View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13485_low_3 (Length: 466)
Name: NF13485_low_3
Description: NF13485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13485_low_3 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold1779 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 18342988 - 18342551
Alignment:
| Q |
13 |
gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18342988 |
gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga |
18342889 |
T |
|
| Q |
113 |
agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18342888 |
agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaa |
18342789 |
T |
|
| Q |
213 |
gaaggaaatccaaaaggaactcgaattttttccgcaatagcccgagaattgagacagttaaatttcactaaaatagtttcattagcacccgaggtattat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18342788 |
gaaggaaatccaaaaggaactcgaattttttccgcaatagcccgagaattgagacagttaaatttcactaaaatagtttcattagcacccgaggtattat |
18342689 |
T |
|
| Q |
313 |
aatacgagatcgtgatatagatatattatttaggactggaatgaataggaaggaaatctatttgaatatatatttgaatagaagtgaaatagagtcctaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18342688 |
aatacgagatcgtgatatagatatattatttaggactggaatgaataggaaggaaatctatttgaatatatatttgaatagaagtgaaatagagtcctaa |
18342589 |
T |
|
| Q |
413 |
atatattagatctcacatatatactttatatacttgtg |
450 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18342588 |
atatattagatctcacatatataccttatatacttgtg |
18342551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 78 - 335
Target Start/End: Complemental strand, 48288862 - 48288606
Alignment:
| Q |
78 |
aaagcagtaccaaattcatctttagaaagatctgaagtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataa |
177 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||| ||| | |||| ||| ||||||||||||||||||| || ||| ||||||||||| |
|
|
| T |
48288862 |
aaaggagtatcaaattcatctttagaaagatctgaagtgattaggagtc-aattatac----ttgtaaagaactaaaacgtggtgatgatataataataa |
48288768 |
T |
|
| Q |
178 |
agtatgatgataatgcggcggttctcattgataaagaaggaaatccaaaaggaactcga----attttttccgcaatagcccgagaattgagacagttaa |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||| ||| |
|
|
| T |
48288767 |
agtatgatgataatgcggcggttctcattgataaagaaggaaattcaaaaggaactcgatttttttttttttgcaatagcccgagaattgagacaggtaa |
48288668 |
T |
|
| Q |
274 |
atttcactaaaatagtttcattagcacccgaggtattataatacgagatcgtgatatagata |
335 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||||||||||| |||||||||||| |
|
|
| T |
48288667 |
atttcacttaaatagtttcattaacatccgaggtattataatacgagatggtgatatagata |
48288606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 36840761 - 36840497
Alignment:
| Q |
13 |
gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36840761 |
gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga |
36840662 |
T |
|
| Q |
113 |
agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36840661 |
agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaa |
36840562 |
T |
|
| Q |
213 |
gaaggaaatccaaaaggaactcgaattttttccgcaatagcccgagaattgagacagttaaattt |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36840561 |
gaaggaaatccaaaaggaactcgaattttttccgcaatagcccgagaattgagacagttaaattt |
36840497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 164376 - 164630
Alignment:
| Q |
13 |
gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
164376 |
gaatcataggagctagtaatcaacggtatgcttatattggtgacattgttgttgatgtaatcaaaaaagcagtatcaaattcatctttagaaatatctga |
164475 |
T |
|
| Q |
113 |
agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaa |
212 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
164476 |
agtgatcagggttgtaactgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggtggttctcattgataat |
164575 |
T |
|
| Q |
213 |
gaaggaaatccaaaaggaactcgaattttttccgcaatagcccgagaattgagac |
267 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
164576 |
gaaggaaatccaaaaggaactagaattttttccgcaatagcccgagaattgagac |
164630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 314
Target Start/End: Complemental strand, 277629 - 277415
Alignment:
| Q |
100 |
tagaaagatctgaagtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggt |
199 |
Q |
| |
|
|||||||||| ||||| || | ||||||||||||||||| ||||||||| | ||| | | ||||||||||| |||||||| ||||| ||||| |
|
|
| T |
277629 |
tagaaagatccgaagtaattcgagctgtaattgtacgtacatgtaaagaattcaaatgcgaagacggtataataatccgctatgatgacaatgctgcggt |
277530 |
T |
|
| Q |
200 |
tctcattgataaagaaggaaatccaaaaggaactcgaattttttccgcaatagcccgagaattgagacagttaaatttcactaaaatagtttcattagca |
299 |
Q |
| |
|
| | |||||| || |||| || ||||||||||||||| ||||| ||| || ||| ||||||||| | || ||||| || ||||||||||||||||| |
|
|
| T |
277529 |
tataattgatcaaaaaggcaacccaaaaggaactcgagtttttggcgcgattgccgaggaattgagagaattgaattttaccaaaatagtttcattagct |
277430 |
T |
|
| Q |
300 |
cccgaggtattataa |
314 |
Q |
| |
|
|| || ||||||||| |
|
|
| T |
277429 |
cctgaagtattataa |
277415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 14249350 - 14249096
Alignment:
| Q |
13 |
gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
14249350 |
gaatcataggagctagtaatcaacggtatgcttatattggtgacattgttgttgatgtaatcaaaaaagcagtatcaaattcatctttagaaatatctga |
14249251 |
T |
|
| Q |
113 |
agtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaa |
212 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14249250 |
agtgatcagggttgtaactgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggtggttctcattgataat |
14249151 |
T |
|
| Q |
213 |
gaaggaaatccaaaaggaactcgaattttttccgcaatagcccgagaattgagac |
267 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14249150 |
gaaggaaatccaaaaggaactagaattttttccgcaatagcccgagaattgagac |
14249096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 158; Significance: 7e-84; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 732 - 1037
Alignment:
| Q |
16 |
tcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagt |
115 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||||| || |||||||||| ||||| |||||||||||||| || || |||||||||| ||||| |
|
|
| T |
732 |
tcataggagctagtaatcgccgatatgctcatattggtgacgttattgttgctgtgatcaaggaagcagtaccaaatacacctctagaaagatcagaagt |
831 |
T |
|
| Q |
116 |
gatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaa |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||| || || || |||||| |||||||| ||||| || ||| |||||||| ||||| |
|
|
| T |
832 |
gatcagagctgtaattgtacgtacttgtaaagaactcaaacgcgacaacgggatgataatacgatatgatgacaatgctgccgttgtcattgatcaagaa |
931 |
T |
|
| Q |
216 |
ggaaatccaaaaggaactcgaattttttccgcaatagcccgagaattgagacagttaaatttcactaaaatagtttcattagcacccgaggtattataat |
315 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
932 |
ggaaatccaaaaggaactcgaatttttggtgcgatcgcccgggaattgagacagttaaatttcactaaaatagtttcattagctcccgaggtattataag |
1031 |
T |
|
| Q |
316 |
acgaga |
321 |
Q |
| |
|
|||||| |
|
|
| T |
1032 |
acgaga |
1037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 46699238 - 46699127
Alignment:
| Q |
13 |
gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46699238 |
gaatcataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaataaaaaaagcagtaccaaattcatctttagaaagatctga |
46699139 |
T |
|
| Q |
113 |
agtgatcagggc |
124 |
Q |
| |
|
|||||||||||| |
|
|
| T |
46699138 |
agtgatcagggc |
46699127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University