaaaatatctatatccactgctagaagttccaaaac |
616 |
Q |
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| T |
7905688 |
aaagcttcttagaagtttgtgaaattctcctctgacaaaagaatcaacttcttcaatgaacagaatatctatatccactgctagaagttccaaaac |
7905783 |
T |
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