View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13485_low_4 (Length: 362)
Name: NF13485_low_4
Description: NF13485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13485_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 351
Target Start/End: Original strand, 9070779 - 9071107
Alignment:
| Q |
20 |
aagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttcctaactgaagagcagttgaagaagaacattttgatatccgg |
119 |
Q |
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| T |
9070779 |
aagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgttgtttcctaactgaaaagcagttgaagaagaagattttgatatccag |
9070878 |
T |
|
| Q |
120 |
ttcagaatcaaaccggtaaggttgaaatgatgaattgttgagtatcaaaaacttttttggaaggcaattgtctgggtctgatattgacatcgagtgtgat |
219 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9070879 |
ttcagaatcaaaccggtaaggtcgaaatgatgaattgttgagtatcaaaaacttttttggaaggcaattgtctgggtctgatattgacatcgagtgtgat |
9070978 |
T |
|
| Q |
220 |
tcgtagtcaatatcagagacatggaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactctt |
319 |
Q |
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| T |
9070979 |
tcgtagtcaatatcagagacatggaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactctt |
9071078 |
T |
|
| Q |
320 |
taggataaacacattgttgatcttgtgatgat |
351 |
Q |
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| T |
9071079 |
taggataaacaca---ttgatcttgtgatgat |
9071107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 317
Target Start/End: Original strand, 8862640 - 8862938
Alignment:
| Q |
22 |
gtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttcctaactgaagagcagttgaag-aagaacattttg--atatccg |
118 |
Q |
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| T |
8862640 |
gtgatcatatcttgcgactcttgggatgtttgatcatggtttctcaagtgttgtttcctaactgaagagcaattgaagaaagacaattttgtcgttcctg |
8862739 |
T |
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| Q |
119 |
gttcagaatcaaaccggtaaggttgaaatgatgaattgttgagtatcaaaaacttttttggaaggcaattgtctgggtctgatattgacatcgagtgtga |
218 |
Q |
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| T |
8862740 |
gttgtggaaaaaatcggtaaggtagaaatgatgagttgttaagtttcagaaactttttaggaatgcaattgtccgggtccatcactgaaattcggtttga |
8862839 |
T |
|
| Q |
219 |
ttcgtagtcaatatcagagacatggaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactc |
317 |
Q |
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| T |
8862840 |
ttcgtagtctatgtaatatacacggaatttgattggacctgaagtggtagagaggaccatcatggtttccttgttttcagtacaatataggcaaaactc |
8862938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 9087076 - 9087154
Alignment:
| Q |
20 |
aagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttcctaactgaagagcagttgaa |
98 |
Q |
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| T |
9087076 |
aagtgatcatatcttgtgaatctttgtttatctgatattggtttctcaaatgtcgtttcttaaccgaagagcagttgaa |
9087154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 351
Target Start/End: Original strand, 9087308 - 9087410
Alignment:
| Q |
243 |
gaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatct |
342 |
Q |
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| T |
9087308 |
gaatttgattggacctgaattggaagagagcacaatcatggttctcttatttttagtacaatataagcaaaactc---aggataaacaca---ttgatct |
9087401 |
T |
|
| Q |
343 |
tgtgatgat |
351 |
Q |
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||||||||| |
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| T |
9087402 |
tgtgatgat |
9087410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 334
Target Start/End: Original strand, 8866509 - 8866818
Alignment:
| Q |
22 |
gtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttcctaactgaagagcagttgaagaa-gaacattttgatatccggt |
120 |
Q |
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|||||||||||||||||| ||| |||| |||| || |||||||| |||||||||| ||| |||||| || |||||||| || |||||| ||| | | |
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| T |
8866509 |
gtgatcatatcttgtgaccgttgagatgattgatcttcgtttctcaggtgtcgtttcttaaatgaagaacaattgaagaaagatgattttgttatt-gat |
8866607 |
T |
|
| Q |
121 |
tcagaatcaaaccggtaaggttgaaatgatgaattgttgagtatcaaaaacttttttggaaggcaattgtctgggtctgatattgacatcgagtgtgatt |
220 |
Q |
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| T |
8866608 |
tctgaataaaatcggtaaggtggaaatgaggtcttgttaagtttcagaattttttccgaaatgcaattgtctgggtccgaaattgaaagttggtttgatt |
8866707 |
T |
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| Q |
221 |
cgtagtcaatatcagagacatggaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactcttt |
320 |
Q |
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| T |
8866708 |
cgtagtctatgtaatctacaaagaatatgaatggacctgaagtggtagataacaccatcatggtgttcttgttttgagtacaatataggcaaaactc--- |
8866804 |
T |
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| Q |
321 |
aggataaacacatt |
334 |
Q |
| |
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|||||||||||||| |
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| T |
8866805 |
aggataaacacatt |
8866818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 9126224 - 9126305
Alignment:
| Q |
22 |
gtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttcctaactgaagagcagttgaagaaga |
103 |
Q |
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|||||||||||||||||| ||||| || |||| | |||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
9126224 |
gtgatcatatcttgtgacccttggaataattgatcgtagtttctcaggtgtcgtttcctaaccgaagagcagttgaagaaga |
9126305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 193
Target Start/End: Original strand, 9108990 - 9109116
Alignment:
| Q |
66 |
caagtgtcgtttcctaactgaagagcagttgaagaagaacattttgatatccggttcagaatcaaaccggtaaggttgaaatgatgaattgttgagtatc |
165 |
Q |
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|||||| |||||| ||||||||||||||||| ||||| | ||| | |||| | ||| |||| ||| | ||||||| |||||||||| ||||||| || |
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| T |
9108990 |
caagtgccgtttcttaactgaagagcagttggagaaggaaattattatatttgattctgaataaaatctgtaaggtcaaaatgatgaactgttgagcat- |
9109088 |
T |
|
| Q |
166 |
aaaaacttttttggaaggcaattgtctg |
193 |
Q |
| |
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|||||| ||||| ||||||||||||||| |
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| T |
9109089 |
aaaaacattttttgaaggcaattgtctg |
9109116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 8980058 - 8980134
Alignment:
| Q |
25 |
atcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttcctaactgaagagcagttgaagaa |
101 |
Q |
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||||||| |||| ||| |||| ||| ||||| ||||||||||| |||| |||||| ||| ||||||||||| ||||| |
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| T |
8980058 |
atcatattttgtaacttttggaatgactgatcttggtttctcaggtgttgtttcccaacagaagagcagttaaagaa |
8980134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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