View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13486_high_11 (Length: 235)
Name: NF13486_high_11
Description: NF13486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13486_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 35688063 - 35687963
Alignment:
| Q |
1 |
aaaaccactacaaaaatggaaaggttattgttcttgcgacccttcattgtccctgcttctgagttgaaaagaggtgtcttacgacgaaaagactgcatgg |
100 |
Q |
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| T |
35688063 |
aaaaccactacaaaaatggaaaggttattgttcttgcgacccttcattgtccctgcttctgagttgaaaagaggtgtcttacgacgaaaagactgcatgg |
35687964 |
T |
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| Q |
101 |
c |
101 |
Q |
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| T |
35687963 |
c |
35687963 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 35688207 - 35688269
Alignment:
| Q |
169 |
tggttgtagaagaagacactgttgatgttgatgataccaaaaaagatgttgtggaagaaactg |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35688207 |
tggttgtagaagaagacactgttgatgttgatgataccaaaaaagatgttgtggaagaaactg |
35688269 |
T |
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