View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13486_high_5 (Length: 254)
Name: NF13486_high_5
Description: NF13486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13486_high_5 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 18343814 - 18344034
Alignment:
| Q |
18 |
ttttgctatccatatctaactagataatgttgttttgatataaggttctaacgaatccatatttctcnnnnnnnnnn--attatcatattggcaaaaatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
18343814 |
ttttgctatccatatctaactagataatgttgttttgatataaggttctaacgaatccatatttgtcttttttttttttattatcatattggcaaaaatt |
18343913 |
T |
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| Q |
116 |
tctaaattcnnnnnnntccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaat |
215 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18343914 |
tctaaattcaaaaaaatccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaat |
18344013 |
T |
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| Q |
216 |
aatgaattcttagttccgtcc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
18344014 |
aatgaattcttagttccgtcc |
18344034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 36639000 - 36638896
Alignment:
| Q |
132 |
tccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttc |
231 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36639000 |
tccacattttcgcgggcgaatattcactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttc |
36638901 |
T |
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| Q |
232 |
cgtcc |
236 |
Q |
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||||| |
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| T |
36638900 |
cgtcc |
36638896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 36639090 - 36639056
Alignment:
| Q |
47 |
ttgttttgatataaggttctaacgaatccatattt |
81 |
Q |
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| T |
36639090 |
ttgttttgatataatgttctaacgaatccatattt |
36639056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 163529 - 163302
Alignment:
| Q |
18 |
ttttgctatccatatctaactagataatgttgttttgatataaggttctaacgaatccatatttctcnnnnnnnnnn---attatcatat----tggcaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||| |
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| T |
163529 |
ttttgctatccatatctaactagataatgttgttttgatataaggttctaacgaatccatatttgtctttttttttttttattatcatatatattggcaa |
163430 |
T |
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| Q |
111 |
aaatttctaaattcnnnnnnn-tccacattttcgcgggcgaatattt-actctttcattataaatttaagatgtaatgttgggttagtccacaactcctc |
208 |
Q |
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| T |
163429 |
aaatttctaaattaaaaaaaaatccacattttcgcgggcgaatattttactctttcattataaatttaagatgtgatgttggattagtccacaactcctc |
163330 |
T |
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| Q |
209 |
aaaaaataatgaattcttagttccgtcc |
236 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
163329 |
aaaaaataatgaattcttagttccgtcc |
163302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 9857913 - 9857705
Alignment:
| Q |
18 |
ttttgctatccatatctaactagataatgttgttttgatataaggttctaacgaatccatatttctcnnnnnnnnnnattatcatattggcaaaaatttc |
117 |
Q |
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| T |
9857913 |
ttttgctatc-atgtctaactagataatgttgttttgata--aggttctaaaaaatccatatttgtctttttttttta--atcatattggcaaaaattta |
9857819 |
T |
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| Q |
118 |
taaattcnnnnnnntccacattttcgcgggcgaatattt-actctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaata |
216 |
Q |
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||||||| ||||||||||| | | |||||||| ||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |
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| T |
9857818 |
taaattcaaaaaaatccacattttcacatgtgaatattttactctttcattataaatttaagatgtaatgtcagattagcccacaactcctcaaaaaata |
9857719 |
T |
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| Q |
217 |
atgaattcttagtt |
230 |
Q |
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|||||||||||||| |
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| T |
9857718 |
atgaattcttagtt |
9857705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 31878258 - 31878210
Alignment:
| Q |
132 |
tccacattttcgcgggcgaatatttactctttcattataaatttaagat |
180 |
Q |
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|||||||||| ||| |||||| ||||||||| |||||||||||||||| |
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| T |
31878258 |
tccacatttttgcgaccgaataattactctttaattataaatttaagat |
31878210 |
T |
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