View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13486_low_10 (Length: 239)

Name: NF13486_low_10
Description: NF13486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13486_low_10
NF13486_low_10
[»] chr5 (43 HSPs)
chr5 (1-222)||(34102191-34102412)
chr5 (40-222)||(16937800-16937981)
chr5 (37-215)||(10639932-10640109)
chr5 (78-210)||(32009676-32009808)
chr5 (34-216)||(25461559-25461739)
chr5 (36-133)||(7705911-7706008)
chr5 (79-216)||(29925819-29925955)
chr5 (79-215)||(16457935-16458070)
chr5 (43-133)||(9107150-9107240)
chr5 (36-126)||(12433086-12433176)
chr5 (54-136)||(15015901-15015982)
chr5 (55-184)||(12857637-12857765)
chr5 (53-222)||(12425543-12425713)
chr5 (53-144)||(40426813-40426905)
chr5 (177-216)||(12554497-12554536)
chr5 (36-207)||(43300865-43301035)
chr5 (32-114)||(6521157-6521239)
chr5 (153-210)||(25461075-25461132)
chr5 (161-222)||(27298046-27298106)
chr5 (59-136)||(31038341-31038418)
chr5 (59-136)||(31047565-31047642)
chr5 (39-136)||(32942651-32942748)
chr5 (55-207)||(12857270-12857421)
chr5 (76-136)||(32859673-32859733)
chr5 (76-136)||(32861845-32861905)
chr5 (76-136)||(32862629-32862689)
chr5 (54-126)||(42100378-42100450)
chr5 (1-32)||(14571001-14571032)
chr5 (175-214)||(32941444-32941483)
chr5 (153-216)||(32942596-32942659)
chr5 (27-77)||(34102009-34102060)
chr5 (37-121)||(39248170-39248250)
chr5 (164-210)||(10272471-10272517)
chr5 (154-216)||(17652239-17652301)
chr5 (36-86)||(35299872-35299922)
chr5 (54-138)||(2973474-2973559)
chr5 (177-210)||(29815140-29815173)
chr5 (35-100)||(34736439-34736504)
chr5 (91-208)||(37954672-37954788)
chr5 (1-37)||(16056733-16056769)
chr5 (1-29)||(22474054-22474082)
chr5 (1-29)||(29255767-29255795)
chr5 (36-124)||(39594876-39594964)
[»] chr1 (53 HSPs)
chr1 (41-217)||(3233933-3234108)
chr1 (53-207)||(49938734-49938887)
chr1 (54-136)||(2295153-2295235)
chr1 (34-210)||(36872716-36872887)
chr1 (54-222)||(473136-473302)
chr1 (38-222)||(14576569-14576751)
chr1 (110-222)||(17603371-17603482)
chr1 (53-216)||(6556949-6557112)
chr1 (106-222)||(41184633-41184748)
chr1 (81-222)||(24915009-24915149)
chr1 (32-121)||(38247399-38247488)
chr1 (116-208)||(42174841-42174932)
chr1 (42-136)||(37617384-37617478)
chr1 (54-130)||(5720988-5721064)
chr1 (71-202)||(5709619-5709746)
chr1 (75-141)||(44931907-44931974)
chr1 (93-219)||(51929509-51929634)
chr1 (54-222)||(1510241-1510408)
chr1 (36-136)||(3887545-3887645)
chr1 (54-130)||(5741669-5741745)
chr1 (54-222)||(13809970-13810137)
chr1 (36-116)||(39976123-39976203)
chr1 (161-216)||(27976573-27976628)
chr1 (54-133)||(29904811-29904890)
chr1 (53-111)||(33204324-33204382)
chr1 (161-210)||(1509735-1509784)
chr1 (42-127)||(50644174-50644259)
chr1 (54-113)||(2777971-2778030)
chr1 (175-222)||(14385814-14385861)
chr1 (164-219)||(23445309-23445364)
chr1 (42-89)||(27146174-27146221)
chr1 (175-222)||(30581999-30582046)
chr1 (54-121)||(38001667-38001734)
chr1 (161-216)||(41505664-41505719)
chr1 (172-222)||(30581774-30581823)
chr1 (37-131)||(33186368-33186462)
chr1 (1-30)||(1358288-1358317)
chr1 (1-30)||(24023360-24023389)
chr1 (175-204)||(33186256-33186285)
chr1 (53-126)||(36514606-36514679)
chr1 (153-222)||(37517223-37517292)
chr1 (149-222)||(37769685-37769758)
chr1 (182-210)||(12287250-12287278)
chr1 (1-29)||(16426904-16426932)
chr1 (183-215)||(27970354-27970386)
chr1 (171-222)||(30191963-30192015)
chr1 (161-216)||(30286556-30286612)
chr1 (175-207)||(33546504-33546536)
chr1 (36-120)||(34795359-34795443)
chr1 (1-29)||(37255242-37255270)
chr1 (1-29)||(40094444-40094472)
chr1 (1-29)||(47912568-47912596)
chr1 (1-29)||(50075730-50075758)
[»] chr7 (39 HSPs)
chr7 (40-216)||(19302480-19302651)
chr7 (62-215)||(19022524-19022676)
chr7 (55-222)||(33601342-33601507)
chr7 (36-216)||(48470022-48470201)
chr7 (57-210)||(34744012-34744164)
chr7 (54-205)||(11619089-11619239)
chr7 (54-205)||(27863656-27863806)
chr7 (34-120)||(36517650-36517736)
chr7 (153-215)||(46280301-46280363)
chr7 (58-222)||(420332-420495)
chr7 (42-222)||(20526418-20526597)
chr7 (38-133)||(4970707-4970802)
chr7 (38-135)||(5947299-5947396)
chr7 (37-222)||(17944257-17944441)
chr7 (34-111)||(38138403-38138480)
chr7 (55-111)||(18765366-18765422)
chr7 (32-120)||(48140276-48140363)
chr7 (75-194)||(19214358-19214476)
chr7 (77-215)||(43694522-43694661)
chr7 (148-215)||(45338428-45338494)
chr7 (153-210)||(4970822-4970879)
chr7 (55-192)||(21196271-21196406)
chr7 (53-216)||(45790360-45790517)
chr7 (75-194)||(14696338-14696458)
chr7 (42-114)||(33266405-33266477)
chr7 (34-209)||(49019853-49020028)
chr7 (109-222)||(30570917-30571029)
chr7 (176-222)||(119882-119928)
chr7 (82-136)||(21568454-21568508)
chr7 (148-206)||(38138503-38138561)
chr7 (54-126)||(3836614-3836687)
chr7 (1-30)||(7345014-7345043)
chr7 (1-30)||(14206446-14206475)
chr7 (1-30)||(14215136-14215165)
chr7 (44-108)||(9210906-9210970)
chr7 (182-222)||(20258484-20258524)
chr7 (1-29)||(22282469-22282497)
chr7 (1-29)||(28324716-28324744)
chr7 (172-216)||(48507700-48507744)
[»] chr4 (49 HSPs)
chr4 (38-216)||(17822780-17822957)
chr4 (37-211)||(21731570-21731743)
chr4 (39-201)||(54426036-54426197)
chr4 (43-143)||(15173223-15173323)
chr4 (78-222)||(50681044-50681187)
chr4 (37-222)||(54069336-54069515)
chr4 (41-207)||(49940085-49940252)
chr4 (54-192)||(39603102-39603238)
chr4 (36-222)||(55414326-55414518)
chr4 (36-222)||(27043743-27043928)
chr4 (76-210)||(2244032-2244168)
chr4 (36-216)||(44797864-44798037)
chr4 (149-215)||(53294139-53294205)
chr4 (38-222)||(39691064-39691241)
chr4 (53-133)||(22030263-22030343)
chr4 (36-136)||(42403936-42404035)
chr4 (103-210)||(7839341-7839447)
chr4 (153-222)||(9760412-9760481)
chr4 (36-98)||(18815118-18815180)
chr4 (172-222)||(42404046-42404096)
chr4 (38-185)||(26780-26925)
chr4 (36-201)||(24169256-24169420)
chr4 (119-208)||(33586951-33587039)
chr4 (153-209)||(16200010-16200066)
chr4 (76-136)||(21523614-21523674)
chr4 (53-136)||(25904153-25904236)
chr4 (175-209)||(31076437-31076471)
chr4 (106-204)||(50662721-50662818)
chr4 (172-201)||(6979010-6979039)
chr4 (57-114)||(8705020-8705077)
chr4 (153-222)||(17884040-17884109)
chr4 (1-30)||(33811259-33811288)
chr4 (1-30)||(35967497-35967526)
chr4 (92-207)||(46588042-46588157)
chr4 (1-30)||(53508495-53508524)
chr4 (1-30)||(53551711-53551740)
chr4 (35-72)||(54581065-54581102)
chr4 (177-213)||(2465972-2466008)
chr4 (176-216)||(20108987-20109027)
chr4 (53-113)||(22662090-22662150)
chr4 (53-113)||(22666569-22666629)
chr4 (76-120)||(29913020-29913064)
chr4 (1-29)||(30016856-30016884)
chr4 (1-29)||(34166108-34166136)
chr4 (161-213)||(42121469-42121521)
chr4 (44-116)||(49003963-49004035)
chr4 (1-29)||(50038446-50038474)
chr4 (1-29)||(50045668-50045696)
chr4 (1-29)||(56420547-56420575)
[»] chr2 (41 HSPs)
chr2 (56-222)||(32592559-32592723)
chr2 (62-222)||(43279466-43279625)
chr2 (32-197)||(26202025-26202189)
chr2 (32-170)||(15305698-15305835)
chr2 (42-207)||(15757577-15757741)
chr2 (58-223)||(41851506-41851670)
chr2 (42-207)||(20952342-20952506)
chr2 (53-215)||(24100905-24101068)
chr2 (34-133)||(30331811-30331910)
chr2 (35-111)||(42868393-42868469)
chr2 (148-222)||(39073713-39073787)
chr2 (41-98)||(27317025-27317082)
chr2 (38-98)||(9174910-9174970)
chr2 (54-126)||(42659142-42659214)
chr2 (39-216)||(27317358-27317533)
chr2 (153-216)||(40279175-40279238)
chr2 (57-216)||(45229490-45229647)
chr2 (31-96)||(7928206-7928271)
chr2 (161-222)||(12464510-12464571)
chr2 (139-216)||(27695610-27695687)
chr2 (53-121)||(43529788-43529857)
chr2 (155-223)||(39659540-39659608)
chr2 (1-33)||(40669079-40669111)
chr2 (53-136)||(449904-449987)
chr2 (55-222)||(1625872-1626038)
chr2 (38-100)||(15370238-15370301)
chr2 (1-32)||(25668527-25668558)
chr2 (1-32)||(37486115-37486146)
chr2 (38-133)||(42419853-42419948)
chr2 (1-30)||(4898160-4898189)
chr2 (1-30)||(4945554-4945583)
chr2 (1-30)||(9157969-9157998)
chr2 (153-210)||(11201411-11201468)
chr2 (153-222)||(20933727-20933796)
chr2 (161-218)||(28206243-28206300)
chr2 (1-30)||(30202600-30202629)
chr2 (36-108)||(3312162-3312234)
chr2 (1-29)||(10099548-10099576)
chr2 (36-80)||(28810365-28810409)
chr2 (38-126)||(31744365-31744453)
chr2 (1-29)||(44949338-44949366)
[»] chr3 (39 HSPs)
chr3 (34-223)||(39980700-39980888)
chr3 (54-136)||(31365119-31365201)
chr3 (54-216)||(20880454-20880615)
chr3 (76-222)||(20257507-20257653)
chr3 (57-216)||(30443871-30444029)
chr3 (55-213)||(18405763-18405920)
chr3 (54-136)||(31365240-31365322)
chr3 (42-210)||(24684741-24684909)
chr3 (43-222)||(584018-584196)
chr3 (148-222)||(20170495-20170569)
chr3 (100-216)||(36631028-36631143)
chr3 (148-215)||(47132310-47132377)
chr3 (54-215)||(13715503-13715665)
chr3 (54-222)||(21367639-21367806)
chr3 (43-135)||(51929277-51929369)
chr3 (54-141)||(46778122-46778209)
chr3 (161-216)||(49034300-49034355)
chr3 (31-89)||(16072949-16073007)
chr3 (40-121)||(9832672-9832753)
chr3 (161-206)||(12862285-12862330)
chr3 (161-222)||(30956663-30956724)
chr3 (161-222)||(30972475-30972536)
chr3 (153-222)||(36189538-36189607)
chr3 (54-133)||(22897-22976)
chr3 (54-121)||(24085269-24085336)
chr3 (75-130)||(42320276-42320331)
chr3 (153-207)||(22203417-22203471)
chr3 (81-143)||(26911635-26911697)
chr3 (153-222)||(14145884-14145953)
chr3 (1-30)||(19678957-19678986)
chr3 (1-30)||(19679078-19679107)
chr3 (41-98)||(25447163-25447220)
chr3 (177-210)||(47587452-47587485)
chr3 (153-202)||(49092771-49092820)
chr3 (58-98)||(3845498-3845538)
chr3 (183-215)||(31365359-31365391)
chr3 (154-222)||(33405197-33405265)
chr3 (1-29)||(44687896-44687924)
chr3 (39-114)||(47132397-47132470)
[»] chr8 (29 HSPs)
chr8 (55-215)||(26771244-26771403)
chr8 (76-222)||(10758210-10758354)
chr8 (76-222)||(28763340-28763485)
chr8 (36-210)||(30251367-30251540)
chr8 (37-222)||(35534527-35534709)
chr8 (35-136)||(35643900-35644001)
chr8 (53-216)||(27028809-27028971)
chr8 (31-114)||(43717842-43717925)
chr8 (76-210)||(6881911-6882044)
chr8 (106-222)||(16825521-16825635)
chr8 (41-133)||(36963272-36963364)
chr8 (37-109)||(38602411-38602483)
chr8 (34-216)||(15180519-15180698)
chr8 (54-215)||(38648330-38648490)
chr8 (175-222)||(38750330-38750377)
chr8 (54-222)||(1058008-1058172)
chr8 (153-207)||(11861791-11861845)
chr8 (148-206)||(29818938-29818996)
chr8 (75-216)||(29205786-29205925)
chr8 (176-215)||(16734008-16734047)
chr8 (39-170)||(43045641-43045771)
chr8 (54-100)||(9130250-9130296)
chr8 (36-98)||(12496985-12497047)
chr8 (54-136)||(31716158-31716240)
chr8 (36-97)||(8407738-8407799)
chr8 (1-30)||(40802198-40802227)
chr8 (161-209)||(25930591-25930639)
chr8 (156-216)||(42043377-42043437)
chr8 (1-29)||(42631775-42631803)
[»] chr6 (21 HSPs)
chr6 (35-221)||(6538485-6538672)
chr6 (36-210)||(6536599-6536769)
chr6 (153-215)||(8201212-8201274)
chr6 (42-210)||(35099021-35099187)
chr6 (33-117)||(21405064-21405148)
chr6 (34-132)||(848050-848147)
chr6 (59-121)||(9559358-9559420)
chr6 (102-207)||(6200546-6200651)
chr6 (177-222)||(6909925-6909970)
chr6 (163-215)||(11784069-11784121)
chr6 (44-223)||(13907556-13907732)
chr6 (62-126)||(30536570-30536634)
chr6 (161-216)||(415282-415337)
chr6 (165-216)||(24626273-24626324)
chr6 (1-31)||(33169298-33169328)
chr6 (39-88)||(103535-103584)
chr6 (161-222)||(18076168-18076229)
chr6 (153-210)||(34430490-34430547)
chr6 (57-121)||(23063468-23063532)
chr6 (38-134)||(30926578-30926674)
chr6 (73-121)||(31813233-31813281)
[»] scaffold0057 (2 HSPs)
scaffold0057 (55-126)||(24688-24759)
scaffold0057 (54-111)||(44115-44172)
[»] scaffold0528 (1 HSPs)
scaffold0528 (59-136)||(918-995)
[»] scaffold0050 (1 HSPs)
scaffold0050 (34-190)||(58746-58901)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 43)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34102191 - 34102412
Alignment:
Q  1 tttgcttatatttagaaacggagggagtatcacttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttggg 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34102191 tttgtttatatttagaaacggagggagtatcacttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttggg 34102290  T
Q  101 ggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34102291 ggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatat 34102390  T
Q  201 acaaaaacaaattaacattatt 222  Q
    ||||||||||||||||||||||    
T  34102391 acaaaaacaaattaacattatt 34102412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 16937800 - 16937981
Alignment:
Q  40 cctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataactt 139  Q
    |||||||||| |  |||||||||||||| ||| | ||||||||||||||| | |||||||  ||| ||||||||| |||||| ||||| ||||||||  |    
T  16937800 cctgtttggattggcttatttgagcttatctactagcataagttttgtgagagtgtttggaagaacttatgaaaacagcttatgacaaatttcataagct 16937899  T
Q  140 ttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    ||||   | ||| ||||| | |||||||||| || || ||||||||||||||||||||||||||||||||| ||||| |||||    
T  16937900 tttttcag-cttattttcctaagttctccaatatagcgtataaaaacaacttatagcatatacaaaaacaatttaacgttatt 16937981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 215
Target Start/End: Complemental strand, 10640109 - 10639932
Alignment:
Q  37 gggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    ||||||||||||| |  |||||||||| ||| ||| || |||||||||||||| | |||||||| ||| ||||||||| |||||| |||| |||||||||    
T  10640109 gggcctgtttggattagcttatttgagtttatctactgacataagttttgtgatattgtttgggagaacttatgaaaacagcttatgacatttttcataa 10640010  T
Q  137 cttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaa 215  Q
      ||||| | | ||| ||||||| |||||||||| || | ||||  |||||||| ||  ||||||||||||||| ||||    
T  10640009 gctttttctag-cttattttcataagttctccaaaatagtttatgtaaacaactcatcacatatacaaaaacaatttaa 10639932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 32009808 - 32009676
Alignment:
Q  78 taagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggct 177  Q
    |||||||||||| ||| |||||   || ||||||||| |||||  ||||||||||||||   |||| |  |||||||||||| |||||||||| || |||    
T  32009808 taagttttgtgagactatttggaaaaacttatgaaaacagcttgtgacaattttcataaagcttttttgaacttgttttcataagttctccaatatagct 32009709  T
Q  178 tataaaaacaacttatagcatatacaaaaacaa 210  Q
    ||||||||||| ||||||||||||||| |||||    
T  32009708 tataaaaacaatttatagcatatacaagaacaa 32009676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 216
Target Start/End: Original strand, 25461559 - 25461739
Alignment:
Q  34 ttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttca 133  Q
    |||||||| ||||||| |  |||||||||||||| ||||  ||||||| ||||||| |||||||||  |||||  || |||||||||| | |||||||||    
T  25461559 ttagggcccgtttggattggcttatttgagcttatctatcagcataag-tttgtgatactgtttggtagaattcttggaaatagcttatggcaattttca 25461657  T
Q  134 taacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    |||   ||| ||  |||| |||| || |||||||||| |  |||||||||||||||||||| ||||||| ||| ||| |||||    
T  25461658 taa-gctttgatcaacttattttaataagttctccaatagagcttataaaaacaacttataacatatactaaaccaatttaac 25461739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 7705911 - 7706008
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttca 133  Q
    |||||||||||||| | |||||||||||| || ||| | |||||||||||||||| || |||||| ||| ||||||||| |||||| |||| ||||||    
T  7705911 agggcctgtttggattgacttatttgagcatatctactagcataagttttgtgacgctctttgggagaacttatgaaaacagcttatgacagttttca 7706008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 216
Target Start/End: Complemental strand, 29925955 - 29925819
Alignment:
Q  79 aagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggctt 178  Q
    ||||||||||| || ||||||| ||| ||||||||| |||||| |||||| |||||   |||||| |  |||| ||||||| |||||||||| || ||||    
T  29925955 aagttttgtgagaccgtttgggagaacttatgaaaacagcttatgacaatgttcatgtgtttttt-tcaacttattttcataagttctccaatatagctt 29925857  T
Q  179 ataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    ||  ||||||||||||||| ||||| |||||| |||||    
T  29925856 atgtaaacaacttatagcacatacagaaacaatttaac 29925819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 16457935 - 16458070
Alignment:
Q  79 aagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggctt 178  Q
    ||||||||||| |||||||||| ||| ||||||||| |||||| |||| |||||||||  | |||   |  || ||||||  ||||||||||  | |||     
T  16457935 aagttttgtgagactgtttgggagaacttatgaaaacagcttatgacagttttcataagctcttttcagt-ttattttcacaagttctccaatttagctc 16458033  T
Q  179 ataaaaacaacttatagcatatacaaaaacaaattaa 215  Q
    |||||||||||||||||||||||||||||||| ||||    
T  16458034 ataaaaacaacttatagcatatacaaaaacaatttaa 16458070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 9107240 - 9107150
Alignment:
Q  43 gtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttca 133  Q
    ||||||| | ||||||||||| ||| ||| || |||||||||||||| | |||||||| ||| | ||||||| |||||| |||||||||||    
T  9107240 gtttggattgacttatttgagtttatctagtgacataagttttgtgagaatgtttgggagaactcatgaaaacagcttaggacaattttca 9107150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 12433086 - 12433176
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagaca 126  Q
    |||||||||||||| |  ||||||||| ||||  || ||||||| ||||||||| | |||||||| ||| |||||||||||||||| ||||    
T  12433086 agggcctgtttggattggcttatttgaacttatttactggcataggttttgtgagattgtttgggagaagttatgaaaatagcttacgaca 12433176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 15015982 - 15015901
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    |||||||||||||| ||| || |||||| ||||||| |||||||||| ||| |||||||||||  | ||||||||||||||||    
T  15015982 cttatttgagcttatctactgacataagctttgtgagactgtttgggagaacttatgaaaata-ttgaagacaattttcataa 15015901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 184
Target Start/End: Original strand, 12857637 - 12857765
Alignment:
Q  55 ttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgtt 154  Q
    ||||||||||| | |||||| | |||||||||||| ||||||  || ||| ||||||||| | |||| ||||||||||| ||| ||||| |   ||| ||    
T  12857637 ttatttgagctcatctattgacgtaagttttgtgaaactgttccggagaacttatgaaaacaacttatgacaattttcacaaccttttt-tcagcttatt 12857735  T
Q  155 ttcatgagttctccaacatggcttataaaa 184  Q
    ||||| |||||||||| || ||||||||||    
T  12857736 ttcataagttctccaatatagcttataaaa 12857765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 12425713 - 12425543
Alignment:
Q  53 acttatttgagcttaactattggcataagttttgtgacactgtttgggggaa--tttatgaaaatagcttaagacaattttcataacttttttattgact 150  Q
    ||||||||||||||| ||| || |||||||||||||| |||||||||| |||  | |||||||| | | ||| ||| | |  |||| || ||| |  |||    
T  12425713 acttatttgagcttatctactgtcataagttttgtgagactgtttgggagaacttatatgaaaacaacctaaaacattgtcaataagttgttt-tcaact 12425615  T
Q  151 tgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    | ||||||| |||||||||| || |||| | |||||| |||||||| ||||| ||||||| ||||| |||||    
T  12425614 tattttcataagttctccaagatagcttgtgaaaacagcttatagcttatacgaaaacaatttaactttatt 12425543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 40426905 - 40426813
Alignment:
Q  53 acttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa-ctttttta 144  Q
    ||||||||||||||| ||| || ||||| |||||||| ||||||||||||   ||||||||| |||||| | || ||||||||| ||||||||    
T  40426905 acttatttgagcttatctaatgacataaattttgtgagactgtttgggggtgcttatgaaaacagcttatgccatttttcataagctttttta 40426813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 12554536 - 12554497
Alignment:
Q  177 ttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  12554536 ttataaaaacaacttatagcatatacaaaaacaatttaac 12554497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 207
Target Start/End: Complemental strand, 43301035 - 43300865
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcata 135  Q
    ||||| |||||||| |  ||||||||||||||  || ||||||||||||| ||| |||||| ||| ||| |||| |||| ||| || |||| |||  |||    
T  43301035 agggcatgtttggattggcttatttgagcttatataatggcataagttttatgagactgttggggagaagttataaaaacagcctatgacattttatata 43300936  T
Q  136 acttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaa 207  Q
    |   | ||   | ||| ||||||| |||||||||| || ||||| ||||||||||||||| |||||||||||    
T  43300935 agcatgtttcag-cttattttcataagttctccaagatagcttacaaaaacaacttataggatatacaaaaa 43300865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 6521239 - 6521157
Alignment:
Q  32 acttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaa 114  Q
    |||| ||||||||||||| | ||||||| ||||| ||||| || |||| ||||||||| | |||||||| ||| |||||||||    
T  6521239 actttgggcctgtttggattgacttattagagctgaactactgacatatgttttgtgagattgtttgggagaacttatgaaaa 6521157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 25461132 - 25461075
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaa 210  Q
    ||||||| |||||||||| |  |||||| ||||||||||||| |||||||||||||||    
T  25461132 ttttcatcagttctccaatagagcttatgaaaacaacttataacatatacaaaaacaa 25461075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 27298106 - 27298046
Alignment:
Q  161 agttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||||||| ||  |||||||||||||||||||||||||| |||||||| | |||||||||    
T  27298106 agttctccaatatatcttataaaaacaacttatagcatata-aaaaacaattaaacattatt 27298046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 31038418 - 31038341
Alignment:
Q  59 ttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    ||||||||| |||  |||||||||||||||| ||||||| ||  || |||| ||||||||||| |||| |||||||||    
T  31038418 ttgagcttatctaccggcataagttttgtgatactgttttggacaacttataaaaatagcttatgacatttttcataa 31038341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 31047642 - 31047565
Alignment:
Q  59 ttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    ||||||||| |||  |||||||||||||||| ||||||| ||  || |||| ||||||||||| |||| |||||||||    
T  31047642 ttgagcttatctaccggcataagttttgtgatactgttttggacaacttataaaaatagcttatgacatttttcataa 31047565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 32942748 - 32942651
Alignment:
Q  39 gcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    ||||||||||| | ||||||  ||||||  ||| || ||||||||||||   |||||||||| ||||||||||| | |||||| |||| |||||||||    
T  32942748 gcctgtttggattgacttatacgagcttttctactgacataagttttgtttgactgtttgggagaatttatgaatacagcttatgacatttttcataa 32942651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 207
Target Start/End: Original strand, 12857270 - 12857421
Alignment:
Q  55 ttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgtt 154  Q
    ||||||||||||| |||||| | |||||||||||| ||| ||  || ||| ||||||||| | |||| ||||||||||| ||  ||||| |   ||| ||    
T  12857270 ttatttgagcttatctattgacgtaagttttgtgaaacttttccggagaacttatgaaaacaacttatgacaattttcacaagcttttt-tcagcttatt 12857368  T
Q  155 ttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaa 207  Q
    ||  | |||||||||| || |||||||||| || || ||||||| ||||||||    
T  12857369 tttgtaagttctccaatatagcttataaaatcagctaatagcatgtacaaaaa 12857421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 32859673 - 32859733
Alignment:
Q  76 cataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    ||||| ||||||||||||||||||  ||||||||||||| | |||| |||| |||||||||    
T  32859673 cataaattttgtgacactgtttggaagaatttatgaaaacaacttacgacatttttcataa 32859733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 32861845 - 32861905
Alignment:
Q  76 cataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    ||||| ||||||||||||||||||  ||||||||||||| | |||| |||| |||||||||    
T  32861845 cataaattttgtgacactgtttggaagaatttatgaaaacaacttacgacatttttcataa 32861905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 32862629 - 32862689
Alignment:
Q  76 cataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    ||||| ||||||||||||||||||  ||||||||||||| | |||| |||| |||||||||    
T  32862629 cataaattttgtgacactgtttggaagaatttatgaaaacaacttacgacatttttcataa 32862689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 42100450 - 42100378
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagaca 126  Q
    |||||||||||||| |||||||||||| |||||||  ||||| || | ||| || ||||||||||||| ||||    
T  42100450 cttatttgagcttatctattggcataaattttgtgtgactgtgtgagagaacttgtgaaaatagcttatgaca 42100378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 14571032 - 14571001
Alignment:
Q  1 tttgcttatatttagaaacggagggagtatca 32  Q
    ||||||||||||||||||||||||||||||||    
T  14571032 tttgcttatatttagaaacggagggagtatca 14571001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 32941483 - 32941444
Alignment:
Q  175 gcttataaaaacaacttatagcatatacaaaaacaaatta 214  Q
    ||||||||||||||||||||||||| ||||||||| ||||    
T  32941483 gcttataaaaacaacttatagcatacacaaaaacacatta 32941444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 32942659 - 32942596
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    ||||||| |||||||||| || |||||| |||||| ||||||||||||| |||||  |||||||    
T  32942659 ttttcataagttctccaagatagcttatgaaaacagcttatagcatataaaaaaaagaattaac 32942596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 34102009 - 34102060
Alignment:
Q  27 gtatcacttagggcctgt-ttggaatcacttatttgagcttaactattggca 77  Q
    |||| ||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  34102009 gtattacttaaggcctgtgttggaatcacttatttgagcttaactactggca 34102060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 39248250 - 39248170
Alignment:
Q  37 gggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagctta 121  Q
    |||||||||||||   |||||||||||||||    || ||||||||||||||| |||||||||| ||| |||| |||| ||||||    
T  39248250 gggcctgtttggatcgacttatttgagctta----ttagcataagttttgtgagactgtttgggagaacttataaaaacagctta 39248170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 10272471 - 10272517
Alignment:
Q  164 tctccaacatggcttataaaaacaacttatagcatatacaaaaacaa 210  Q
    ||||||| ||||||||| ||||||||||||||| ||||| |||||||    
T  10272471 tctccaagatggcttatgaaaacaacttatagcttatacgaaaacaa 10272517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 17652301 - 17652239
Alignment:
Q  154 tttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    |||||| |||| | |||||| |||||| |||||||||||||| |||||||||| ||| |||||    
T  17652301 tttcataagttgttcaacatagcttatgaaaacaacttatagtatatacaaaagcaatttaac 17652239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 35299922 - 35299872
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttg 86  Q
    |||||||||||||| | ||||||||||||||| |||||| ||| |||||||    
T  35299922 agggcctgtttggattgacttatttgagcttatctattgacatgagttttg 35299872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 2973474 - 2973559
Alignment:
Q  54 cttatttgagcttaactattggcataagtttt-gtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataact 138  Q
    ||||||| |||||| ||| || |||||||||| ||||  ||| || || ||| ||||||||| |||||| ||||||||||||||||    
T  2973474 cttatttaagcttatctagtgacataagtttttgtgaacctgcttaggagaacttatgaaaacagcttatgacaattttcataact 2973559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 29815140 - 29815173
Alignment:
Q  177 ttataaaaacaacttatagcatatacaaaaacaa 210  Q
    ||||| ||||||||||||||||||||||||||||    
T  29815140 ttatagaaacaacttatagcatatacaaaaacaa 29815173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 34736439 - 34736504
Alignment:
Q  35 tagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttggg 100  Q
    |||||| |||||||| | ||||||||||||||| ||  || |||||||||||||| || |||||||    
T  34736439 tagggcatgtttggattgacttatttgagcttatctggtgacataagttttgtgagacagtttggg 34736504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 37954788 - 37954672
Alignment:
Q  91 actgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaact 190  Q
    |||||| ||| || |||||||||| |||||| || ||||||||| |  ||||| |  |||| |||||||  ||||||||| || ||||||||||||||||    
T  37954788 actgttcgggagagtttatgaaaacagcttatgaaaattttcattagcttttt-tcaacttattttcatatgttctccaatatagcttataaaaacaact 37954690  T
Q  191 tatagcatatacaaaaac 208  Q
    | ||  | ||||||||||    
T  37954689 tgtacaacatacaaaaac 37954672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16056769 - 16056733
Alignment:
Q  1 tttgcttatatttagaaacggagggagtatcacttag 37  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  16056769 tttgcttatattttgaaacggagggagtaccacttag 16056733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 22474054 - 22474082
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  22474054 tttgcttatatttagaaacggagggagta 22474082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29255767 - 29255795
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  29255767 tttgcttatatttagaaacggagggagta 29255795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 39594964 - 39594876
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaaga 124  Q
    ||||| |||||||| | ||||||||||||||| |||  | |||||||||||| | | ||||||||  || ||||||||| |||| ||||    
T  39594964 agggcttgtttggattgacttatttgagcttatctaccgacataagttttgttagattgtttgggacaacttatgaaaacagctgaaga 39594876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 53)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 41 - 217
Target Start/End: Original strand, 3233933 - 3234108
Alignment:
Q  41 ctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttt 140  Q
    ||||||||| | ||||||||||||||| ||| || | |||||||||||| |||||| ||| ||| ||||||||| | ||||  ||| ||||||||| |||    
T  3233933 ctgtttggattgacttatttgagcttatctagtgccgtaagttttgtgagactgttagggagaacttatgaaaacaacttataacagttttcataagttt 3234032  T
Q  141 tttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaaca 217  Q
    |||  | |||| ||||||| |||||||||| || |||||||||||||||||||||||||||||||||||| ||||||    
T  3234033 ttttct-acttattttcataagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaatttaaca 3234108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 207
Target Start/End: Complemental strand, 49938887 - 49938734
Alignment:
Q  53 acttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttg 152  Q
    ||||||||||| |||  |  ||||||||||||||||| | |||||||| ||| ||||||||| |||||| ||||||||||| ||  ||||| |  ||||     
T  49938887 acttatttgagtttatatcgtggcataagttttgtgagattgtttgggagaacttatgaaaacagcttatgacaattttcaaaagcttttt-tcaactta 49938789  T
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaa 207  Q
    ||||||| ||||||| || || |||||||||||||||||||| ||||||||||||    
T  49938788 ttttcataagttctctaatatagcttataaaaacaacttataacatatacaaaaa 49938734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 2295235 - 2295153
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    |||||||||||||| ||| ||||||||||||||||| |||||||||| ||| ||||||||| |||||| ||||||||||||||    
T  2295235 cttatttgagcttatctactggcataagttttgtgagactgtttgggagaacttatgaaaacagcttatgacaattttcataa 2295153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 210
Target Start/End: Complemental strand, 36872887 - 36872716
Alignment:
Q  34 ttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttca 133  Q
    |||||||||||||||| |  ||||||| ||||||||||    ||||||||||| || ||||||| || |||||||||||||   |||| ||||||||| |    
T  36872887 ttagggcctgtttggattggcttatttaagcttaactaacaacataagttttgcgagactgttttggagaatttatgaaaa---cttatgacaattttga 36872791  T
Q  134 taa-cttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaa 210  Q
    ||| |||||| |   |||| ||||||| |||||| ||| || |||| |||||||||||||||||| ||||||||||||    
T  36872790 taagctttttca---acttattttcataagttctgcaatatagcttgtaaaaacaacttatagcacatacaaaaacaa 36872716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 473302 - 473136
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgt 153  Q
    ||||||||||| || ||| ||||||||||| ||||| ||  |||||| ||| ||||||||| ||||||  |||||||||||||  ||||| |  |||| |    
T  473302 cttatttgagcctatctactggcataagttctgtgaaacattttgggagaacttatgaaaaaagcttat-acaattttcataagcttttt-tcaacttat 473205  T
Q  154 tttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||| |||||||||| |   |||||||||||||||||||||||| || ||||||| ||||| |||||    
T  473204 tttcataagttctccaatagaacttataaaaacaacttatagcatacacgaaaacaatttaactttatt 473136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 14576569 - 14576751
Alignment:
Q  38 ggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataac 137  Q
    |||||||||||| |  |||||||||||||| ||| |||| ||| ||||||| |||||||||||  || || |||||| |||||| ||||||||||| ||     
T  14576569 ggcctgtttggattggcttatttgagcttatctactggcttaaattttgtggcactgtttgggacaacttgtgaaaacagcttatgacaattttcaaaag 14576668  T
Q  138 ttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
     ||||| |   ||| ||||||  ||||||| || || ||||||||||| || ||||||||||||||||||||| ||||| |||||    
T  14576669 cttttt-tcagcttattttca-aagttctctaatatagcttataaaaaaaaattatagcatatacaaaaacaatttaactttatt 14576751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 17603371 - 17603482
Alignment:
Q  110 gaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaaca 209  Q
    ||||| |||||| ||||||||||||||  ||||||   |||| ||||||  |||||||||| || |||||||||||||||||||||||||||||||||||    
T  17603371 gaaaacagcttatgacaattttcataaactttttaca-acttattttcagaagttctccaatatagcttataaaaacaacttatagcatatacaaaaaca 17603469  T
Q  210 aattaacattatt 222  Q
    | ||||| |||||    
T  17603470 atttaacgttatt 17603482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 216
Target Start/End: Complemental strand, 6557112 - 6556949
Alignment:
Q  53 acttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttg 152  Q
    |||||||||| |||| ||| |  |||||||||||||| ||| |||| | ||| |||||||||||||||| |||| |||||| ||  ||||| ||  |||     
T  6557112 acttatttgaacttatctactaacataagttttgtgagactatttgagagaacttatgaaaatagcttatgacagttttcaaaaggttttttttagctta 6557013  T
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    || |||| ||||||  || ||  ||||||||||||||||||| ||||||||||||||| |||||    
T  6557012 ttgtcataagttctttaatataacttataaaaacaacttataacatatacaaaaacaatttaac 6556949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 41184633 - 41184748
Alignment:
Q  106 ttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaa 205  Q
    |||||||||||||||| |||||||||||||| |||||| |  |||| ||||||| |||| ||||| ||||  ||||||| ||| |||||  |||||||||    
T  41184633 ttatgaaaatagcttatgacaattttcataagtttttt-tcaacttattttcataagttttccaatatggtatataaaaccaaattataatatatacaaa 41184731  T
Q  206 aacaaattaacattatt 222  Q
    ||||| |||||||||||    
T  41184732 aacaatttaacattatt 41184748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 24915009 - 24915149
Alignment:
Q  81 gttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggcttat 180  Q
    |||||||||  |||||||||  |||||||||||| | |||| |||| |||||||||  ||||| |  |||| ||||||  |||||||||| |  ||||||    
T  24915009 gttttgtgaggctgtttgggacaatttatgaaaacaacttatgacatttttcataagcttttt-tcaacttattttcacaagttctccaagacagcttat 24915107  T
Q  181 aaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
     |||||| |||||||||||||||||||||| ||||| |||||    
T  24915108 gaaaacagcttatagcatatacaaaaacaatttaactttatt 24915149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 38247488 - 38247399
Alignment:
Q  32 acttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagctta 121  Q
    |||||||||||||||||| |   |||||||| |||| ||| |||||||||||||||| ||||||||||| ||| ||||||||| ||||||    
T  38247488 acttagggcctgtttggattgggttatttgaacttatctactggcataagttttgtgtcactgtttgggagaacttatgaaaacagctta 38247399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 42174932 - 42174841
Alignment:
Q  116 agcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaac 208  Q
    |||||| ||||||||||||||  | ||| || |||| ||||||| |||||||||| ||  |||||||||||||||||||||||||||||||||    
T  42174932 agcttatgacaattttcataagctgttt-ttaacttattttcataagttctccaatataacttataaaaacaacttatagcatatacaaaaac 42174841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 136
Target Start/End: Original strand, 37617384 - 37617478
Alignment:
Q  42 tgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    |||||||| | ||||||||||| ||| |||||| | |||||||||||| |||||||| | ||||||||||||| |||||  ||||| ||||||||    
T  37617384 tgtttggattgacttatttgagtttatctattgccgtaagttttgtgagactgtttgcgagaatttatgaaaacagcttttgacaaatttcataa 37617478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 5721064 - 5720988
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattt 130  Q
    |||||||||||||||||| | |||||||||||||   |||||||||| ||| ||||||||| |||||| ||||||||    
T  5721064 cttatttgagcttaactacttgcataagttttgttggactgtttgggagaacttatgaaaacagcttatgacaattt 5720988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 202
Target Start/End: Complemental strand, 5709746 - 5709619
Alignment:
Q  71 attggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa-cttttttattgacttgttttcatgagttctcca 169  Q
    |||| ||||| |||||||||  |||||||| |||||||||||||||||||  | |||||||||||| |||||| |   |||| ||||||  |||||||||    
T  5709746 attgacataaattttgtgac--tgtttgggagaatttatgaaaatagcttttggcaattttcataagctttttca---acttattttcacaagttctcca 5709652  T
Q  170 acatggcttataaaaacaacttatagcatatac 202  Q
    | || |||| |||||||| |||||| |||||||    
T  5709651 atatagcttctaaaaacaccttataccatatac 5709619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 44931907 - 44931974
Alignment:
Q  75 gcataagttttgtgacactgtttgggggaatttatg-aaaatagcttaagacaattttcataactttt 141  Q
    |||||||||||| || |||||||||| ||||||||| ||||||||||| |||||||||||||| ||||    
T  44931907 gcataagttttgagagactgtttgggagaatttatgaaaaatagcttatgacaattttcataagtttt 44931974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 219
Target Start/End: Original strand, 51929509 - 51929634
Alignment:
Q  93 tgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaactta 192  Q
    |||||||| ||||| ||||||| |||||| ||||||||||||||  ||||| |  |||| ||| ||| |||||||||| || | ||||||||||| ||||    
T  51929509 tgtttgggagaattcatgaaaacagcttatgacaattttcataagcttttt-tcaacttatttccataagttctccaatatagtttataaaaacagctta 51929607  T
Q  193 tagcatatacaaaaacaaattaacatt 219  Q
      ||||||| |||||||| || |||||    
T  51929608 aggcatatataaaaacaattttacatt 51929634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 222
Target Start/End: Original strand, 1510241 - 1510408
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgt 153  Q
    |||||||||| |||  |||  ||||||||||||||| ||||||||| |||  || || ||  || ||  | ||||||||||||  ||||| |  |||| |    
T  1510241 cttatttgagtttatatatcagcataagttttgtgatactgtttggtggagcttttggaagcagtttttgccaattttcataagcttttt-tcaacttat 1510339  T
Q  154 tttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||| | |||||||||| |  |||||||||||||||||||| | ||||||||||||| | |||||||||    
T  1510340 tttcgtaagttctccaatagagcttataaaaacaacttataacctatacaaaaacaattgaacattatt 1510408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 3887545 - 3887645
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcata 135  Q
    |||| ||||||||| | |||||||||||||| |||||||| ||||||||||| |  ||||||||  ||| ||||||||| | |||| |||| | ||||||    
T  3887545 agggtctgtttggattgacttatttgagctttactattggtataagttttgtaaggctgtttggaagaacttatgaaaacatcttatgacattgttcata 3887644  T
Q  136 a 136  Q
    |    
T  3887645 a 3887645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 5741745 - 5741669
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattt 130  Q
    |||||||||||||||||| | |||||||||||||   |||||||||| ||| ||||||||| | |||| ||||||||    
T  5741745 cttatttgagcttaactacttgcataagttttgttgaactgtttgggagaacttatgaaaacaacttatgacaattt 5741669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 13810137 - 13809970
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgt 153  Q
    |||||||| ||||| ||| || | |||||||||||| ||| |||  | ||| ||||||| | || ||| ||||||||||| || |||||  | | ||| |    
T  13810137 cttatttgtgcttatctactgacgtaagttttgtgagactcttttagagaacttatgaatacagtttatgacaattttcaaaagtttttcttag-cttat 13810039  T
Q  154 tttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||  ||||||| || || | ||||||||||||  |||||||||||||||||||| ||||| |||||    
T  13810038 tttcacaagttctctaatatagtttataaaaacaatatatagcatatacaaaaacaatttaactttatt 13809970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 39976123 - 39976203
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaata 116  Q
    |||||| ||||||| | ||||||||||| ||| ||| || |||||||||||||| |||||||| | ||| |||||||||||    
T  39976123 agggccagtttggactgacttatttgagattatctactgacataagttttgtgaaactgtttgagagaacttatgaaaata 39976203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 27976628 - 27976573
Alignment:
Q  161 agttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    ||||||| || || |||||| ||||||||||||||||||||||||||||| |||||    
T  27976628 agttctcgaagatagcttatgaaaacaacttatagcatatacaaaaacaatttaac 27976573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 29904890 - 29904811
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttca 133  Q
    |||||||||||||| ||| | ||||||||||||||| |||||||| | ||| |||| |||| |||||| | |||||||||    
T  29904890 cttatttgagcttatctacttgcataagttttgtgagactgtttgagagaacttataaaaacagcttatggcaattttca 29904811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 33204324 - 33204382
Alignment:
Q  53 acttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatga 111  Q
    ||||||||||||||| ||| || |||||||||||||| |||||||||| ||| ||||||    
T  33204324 acttatttgagcttatctactgacataagttttgtgagactgtttgggagaacttatga 33204382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 1509784 - 1509735
Alignment:
Q  161 agttctccaacatggcttataaaaacaacttatagcatatacaaaaacaa 210  Q
    ||||||||||||  |||||||||||||||||||  |||||||||||||||    
T  1509784 agttctccaacagagcttataaaaacaacttattacatatacaaaaacaa 1509735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 50644174 - 50644259
Alignment:
Q  42 tgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaa 127  Q
    |||||||| | ||||||||||||||| ||| |  |||| ||||||||| |||||||||| ||| ||||||||| | |||| |||||    
T  50644174 tgtttggattgacttatttgagcttatctactaacatatgttttgtgagactgtttgggagaacttatgaaaacaacttacgacaa 50644259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 2778030 - 2777971
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaa 113  Q
    ||||||| |||||| ||||| ||||||||||||||| ||||||| || ||| ||||||||    
T  2778030 cttattttagcttatctatttgcataagttttgtgagactgtttaggagaacttatgaaa 2777971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 14385814 - 14385861
Alignment:
Q  175 gcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    ||||| |||||||||||||| || |||||||||||| |||||||||||    
T  14385814 gcttacaaaaacaacttataacagatacaaaaacaatttaacattatt 14385861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 23445364 - 23445309
Alignment:
Q  164 tctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacatt 219  Q
    ||||||| || |||||| |||||||||||| || ||||||||||||| ||||||||    
T  23445364 tctccaagatagcttatgaaaacaacttatggcttatacaaaaacaatttaacatt 23445309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 27146174 - 27146221
Alignment:
Q  42 tgtttggaatcacttatttgagcttaactattggcataagttttgtga 89  Q
    |||||||| | ||| ||||||||||| |||||||||||||||||||||    
T  27146174 tgtttggattgactgatttgagcttatctattggcataagttttgtga 27146221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 30581999 - 30582046
Alignment:
Q  175 gcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    ||||||||||||| ||| |||||||||||||||||| ||||| |||||    
T  30581999 gcttataaaaacagcttgtagcatatacaaaaacaagttaactttatt 30582046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 38001734 - 38001667
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagctta 121  Q
    |||||||||| ||| | | || |||||||||||||| |||||||||| ||| ||||||||| ||||||    
T  38001734 cttatttgagtttatcaactgacataagttttgtgagactgtttgggagaacttatgaaaacagctta 38001667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 41505719 - 41505664
Alignment:
Q  161 agttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    |||||||||| || ||||||||||||| |||||| ||||||| ||||||| |||||    
T  41505719 agttctccaatatagcttataaaaacagcttataacatatacgaaaacaatttaac 41505664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 30581823 - 30581774
Alignment:
Q  172 atggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||||||||||| ||||||||||||||| |||||||| ||||| |||||    
T  30581823 atggcttataaaaa-aacttatagcatataaaaaaacaatttaactttatt 30581774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 33186462 - 33186368
Alignment:
Q  37 gggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaatttt 131  Q
    ||||||||||||| |  |||||||||| ||| |  |||||||||||||||||| ||||| | || ||| |||||||||  | ||| |||||||||    
T  33186462 gggcctgtttggattggcttatttgagtttatccgttggcataagttttgtgagactgtctaggagaacttatgaaaactggttatgacaatttt 33186368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 1358288 - 1358317
Alignment:
Q  1 tttgcttatatttagaaacggagggagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  1358288 tttgcttatatttagaaacggagggagtat 1358317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 24023389 - 24023360
Alignment:
Q  1 tttgcttatatttagaaacggagggagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  24023389 tttgcttatatttagaaacggagggagtat 24023360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 33186285 - 33186256
Alignment:
Q  175 gcttataaaaacaacttatagcatatacaa 204  Q
    ||||||||||||||||||||||||||||||    
T  33186285 gcttataaaaacaacttatagcatatacaa 33186256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 36514606 - 36514679
Alignment:
Q  53 acttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagaca 126  Q
    ||||||||||| ||| ||| || |||||||||| ||| |||||| ||| ||| ||||||||||| |||| ||||    
T  36514606 acttatttgagtttatctactgccataagttttttgagactgttagggagaacttatgaaaataacttatgaca 36514679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 37517223 - 37517292
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||| |||||||| || || |||||| |||| ||||||||  |||||||||||||| ||||| |||||    
T  37517223 ttttcaggagttctctaatatagcttattaaaataacttataatatatacaaaaacaatttaactttatt 37517292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 37769685 - 37769758
Alignment:
Q  149 cttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    ||||||||||| | |||| ||| |  ||||||||||||||||| ||||||| ||||||| || ||||| |||||    
T  37769685 cttgttttcataaattctgcaagacagcttataaaaacaacttgtagcataaacaaaaataatttaactttatt 37769758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 12287250 - 12287278
Alignment:
Q  182 aaaacaacttatagcatatacaaaaacaa 210  Q
    |||||||||||||||||||||||||||||    
T  12287250 aaaacaacttatagcatatacaaaaacaa 12287278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16426932 - 16426904
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  16426932 tttgcttatatttagaaacggagggagta 16426904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 27970354 - 27970386
Alignment:
Q  183 aaacaacttatagcatatacaaaaacaaattaa 215  Q
    |||||||||||||||||||||||||||| ||||    
T  27970354 aaacaacttatagcatatacaaaaacaatttaa 27970386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 30192015 - 30191963
Alignment:
Q  171 catggcttataaaaacaacttatagcatataca-aaaacaaattaacattatt 222  Q
    ||||||||||||||||| |||||||||||| || |||| |||||||| |||||    
T  30192015 catggcttataaaaacagcttatagcatatgcacaaaataaattaactttatt 30191963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 30286556 - 30286612
Alignment:
Q  161 agttctccaacatggcttataaaaacaacttatagc-atatacaaaaacaaattaac 216  Q
    |||||| ||| || |||||||||||||||||||||| | |||||||||||| |||||    
T  30286556 agttcttcaaaatagcttataaaaacaacttatagcaacatacaaaaacaatttaac 30286612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 33546504 - 33546536
Alignment:
Q  175 gcttataaaaacaacttatagcatatacaaaaa 207  Q
    |||||||||||||||||| ||||||||||||||    
T  33546504 gcttataaaaacaacttagagcatatacaaaaa 33546536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 34795359 - 34795443
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagctt 120  Q
    |||||||||||||| |   |||||||||||   ||| |||||||| ||||| || |||||||||| ||| ||||||||| |||||    
T  34795359 agggcctgtttggattgggttatttgagctagcctactggcataaattttgcgagactgtttgggagaacttatgaaaacagctt 34795443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 37255242 - 37255270
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  37255242 tttgcttatatttagaaacggagggagta 37255270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 40094444 - 40094472
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  40094444 tttgcttatatttagaaacggagggagta 40094472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 47912596 - 47912568
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  47912596 tttgcttatatttagaaacggagggagta 47912568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 50075758 - 50075730
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  50075758 tttgcttatatttagaaacggagggagta 50075730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 216
Target Start/End: Original strand, 19302480 - 19302651
Alignment:
Q  40 cctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataactt 139  Q
    |||||||| | | ||||||||||||||| ||| || |||||||||||||| | | |||||| ||||||||||||| |||||| ||||||||||||||  |    
T  19302480 cctgtttgaattgacttatttgagcttatctactgacataagttttgtgagaatatttgggagaatttatgaaaacagcttatgacaattttcataaact 19302579  T
Q  140 ttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    |||| |  |||| ||||||| ||||||     || |||||||||||||||||||| ||||||||||||||| |||||    
T  19302580 tttt-tcaacttattttcataagttct----tatagcttataaaaacaacttataacatatacaaaaacaatttaac 19302651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 215
Target Start/End: Original strand, 19022524 - 19022676
Alignment:
Q  62 agcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatga 161  Q
    |||||| ||| || ||| |||||||||| | |||||||| ||||||||||||| | |||| |||||||||||||| || | | |  |||| ||||||| |    
T  19022524 agcttatctactgacatgagttttgtgagattgtttgggagaatttatgaaaacaacttatgacaattttcataagttgtct-tcaacttattttcataa 19022622  T
Q  162 gttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaa 215  Q
    ||||||||| || |||||||||||||||||||||||| ||  ||||||| ||||    
T  19022623 gttctccaatatagcttataaaaacaacttatagcatttattaaaacaatttaa 19022676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 222
Target Start/End: Original strand, 33601342 - 33601507
Alignment:
Q  55 ttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgtt 154  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||  | ||| ||||||||| |||||| |||| |||||||||  ||||| |   |||       
T  33601342 ttatttgagcttatctattggcataagttttgtgagactcttttcgagaacttatgaaaacagcttatgacacttttcataagcttttt-tcagcttaaa 33601440  T
Q  155 ttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    ||||| ||||||| || || |||||| |||||||||||||||| ||||||||| || ||||| |||||    
T  33601441 ttcataagttctctaagatagcttat-aaaacaacttatagcaaatacaaaaataatttaactttatt 33601507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 216
Target Start/End: Complemental strand, 48470201 - 48470022
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcata 135  Q
    |||||||||| ||| |  |||||||||||||| |||| | |||||||||| ||| | |||||||| ||| ||||||||| |||||| | || ||||||||    
T  48470201 agggcctgttaggattggcttatttgagcttatctatagacataagttttatgagattgtttgggagaacttatgaaaacagcttatggcatttttcata 48470102  T
Q  136 acttttttattga-cttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    |  ||||  |||| ||| | ||||| |||| | ||| || |||||| |||||||||||||  |||||||||||||| |||||    
T  48470101 agctttt--ttgagcttatgttcataagttattcaaaatagcttatgaaaacaacttatattatatacaaaaacaatttaac 48470022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 210
Target Start/End: Complemental strand, 34744164 - 34744012
Alignment:
Q  57 atttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgtttt 156  Q
    ||||||||||| ||| |  |||||| ||||||| |||||||||  ||| | ||||||| | |||| ||||||||||| ||  ||||| | | ||| ||||    
T  34744164 atttgagcttatctactaacataagatttgtgagactgtttggaagaactaatgaaaagaacttatgacaattttcacaagcttttt-tcgccttatttt 34744066  T
Q  157 catgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaa 210  Q
     || |||||||||| || |||||| ||||||||||||| |||||||||||||||    
T  34744065 tataagttctccaatatagcttatgaaaacaacttataccatatacaaaaacaa 34744012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 11619089 - 11619239
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgt 153  Q
    |||||||||||||| ||| || |||||| ||  ||| || | ||||| ||||||||||||| | |||| ||||||||||||||  ||||| |  ||||      
T  11619089 cttatttgagcttatctactgacataagcttcatgaaacagattgggagaatttatgaaaacaacttatgacaattttcataagcttttt-tcaacttaa 11619187  T
Q  154 tttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaa 205  Q
    |||||| ||||||||||| | |||||||||||||| | ||||||||| ||||    
T  11619188 tttcataagttctccaacgtagcttataaaaacaattgatagcatattcaaa 11619239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 27863656 - 27863806
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgt 153  Q
    |||||||||||||| | | ||||||||||||||||| ||| |||| | ||| ||||||||| ||||| ||| |||||||| ||  ||||| |   ||| |    
T  27863656 cttatttgagcttatccactggcataagttttgtgagactatttgagagaacttatgaaaacagcttgagaaaattttcaaaaacttttt-tcagcttat 27863754  T
Q  154 tttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaa 205  Q
     ||||| ||||||| || || | |||| ||||||||||||||||||||||||    
T  27863755 gttcataagttctctaatatagtttattaaaacaacttatagcatatacaaa 27863806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 36517736 - 36517650
Alignment:
Q  34 ttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagctt 120  Q
    |||||||||||||||| ||| ||||||||||||| ||| ||||||||||||| | | |||||||||| ||| |||| |||| |||||    
T  36517736 ttagggcctgtttggattcatttatttgagcttagctactggcataagttttctaagactgtttgggagaacttattaaaacagctt 36517650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 46280301 - 46280363
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaa 215  Q
    ||||||| |||||||||| || ||||||||||||| |||||||||||||||||||||| ||||    
T  46280301 ttttcataagttctccaatatagcttataaaaacagcttatagcatatacaaaaacaatttaa 46280363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 222
Target Start/End: Complemental strand, 420495 - 420332
Alignment:
Q  58 tttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa--cttttttattgacttgttt 155  Q
    |||||||||  ||| |||| |||| ||||||| |||||||||| ||| ||||||||| |  ||| |||| |||||  ||  |||||| |   |||| |||    
T  420495 tttgagcttgtctactggcttaagctttgtgagactgtttgggagaacttatgaaaacaatttatgacagttttctaaagcctttttca---acttattt 420399  T
Q  156 tcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||| |||||||||| || |||||   |||||||||||||||||||||||||||| | |||||||||    
T  420398 tcataagttctccaatatagcttacggaaacaacttatagcatatacaaaaacaattgaacattatt 420332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 20526597 - 20526418
Alignment:
Q  42 tgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataactttt 141  Q
    |||||||| | ||||||||||| ||| ||||||| | || |||||||| |||||||| | ||| ||||||||| || |||  ||| ||||| |||  | |    
T  20526597 tgtttggattgacttatttgagtttatctattggtagaaattttgtgagactgtttgagagaacttatgaaaacagtttatcacatttttcgtaagctgt 20526498  T
Q  142 ttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    || ||  ||| ||||||| |||||||||| || |||||| |||||| |||||||||| |||||| | || ||||| |||||    
T  20526497 tt-ttagcttattttcattagttctccaaaatagcttatgaaaacagcttatagcatgtacaaacataatttaactttatt 20526418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 4970707 - 4970802
Alignment:
Q  38 ggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttca 133  Q
    |||||||||||| | ||||||||||||||| ||  || ||||||| |||||| |||||||||| ||| ||||||||| | |||| | |||||||||    
T  4970707 ggcctgtttggattgacttatttgagcttatctcgtgacataagtcttgtgagactgtttgggagaacttatgaaaacaacttatggcaattttca 4970802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 5947396 - 5947299
Alignment:
Q  38 ggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcata 135  Q
    |||||||||||| |  |||||||||||||| ||||||| ||||||||| ||| |||||||||  ||| || |||||  |||||| |||| ||||||||    
T  5947396 ggcctgtttggattggcttatttgagcttatctattggtataagttttatgagactgtttggaagaacttttgaaaccagcttatgacatttttcata 5947299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 17944257 - 17944441
Alignment:
Q  37 gggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    ||||||||||||| | |||||||| |||||| ||| ||||||||| ||||||| |||||||  |  || |||| |||| |||||| |||| ||||||||     
T  17944257 gggcctgtttggagtgacttatttaagcttatctactggcataagctttgtgagactgtttcagacaacttataaaaacagcttatgacacttttcatat 17944356  T
Q  137 cttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
      ||||| |   |||  |||||| | || ||||| ||  ||||| ||||||||||| | ||||||||||||||| ||||| |||||    
T  17944357 gcttttt-tcagcttaatttcataaattatccaagataacttatgaaaacaacttacaacatatacaaaaacaatttaactttatt 17944441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 38138403 - 38138480
Alignment:
Q  34 ttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatga 111  Q
    |||||||||||||||||| ||||||||||||||| ||||||| |||| || ||||| ||||  || | ||||||||||    
T  38138403 ttagggcctgtttggaatgacttatttgagcttatctattggaataaattctgtgagactgagtgagagaatttatga 38138480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 18765422 - 18765366
Alignment:
Q  55 ttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatga 111  Q
    ||||||||||||| |||||| |||||||||||||| |||||||||| ||| ||||||    
T  18765422 ttatttgagcttatctattgacataagttttgtgagactgtttgggagaacttatga 18765366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 48140363 - 48140276
Alignment:
Q  32 acttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagctt 120  Q
    |||||||||||||||||| |  |||||  ||| ||| ||||||||||||||| ||||| |||||||||| |||| |||||||| |||||    
T  48140363 acttagggcctgtttggattggcttata-gagtttatctattggcataagttatgtgagactgtttgggagaatgtatgaaaacagctt 48140276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 19214358 - 19214476
Alignment:
Q  75 gcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatg 174  Q
    ||||||||||||||| | |||||||| ||| ||||||||| |||  | ||||||||||||||  || || |  |||| ||||||| |||||| ||| ||     
T  19214358 gcataagttttgtgagattgtttgggagaacttatgaaaacagcaaatgacaattttcataaacttgtt-tcaacttattttcataagttctacaatata 19214456  T
Q  175 gcttataaaaacaacttata 194  Q
    ||||||| ||||||||||||    
T  19214457 gcttatacaaacaacttata 19214476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 215
Target Start/End: Original strand, 43694522 - 43694661
Alignment:
Q  77 ataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattga-cttgttttcatgagttctccaacatgg 175  Q
    |||||||||  || |||||||||| |||  | ||||||||| ||| |||||| |||| |  |||||| ||   ||| ||||||| |||||| | | || |    
T  43694522 ataagttttacgagactgtttgggagaacctgtgaaaatagtttatgacaatattcacacttttttttttttgcttattttcataagttcttcgatatag 43694621  T
Q  176 cttataaaaacaacttatagcatatacaaaaacaaattaa 215  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  43694622 cttataaaaacagcttatagcatatacaaaaacaatttaa 43694661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 45338494 - 45338428
Alignment:
Q  148 acttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaa 215  Q
    |||| ||||||| |||||||||| || ||||| |||||||||||| ||||||||||||||||| ||||    
T  45338494 acttattttcatcagttctccaatatagctta-aaaaacaacttacagcatatacaaaaacaatttaa 45338428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 4970822 - 4970879
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaa 210  Q
    ||||||| ||||||| || ||  |||||||||| ||||||||||||||||||||||||    
T  4970822 ttttcataagttctctaatatatcttataaaaagaacttatagcatatacaaaaacaa 4970879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 21196406 - 21196271
Alignment:
Q  55 ttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgtt 154  Q
    |||||||||||||  || | ||||||||||||||| ||||||| |  ||||||||| ||| ||| || |||||||||||||   ||||| || |||| ||    
T  21196406 ttatttgagcttatatactagcataagttttgtgagactgtttagaagaatttatgcaaacagc-tatgacaattttcatatgcttttt-ttaacttatt 21196309  T
Q  155 ttcatgagttctccaacatggcttataaaaacaactta 192  Q
    ||| | |||||| ||| |  ||||||||||||||||||    
T  21196308 ttcttaagttctgcaataaagcttataaaaacaactta 21196271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 216
Target Start/End: Original strand, 45790360 - 45790517
Alignment:
Q  53 acttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa-cttttttattgactt 151  Q
    ||||||||||  ||| |||||| |||||||||| |||    |||| || ||| ||||||||||| |||| ||||||||| | || |||||| |    |||    
T  45790360 acttatttgaatttatctattgacataagttttatga----gtttcggagaacttatgaaaataacttatgacaatttttaaaagctttttcag---ctt 45790452  T
Q  152 gttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
     ||||||| |||| ||||| || | |||||||||||||||||||| |||| | ||||||||||||    
T  45790453 attttcataagttatccaatatagtttataaaaacaacttatagcttataaataaacaaattaac 45790517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 14696338 - 14696458
Alignment:
Q  75 gcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaatttt-cataacttttttattgacttgttttcatgagttctccaacat 173  Q
    ||||||||||| ||||||| |||||| |||||| |   ||||||||| |||| |||| |||||| ||||| || |  |  |||||| |||| ||||||||    
T  14696338 gcataagttttatgacactatttgggagaatttttattaatagcttatgacattttttcataaccttttttttcagcttatttcataagttgtccaacat 14696437  T
Q  174 ggcttataaaaacaacttata 194  Q
     |||||| |||||||||||||    
T  14696438 agcttatgaaaacaacttata 14696458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 33266405 - 33266477
Alignment:
Q  42 tgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaa 114  Q
    |||||||| | ||||||||||||||| |||  | |||||||||||||| ||| |||||| ||||||| |||||    
T  33266405 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaactatttgggagaatttacgaaaa 33266477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 209
Target Start/End: Complemental strand, 49020028 - 49019853
Alignment:
Q  34 ttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatg-aaaatagcttaagacaattttc 132  Q
    |||||||  ||||||| | |||||||  |||||| ||  || |||| ||||||||| |||||||||| ||| || || |||| |||||| || |||||||    
T  49020028 ttagggctagtttggattgacttattgtagcttatctgctgacatatgttttgtgagactgtttgggagaacttgtggaaaaaagcttatgaaaattttc 49019929  T
Q  133 ataacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaaca 209  Q
    | ||  ||||| | |  || ||||||| |||||| ||| ||  |||||||||| | |||||||||||||||||||||    
T  49019928 acaatcttttt-tcggtttattttcataagttctacaatataacttataaaaatagcttatagcatatacaaaaaca 49019853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 30570917 - 30571029
Alignment:
Q  109 tgaaaatagcttaagacaattttcataa-cttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaa 207  Q
    |||||| |||||| |||||||||||||| |||||||  ||  ||  |||||| ||||||||||  | | ||||||||| | |||||||||||||||||||    
T  30570917 tgaaaacagcttatgacaattttcataagcttttttcatg--ttaatttcataagttctccaatgtaggttataaaaatagcttatagcatatacaaaaa 30571014  T
Q  208 caaattaacattatt 222  Q
     || ||||| |||||    
T  30571015 taatttaactttatt 30571029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 119928 - 119882
Alignment:
Q  176 cttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    ||||||||||||||||||||||| |||| |||||| ||||| |||||    
T  119928 cttataaaaacaacttatagcatttacacaaacaatttaactttatt 119882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 21568454 - 21568508
Alignment:
Q  82 ttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    |||||||| |||||||||| ||| ||||||||| ||||||  |||||||||||||    
T  21568454 ttttgtgagactgtttgggagaacttatgaaaacagcttataacaattttcataa 21568508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 38138503 - 38138561
Alignment:
Q  148 acttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaa 206  Q
    |||| ||||||| |||||  ||| || ||| ||||||||||||||||||||||||||||    
T  38138503 acttattttcataagttcgtcaatatagctaataaaaacaacttatagcatatacaaaa 38138561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 3836614 - 3836687
Alignment:
Q  54 cttatttgagcttaactattggcataagtt-ttgtgacactgtttgggggaatttatgaaaatagcttaagaca 126  Q
    |||||||||||||| ||| |||| ||||   |||||| |||||||||| ||| |||||||||||||||| ||||    
T  3836614 cttatttgagcttatctactggcttaagcacttgtgaaactgtttgggagaacttatgaaaatagcttatgaca 3836687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 7345014 - 7345043
Alignment:
Q  1 tttgcttatatttagaaacggagggagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  7345014 tttgcttatatttagaaacggagggagtat 7345043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 14206446 - 14206475
Alignment:
Q  1 tttgcttatatttagaaacggagggagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  14206446 tttgcttatatttagaaacggagggagtat 14206475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 14215136 - 14215165
Alignment:
Q  1 tttgcttatatttagaaacggagggagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  14215136 tttgcttatatttagaaacggagggagtat 14215165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 9210970 - 9210906
Alignment:
Q  44 tttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaattta 108  Q
    |||||| | ||||||||||||||| ||| ||  ||||||||| ||| |||||||||| |||||||    
T  9210970 tttggattgacttatttgagcttatctactgatataagttttctgagactgtttgggagaattta 9210906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 20258524 - 20258484
Alignment:
Q  182 aaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    ||||||||||||||||  ||||||||||| |||||||||||    
T  20258524 aaaacaacttatagcaattacaaaaacaatttaacattatt 20258484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 22282469 - 22282497
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  22282469 tttgcttatatttagaaacggagggagta 22282497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 28324744 - 28324716
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  28324744 tttgcttatatttagaaacggagggagta 28324716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 48507744 - 48507700
Alignment:
Q  172 atggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    ||||||||| ||||||  ||||||||||||||||||||| |||||    
T  48507744 atggcttatgaaaacagtttatagcatatacaaaaacaatttaac 48507700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 216
Target Start/End: Original strand, 17822780 - 17822957
Alignment:
Q  38 ggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataac 137  Q
    |||||||||||| | ||||||||||||||| ||| || |||||||| ||||| ||| ||| || |||  |||||||| |||||| |||| |||||||||     
T  17822780 ggcctgtttggattaacttatttgagcttatctactgacataagttctgtgagactatttaggagaacatatgaaaacagcttatgacatttttcataag 17822879  T
Q  138 ttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
     ||||| ||  ||| ||||||| |||||||||| || |||||| |||||||||||||||||||| || ||||| |||||    
T  17822880 cttttt-ttagcttattttcataagttctccaagatagcttatgaaaacaacttatagcatataaaataacaatttaac 17822957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 211
Target Start/End: Original strand, 21731570 - 21731743
Alignment:
Q  37 gggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    ||||||||||||| |   |||||||||| || ||| || |||||||||||||| | |||||||| ||| ||||||||| ||||||  |||||||||||||    
T  21731570 gggcctgtttggattggtttatttgagcatatctactgacataagttttgtgagattgtttgggagaacttatgaaaacagcttatcacaattttcataa 21731669  T
Q  137 cttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaa 211  Q
      ||||| |  ||||  |||||| | |||||||| || ||||||||||||||||||||||| |||||||||||||    
T  21731670 acttttt-tcaacttactttcataaattctccaatatagcttataaaaacaacttatagcacatacaaaaacaaa 21731743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 201
Target Start/End: Complemental strand, 54426197 - 54426036
Alignment:
Q  39 gcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataact 138  Q
    ||||||||||| |  |||||||||||||| ||| ||||||||||||||||| |||| ||||| ||| ||| ||||| |||||| ||||||||||||||      
T  54426197 gcctgtttggattggcttatttgagcttatctactggcataagttttgtgagactgcttgggagaacttaggaaaacagcttatgacaattttcataagc 54426098  T
Q  139 tttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatata 201  Q
    ||||| |  | || ||||||| |||||||||| || | |||||||||||||||||| ||||||    
T  54426097 ttttt-tcaagttattttcataagttctccaatatagattataaaaacaacttataacatata 54426036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 15173223 - 15173323
Alignment:
Q  43 gtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttt 142  Q
    ||||||| | |||||||||| |||| ||| || |||||||||||||| |||||||||| || ||||||||||||||||| |||||||||||||| |||||    
T  15173223 gtttggattgacttatttgaacttatctactgacataagttttgtgagactgtttgggagactttatgaaaatagcttatgacaattttcataagttttt 15173322  T
Q  143 t 143  Q
    |    
T  15173323 t 15173323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 50681044 - 50681187
Alignment:
Q  78 taagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggct 177  Q
    |||||||||||| |||||||| | ||| ||||||||| || | | ||||||||||||||  ||||| |  | || ||||||| | |||||||| || |||    
T  50681044 taagttttgtgagactgtttgagagaacttatgaaaacagttaatgacaattttcataagcttttt-tcaatttattttcataatttctccaatatagct 50681142  T
Q  178 tataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||| |||||||||||||||||||||||||||| |||||||||||    
T  50681143 tatataaacaacttatagcatatacaaaaacaatttaacattatt 50681187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 54069336 - 54069515
Alignment:
Q  37 gggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    |||||||||||||   |||||||||||||||     || |||||||||||||  |||||||||  | |||| |||||| ||||||  |||||||||||||    
T  54069336 gggcctgtttggatcgacttatttgagctta-----tgacataagttttgtgggactgtttggtaggatttttgaaaacagcttacaacaattttcataa 54069430  T
Q  137 cttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
      | ||| || |||| |||||||  ||||| ||| ||  ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  54069431 gctgttt-ttaacttattttcatatgttcttcaatataacttataaaaacaaattatagcatatacaaaaacaatttaacattatt 54069515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 207
Target Start/End: Original strand, 49940085 - 49940252
Alignment:
Q  41 ctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaa-gacaattttcataactt 139  Q
    ||||||||| | ||||||||||||||| ||  |  |||||||||||||| |||||||| | ||| ||||||||| ||||||| || |||||| | ||  |    
T  49940085 ctgtttggattgacttatttgagcttacctgctaacataagttttgtgagactgtttgagagaacttatgaaaacagcttaaagataattttaacaagct 49940184  T
Q  140 ttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaa 207  Q
    |||||||| ||| ||| | | |||||||| |  | ||||||||||||| |||||||||||||||||||    
T  49940185 ttttattggcttatttccgtaagttctccgatgtagcttataaaaacagcttatagcatatacaaaaa 49940252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 39603102 - 39603238
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgt 153  Q
    |||||||||||||  ||||||| ||||||||||||| |||||||||| ||| ||| ||||| |||||| ||||||||| ||||  ||||| || | || |    
T  39603102 cttatttgagcttt-ctattggtataagttttgtgagactgtttgggagaacttaggaaaacagcttatgacaatttttataagcttttt-ttaagttat 39603199  T
Q  154 tttcatgagttctccaacatggcttataaaaacaactta 192  Q
    |||||| |||||||||| ||  |||||||||||||||||    
T  39603200 tttcataagttctccaatataccttataaaaacaactta 39603238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 222
Target Start/End: Original strand, 55414326 - 55414518
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaat-------agcttaagacaat 128  Q
    |||||||||||||| | |||||||||||  || ||| |||||||| ||||||||  |||||| || |||||||||||||        |||||| |||| |    
T  55414326 agggcctgtttggattgacttatttgagagtatctactggcataatttttgtgatgctgtttaggagaatttatgaaaagtgaaaacagcttatgacatt 55414425  T
Q  129 tttcataacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    ||||||||  ||||| |  |||| ||||||| |||||||||| ||  ||||| ||||||| ||||||||||| |||||| |||||||| |||||    
T  55414426 tttcataagcttttt-tcaacttattttcataagttctccaagataacttatgaaaacaatttatagcatatgcaaaaaaaaattaactttatt 55414518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 222
Target Start/End: Original strand, 27043743 - 27043928
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcata 135  Q
    |||| ||||||||| | ||||||||||||||| ||| || |||||||||||||| |||||||||  ||| ||||| |||||||||| | ||   | ||||    
T  27043743 agggtctgtttggattgacttatttgagcttatctactgacataagttttgtgaaactgtttggaagaagttatgcaaatagcttatggcatcgtccata 27043842  T
Q  136 acttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    | || ||| ||  ||| | |||||  ||||||||| || | ||||||||||| |||||||| ||||| ||||||| ||||| |||||    
T  27043843 aattgttt-ttagcttatattcatacgttctccaagatagtttataaaaacatcttatagcttatacgaaaacaatttaactttatt 27043928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 2244168 - 2244032
Alignment:
Q  76 cataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatgg 175  Q
    |||||||||| ||| |||||||||| |||||| | |||| |||||| |||||| |||||||  ||||| |   ||| ||||||| |||||||||| || |    
T  2244168 cataagttttttgaaactgtttgggagaatttttaaaaacagcttatgacaatattcataaacttttt-tcaccttattttcataagttctccaatatag 2244070  T
Q  176 cttata--aaaacaacttatagcat-atacaaaaacaa 210  Q
    ||||||  ||||||||||||||||| ||||||||||||    
T  2244069 cttatattaaaacaacttatagcataatacaaaaacaa 2244032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 216
Target Start/End: Complemental strand, 44798037 - 44797864
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcata 135  Q
    |||||||||||||| |  || |||| |||||| ||| || |||||||||||||| ||||||||||       ||||||| ||| || |||| ||||||||    
T  44798037 agggcctgtttggattggctgatttaagcttatctactgacataagttttgtgagactgtttggg-------atgaaaacagcgtatgacatttttcata 44797945  T
Q  136 acttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    | |||||| || |||| | || || || ||||||| |  |||||||||||||||||||||| || |||||| ||| |||||    
T  44797944 agtttttttttaacttatctttataagctctccaatacagcttataaaaacaacttatagcgtacacaaaatcaatttaac 44797864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 53294139 - 53294205
Alignment:
Q  149 cttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaa 215  Q
    ||||||||||| ||||||| || || | |||||||||||||||||||||||||||||||||| ||||    
T  53294139 cttgttttcataagttctctaatatagtttataaaaacaacttatagcatatacaaaaacaatttaa 53294205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 39691064 - 39691241
Alignment:
Q  38 ggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataac 137  Q
    |||||||||| | | ||||||||||||||| ||| | ||||||||||||||| |||||||| | |||||||||  || ||||||      |||   |||     
T  39691064 ggcctgtttgaattgacttatttgagcttatctactagcataagttttgtgagactgtttgagagaatttatgggaacagctta------tttatctaag 39691157  T
Q  138 ttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||| |  |||| ||||| | |||||| ||| || ||||||||||||||||||||||||||||||||  |  |||||||||||    
T  39691158 tttttt-tcaacttattttcgtaagttcttcaatatagcttataaaaacaacttatagcatatacaaaacaattttaacattatt 39691241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 22030343 - 22030263
Alignment:
Q  53 acttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttca 133  Q
    ||||||||||||||  ||||| |||||||||||||||  || |||||| ||| ||||||||| |||||| |||||||||||    
T  22030343 acttatttgagcttgtctattagcataagttttgtgagcctatttgggagaacttatgaaaacagcttatgacaattttca 22030263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 42403936 - 42404035
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcata 135  Q
    |||||||||||||| | ||||||||||||||| | | || |||||||||||||   || |||||| |||||| |||||| |||||| |||||||||||||    
T  42403936 agggcctgtttggattgacttatttgagcttatcaactgacataagttttgtg-tgctatttgggagaatttctgaaaacagcttatgacaattttcata 42404034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 210
Target Start/End: Original strand, 7839341 - 7839447
Alignment:
Q  103 aatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatac 202  Q
    |||||||||||| | |||| ||||||||||||||  ||||| |  |||| ||||| | |||||| |||  | |||||||||||||| |||||||||||||    
T  7839341 aatttatgaaaacaacttatgacaattttcataagcttttt-tcaacttattttcgtaagttcttcaatctagcttataaaaacaatttatagcatatac 7839439  T
Q  203 aaaaacaa 210  Q
    ||||||||    
T  7839440 aaaaacaa 7839447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 9760481 - 9760412
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    ||||||| |||||||||| || ||||||||||||||||||||||||||  ||||| || ||||| |||||    
T  9760481 ttttcataagttctccaatatagcttataaaaacaacttatagcatattaaaaaagaatttaactttatt 9760412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 18815180 - 18815118
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttg 98  Q
    |||||||||||||| |  |||||||||||||| ||| | ||||||||||||||| ||||||||    
T  18815180 agggcctgtttggattggcttatttgagcttacctactagcataagttttgtgagactgtttg 18815118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 42404046 - 42404096
Alignment:
Q  172 atggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||||||||||||| |||| ||||| ||||||||||| |||||||||||    
T  42404046 atggcttataaaaacagcttacagcatgtacaaaaacaatttaacattatt 42404096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 26780 - 26925
Alignment:
Q  38 ggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa- 136  Q
    |||||||||||| |  |||||||||||||| | | ||||||||| ||||| | |||||||  | ||| ||||||||| |||||| ||||| ||||| ||     
T  26780 ggcctgtttggattggcttatttgagcttatcaactggcataagctttgttagactgtttccgagaaattatgaaaacagcttatgacaaatttcacaag 26879  T
Q  137 cttttttattgacttgttttcatgagttctccaacatggcttataaaaa 185  Q
    |||||| |  || || ||||||| |||||||||| || |||||||||||    
T  26880 ctttttca--ga-ttattttcataagttctccaatatagcttataaaaa 26925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 201
Target Start/End: Complemental strand, 24169420 - 24169256
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcata 135  Q
    ||||| |||||||| |  |||||| ||| ||| ||| ||||||||||||||||| ||| |||| | ||| || | ||||||||||| |||| ||||||||    
T  24169420 agggcttgtttggattggcttattagagtttatctactggcataagttttgtgagactatttgagagaacttttaaaaatagcttatgacatttttcata 24169321  T
Q  136 acttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatata 201  Q
    |  ||||| |  |||| ||||||| || ||||||| || |||| | ||||||  ||||||| ||||    
T  24169320 agattttt-tcaacttattttcataagctctccaagatagcttgtgaaaacattttatagcctata 24169256  T

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Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 33586951 - 33587039
Alignment:
Q  119 ttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaac 208  Q
    |||||||||| |||||||  ||||  || |||| ||||||| |||||||| | || ||||||||||||||| |||| |||||||||||||    
T  33586951 ttaagacaatattcataagcttttc-ttaacttattttcataagttctccgatatagcttataaaaacaacctataacatatacaaaaac 33587039  T

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Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 16200010 - 16200066
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaaca 209  Q
    ||||||| ||| |||||| || |||||| |||||| |||||||||||||||||||||    
T  16200010 ttttcataagtcctccaagatagcttatgaaaacagcttatagcatatacaaaaaca 16200066  T

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Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 21523674 - 21523614
Alignment:
Q  76 cataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    ||||| ||||||||||||||||||  ||||||||||||| | |||| |||| |||||||||    
T  21523674 cataaattttgtgacactgtttggaagaatttatgaaaacaacttatgacatttttcataa 21523614  T

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Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 25904153 - 25904236
Alignment:
Q  53 acttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    ||||||||||||||| | | || ||||| |||||||| |||||||||| ||  ||||||||| |||||| | || |||||||||    
T  25904153 acttatttgagcttatccaatgacataaattttgtgagactgtttgggagagcttatgaaaacagcttatgccatttttcataa 25904236  T

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Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 31076437 - 31076471
Alignment:
Q  175 gcttataaaaacaacttatagcatatacaaaaaca 209  Q
    |||||||||||||| ||||||||||||||||||||    
T  31076437 gcttataaaaacaatttatagcatatacaaaaaca 31076471  T

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Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 50662721 - 50662818
Alignment:
Q  106 ttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaa 204  Q
    ||||||||| || | | ||||||||||||||  ||||| |  |||| ||||||  | |||||||| || ||||||| ||||||||||||||||||||||    
T  50662721 ttatgaaaacagttaatgacaattttcataagcttttt-tcaacttattttcacaatttctccaatatagcttatataaacaacttatagcatatacaa 50662818  T

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Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 6979010 - 6979039
Alignment:
Q  172 atggcttataaaaacaacttatagcatata 201  Q
    ||||||||||||||||||||||||||||||    
T  6979010 atggcttataaaaacaacttatagcatata 6979039  T

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Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 8705077 - 8705020
Alignment:
Q  57 atttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaa 114  Q
    ||||||||||| |||||| |||||||||||||| |||| ||||| ||| |||| ||||    
T  8705077 atttgagcttatctattgacataagttttgtgagactgattgggagaacttataaaaa 8705020  T

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Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 17884109 - 17884040
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    ||||||| || ||||||| || |||||| ||||||||| ||| | ||||||||||||| ||||| |||||    
T  17884109 ttttcataagctctccaatatagcttatgaaaacaactgataacttatacaaaaacaatttaactttatt 17884040  T

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Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 33811259 - 33811288
Alignment:
Q  1 tttgcttatatttagaaacggagggagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  33811259 tttgcttatatttagaaacggagggagtat 33811288  T

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Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 35967497 - 35967526
Alignment:
Q  1 tttgcttatatttagaaacggagggagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  35967497 tttgcttatatttagaaacggagggagtat 35967526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 46588042 - 46588157
Alignment:
Q  92 ctgtttgggggaatttatgaaaatagcttaagacaattttcataa--cttttttattgacttgttttcatgagttctccaacatggcttataaaa-acaa 188  Q
    ||||||||  ||| ||| ||||||| |||| ||||||||||||||  |||||  |   |||| ||||||| |||||||||| ||  ||||||||| ||||    
T  46588042 ctgtttggtagaacttacgaaaataacttatgacaattttcataagccttttcca---acttattttcataagttctccaatataacttataaaaaacaa 46588138  T
Q  189 cttatagcatatacaaaaa 207  Q
    ||||||||||||| |||||    
T  46588139 cttatagcatatataaaaa 46588157  T

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Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 53508524 - 53508495
Alignment:
Q  1 tttgcttatatttagaaacggagggagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  53508524 tttgcttatatttagaaacggagggagtat 53508495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 53551711 - 53551740
Alignment:
Q  1 tttgcttatatttagaaacggagggagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  53551711 tttgcttatatttagaaacggagggagtat 53551740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 54581065 - 54581102
Alignment:
Q  35 tagggcctgtttggaatcacttatttgagcttaactat 72  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  54581065 tagggcctgtttggattgacttatttgagcttaactat 54581102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 2465972 - 2466008
Alignment:
Q  177 ttataaaaacaacttatagcatatacaaaaacaaatt 213  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  2465972 ttatgaaaacaacttatagcttatacaaaaacaaatt 2466008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 20109027 - 20108987
Alignment:
Q  176 cttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    |||||||||||| |||||| ||||||||||||||| |||||    
T  20109027 cttataaaaacagcttataccatatacaaaaacaacttaac 20108987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 22662150 - 22662090
Alignment:
Q  53 acttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaa 113  Q
    |||||| |||||||| ||| || | ||||||| |||| |||||||||||||| ||||||||    
T  22662150 acttatctgagcttatctactgacgtaagtttagtgagactgtttgggggaacttatgaaa 22662090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 22666629 - 22666569
Alignment:
Q  53 acttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaa 113  Q
    |||||| |||||||| ||| || | ||||||| |||| |||||||||||||| ||||||||    
T  22666629 acttatctgagcttatctactgacgtaagtttagtgagactgtttgggggaacttatgaaa 22666569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 29913064 - 29913020
Alignment:
Q  76 cataagttttgtgacactgtttgggggaatttatgaaaatagctt 120  Q
    ||||||||||| || |||||||||| ||| |||||||||||||||    
T  29913064 cataagttttgcgaaactgtttgggagaacttatgaaaatagctt 29913020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 30016884 - 30016856
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  30016884 tttgcttatatttagaaacggagggagta 30016856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 34166136 - 34166108
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  34166136 tttgcttatatttagaaacggagggagta 34166108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 42121521 - 42121469
Alignment:
Q  161 agttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaatt 213  Q
    |||||||||| || ||| || ||||||||||||||| |||||| |||||||||    
T  42121521 agttctccaagatagctcatgaaaacaacttatagcttatacagaaacaaatt 42121469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 49003963 - 49004035
Alignment:
Q  44 tttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaata 116  Q
    ||||||||  |||||||||||||| ||| | || |||||||||||| ||| |||| | ||| |||||||||||    
T  49003963 tttggaattgcttatttgagcttatctactagcttaagttttgtgagactatttgagagaacttatgaaaata 49004035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 50038474 - 50038446
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  50038474 tttgcttatatttagaaacggagggagta 50038446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 50045696 - 50045668
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  50045696 tttgcttatatttagaaacggagggagta 50045668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 56420547 - 56420575
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  56420547 tttgcttatatttagaaacggagggagta 56420575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 222
Target Start/End: Complemental strand, 32592723 - 32592559
Alignment:
Q  56 tatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttt 155  Q
    ||||| |||||| ||  |||||||||||||| ||  || |||||| ||| |||||||||||||||| ||||||||||||||  ||||  |  |||| |||    
T  32592723 tatttaagcttatctgatggcataagttttgggagtctatttgggagaacttatgaaaatagcttacgacaattttcataagcttttc-tcaacttattt 32592625  T
Q  156 tcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||| |||||||||| || |||||||||||||||||||||| ||||| ||||||| |||||||||||    
T  32592624 tcataagttctccaatattgcttataaaaacaacttatagcgtatac-aaaacaatttaacattatt 32592559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 43279466 - 43279625
Alignment:
Q  62 agcttaactattggcataagttttgtgacactgtttggggga--atttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcat 159  Q
    |||||| ||| | ||||||||||||||| |||||||||| ||  ||||||||||| |||||| ||||||||||||||  ||||| |  |||| ||||||     
T  43279466 agcttatctactagcataagttttgtgagactgtttgggagagaatttatgaaaacagcttatgacaattttcataagcttttt-tcaacttattttcac 43279564  T
Q  160 gagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
     |||||||||| || ||||||||||||||||||||||  |||||||||||| || ||||||||    
T  43279565 aagttctccaatatagcttataaaaacaacttatagc--atacaaaaacaatttcacattatt 43279625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 26202189 - 26202025
Alignment:
Q  32 acttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaatttt 131  Q
    |||||||||||||||||| | |||||||||| |||| ||  || |||||||||||||| | | ||||   |||||||||| || | |||| |||||||||    
T  26202189 acttagggcctgtttggattaacttatttgaacttatctgctgacataagttttgtgagattctttgctagaatttatgagaacaacttatgacaatttt 26202090  T
Q  132 cataacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagca 197  Q
    |||||  ||||| |  |||| ||||||| |||||||||| ||  ||||||||||||||||||||||    
T  26202089 cataagcttttt-tcaacttattttcataagttctccaatatatcttataaaaacaacttatagca 26202025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 170
Target Start/End: Complemental strand, 15305835 - 15305698
Alignment:
Q  32 acttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaatttt 131  Q
    |||||||||||||||||| |  |||||||||||||| |||||| |||||||||||||| |||||||||  ||| || ||| || | |||| | |||||||    
T  15305835 acttagggcctgtttggattggcttatttgagcttatctattgacataagttttgtgaaactgtttggtagaacttttgacaacaacttatggcaatttt 15305736  T
Q  132 cataacttttttattgacttgttttcatgagttctccaa 170  Q
    ||||| |||||| |  |||| ||||||| ||||||||||    
T  15305735 cataagtttttt-tcaacttattttcataagttctccaa 15305698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 207
Target Start/End: Original strand, 15757577 - 15757741
Alignment:
Q  42 tgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataactttt 141  Q
    ||||||||||   |||||||||||||  || ||||||||||||||||| |||| ||||| |||||||||||||  ||||| ||||||||||| ||  |||    
T  15757577 tgtttggaatggtttatttgagcttatttactggcataagttttgtgagactgcttgggagaatttatgaaaactgcttatgacaattttcagaagcttt 15757676  T
Q  142 ttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaa 207  Q
    || |   ||| |||||||  ||||||    || ||||||||| |||||||||||||||||||||||    
T  15757677 tt-tcagcttattttcatacgttctcttgtatagcttataaatacaacttatagcatatacaaaaa 15757741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 223
Target Start/End: Complemental strand, 41851670 - 41851506
Alignment:
Q  58 tttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttc 157  Q
    |||||||||| |||||| || ||||||||||| |||| ||||| ||||||||| ||| | |||| |||| |||||||||  ||||    | |||  ||||    
T  41851670 tttgagcttatctattgacaaaagttttgtgagactgattgggagaatttatggaaacaacttatgacacttttcataagcttttctcag-cttaatttc 41851572  T
Q  158 atgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattattg 223  Q
    || | |||||||| || |||| | ||||||||||||||||||||||||||||| ||||| ||||||    
T  41851571 ataaattctccaagatagcttctgaaaacaacttatagcatatacaaaaacaatttaactttattg 41851506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 207
Target Start/End: Complemental strand, 20952506 - 20952342
Alignment:
Q  42 tgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcat-aacttt 140  Q
    |||||||| | |||||||||||||||  || ||||| ||||||||| | ||| |||  | ||| ||||||||| || ||| | |||||||||| ||||||    
T  20952506 tgtttggattgacttatttgagcttatatactggcaaaagttttgttagactatttaagagaacttatgaaaacagtttatgccaattttcattaacttt 20952407  T
Q  141 tttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaa 207  Q
    |||    |||| ||||||| |||||||||| || ||| ||||||||||||||||||||||| |||||    
T  20952406 tttca--acttattttcataagttctccaatatagctaataaaaacaacttatagcatataaaaaaa 20952342  T

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Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 53 - 215
Target Start/End: Complemental strand, 24101068 - 24100905
Alignment:
Q  53 acttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttg 152  Q
    |||||||||| ||||  ||||  |||||||||||||| |||||||||| ||| ||||| ||| | |||| |||||| |||||||  ||||| |  |||||    
T  24101068 acttatttgaacttatatattatcataagttttgtgagactgtttgggagaacttatggaaacaccttatgacaatattcataagctttttttctacttg 24100969  T
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagca-tatacaaaaacaaattaa 215  Q
    |||| || |||||| ||| || |||||| ||||||| |||||| | ||||||||| ||||||||    
T  24100968 tttttataagttcttcaatatagcttattaaaacaatttatagtattatacaaaatcaaattaa 24100905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 30331910 - 30331811
Alignment:
Q  34 ttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttca 133  Q
    ||||||| |||||||| | |||||||| |||||| ||| || |||||||||||||| |||||||||| ||| ||||||||| | |||| |||||||||||    
T  30331910 ttagggcttgtttggattgacttatttcagcttatctactgacataagttttgtgagactgtttgggagaacttatgaaaaaaccttatgacaattttca 30331811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 42868393 - 42868469
Alignment:
Q  35 tagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatga 111  Q
    ||||||||||||||| |  |||||||||||||| ||||||||||| |||| ||||||||||||||| ||| ||||||    
T  42868393 tagggcctgtttggattgccttatttgagcttatctattggcatacgtttcgtgacactgtttgggagaacttatga 42868469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 39073713 - 39073787
Alignment:
Q  148 acttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||| ||||||  |||||||||| || |||||||||||  ||||||||||||||||||||||| ||||| |||||    
T  39073713 acttattttcactagttctccaatatagcttataaaaattacttatagcatatacaaaaacaatttaacgttatt 39073787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 27317025 - 27317082
Alignment:
Q  41 ctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttg 98  Q
    ||||||||| | |||||||| |||||| ||||||||||||| ||||||||||||||||    
T  27317025 ctgtttggattgacttattttagcttatctattggcataagctttgtgacactgtttg 27317082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 9174970 - 9174910
Alignment:
Q  38 ggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttg 98  Q
    ||||| |||||| | ||||||||||||||| ||||||||||||||| ||||| ||||||||    
T  9174970 ggcctatttggatttacttatttgagcttatctattggcataagttatgtgagactgtttg 9174910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 42659142 - 42659214
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagaca 126  Q
    ||||||||||||||  || ||||||||||||||||| |||||||||| ||| || |||||| |||||| ||||    
T  42659142 cttatttgagcttatttactggcataagttttgtgagactgtttgggagaagttttgaaaacagcttatgaca 42659214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 216
Target Start/End: Complemental strand, 27317533 - 27317358
Alignment:
Q  39 gcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcata-ac 137  Q
    ||||||||||| | ||||||||||||||| |||  | |||||||||| ||| |||||||| | ||| ||||||||| | |||| | |  ||||| || ||    
T  27317533 gcctgtttggattgacttatttgagcttatctaccgacataagttttatgagactgtttgagagaacttatgaaaacaacttatgccctttttcttacac 27317434  T
Q  138 ttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    |||||  ||  ||| || |||  |||  ||||| |||||||||||||||||||||||||| ||| ||||| ||||||||    
T  27317433 ttttt--ttatcttattctcacaagtggtccaaaatggcttataaaaacaacttatagcacata-aaaaaaaaattaac 27317358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 40279238 - 40279175
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    ||||||| ||||||||||||| |||||| ||||||||||||| | ||||| ||||||| |||||    
T  40279238 ttttcataagttctccaacatagcttatgaaaacaacttatatcttataccaaaacaatttaac 40279175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 216
Target Start/End: Complemental strand, 45229647 - 45229490
Alignment:
Q  57 atttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgtttt 156  Q
    ||||||||||| ||| ||||||||||| ||  |||| ||||||| ||| ||||||||| | |||| |||| ||||||| |  ||||| |   ||| ||||    
T  45229647 atttgagcttatctactggcataagttatgccacaccgtttgggagaacttatgaaaagaccttatgacatttttcattagcttttt-tcagcttatttt 45229549  T
Q  157 catgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    ||| ||||||| || || |||||| ||||||| | ||| ||||||||||||||| |||||    
T  45229548 cataagttctcgaagatagcttatgaaaacaa-tgataacatatacaaaaacaatttaac 45229490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 7928206 - 7928271
Alignment:
Q  31 cacttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtt 96  Q
    |||| |||||||||||||| |  |||||||||||||| |||||| |||||||| ||||| ||||||    
T  7928206 cactaagggcctgtttggattggcttatttgagcttatctattgacataagttgtgtgagactgtt 7928271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 12464510 - 12464571
Alignment:
Q  161 agttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||||||| || |||||| |||| | |||||||||||||||||||||| ||||| |||||    
T  12464510 agttctccaagatagcttatgaaaatagcttatagcatatacaaaaacaatttaactttatt 12464571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 27695610 - 27695687
Alignment:
Q  139 tttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    ||||| ||| ||| ||||||  ||||| |||| || ||||||||||||| |||||| |||||||||||||||| ||||    
T  27695610 ttttttttggcttattttcacaagttccccaatatagcttataaaaacagcttatatcatatacaaaaacaaaataac 27695687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 43529788 - 43529857
Alignment:
Q  53 acttatttgagcttaactattggcataagtt-ttgtgacactgtttgggggaatttatgaaaatagctta 121  Q
    ||||||||||||||| ||||||| |||||   || |||||||||||||| ||||||||||||| ||||||    
T  43529788 acttatttgagcttatctattggtataagcacttctgacactgtttgggagaatttatgaaaacagctta 43529857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 39659540 - 39659608
Alignment:
Q  155 ttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattattg 223  Q
    ||||| ||||||| || || |||||||||||||| ||||| |||| |||||||||| ||||| ||||||    
T  39659540 ttcataagttctctaatatagcttataaaaacaagttataacatagacaaaaacaatttaacgttattg 39659608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 40669079 - 40669111
Alignment:
Q  1 tttgcttatatttagaaacggagggagtatcac 33  Q
    |||||||||||||||||||||||||||||||||    
T  40669079 tttgcttatatttagaaacggagggagtatcac 40669111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 449987 - 449904
Alignment:
Q  53 acttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    ||||||||||||||| ||| | ||||||||||| ||| | |||||||| | | || |||||| |||||| |||| |||||||||    
T  449987 acttatttgagcttatctactagcataagttttatgagattgtttgggaggacttttgaaaacagcttatgacatttttcataa 449904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 222
Target Start/End: Complemental strand, 1626038 - 1625872
Alignment:
Q  55 ttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgtt 154  Q
    ||||||||||||| |   || |||||||||||| | ||| |||| | ||| |||||||| ||||||| |||||| |||||||  | |||   | ||  ||    
T  1626038 ttatttgagcttatcccctgacataagttttgtaagactatttgagagaacttatgaaagtagcttatgacaatgttcataagatgttttcag-ctgatt 1625940  T
Q  155 ttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    ||| | |||||||||| || |||||| ||||||||||||| | ||||| ||||||| ||||| |||||    
T  1625939 ttcgtaagttctccaagatagcttatgaaaacaacttataacttatacgaaaacaatttaactttatt 1625872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 15370238 - 15370301
Alignment:
Q  38 ggcctgtttggaatcacttatttgagcttaactattggcataag-ttttgtgacactgtttggg 100  Q
    |||||||||||| | ||||||||||||||| ||| |||||||||  ||||||| ||||||||||    
T  15370238 ggcctgtttggattgacttatttgagcttatctactggcataagcatttgtgagactgtttggg 15370301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 25668527 - 25668558
Alignment:
Q  1 tttgcttatatttagaaacggagggagtatca 32  Q
    ||||||||||||||||||||||||||||||||    
T  25668527 tttgcttatatttagaaacggagggagtatca 25668558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 37486115 - 37486146
Alignment:
Q  1 tttgcttatatttagaaacggagggagtatca 32  Q
    ||||||||||||||||||||||||||||||||    
T  37486115 tttgcttatatttagaaacggagggagtatca 37486146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 42419948 - 42419853
Alignment:
Q  38 ggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttca 133  Q
    ||||| |||||| | ||||||||||| ||| ||  || |||||||||| ||| |||||||||| ||| ||| ||||| |||||| |||| ||||||    
T  42419948 ggcctttttggattgacttatttgagtttatcttctgacataagttttttgagactgtttgggagaacttacgaaaacagcttatgacatttttca 42419853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 4898189 - 4898160
Alignment:
Q  1 tttgcttatatttagaaacggagggagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  4898189 tttgcttatatttagaaacggagggagtat 4898160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 4945583 - 4945554
Alignment:
Q  1 tttgcttatatttagaaacggagggagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  4945583 tttgcttatatttagaaacggagggagtat 4945554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 9157998 - 9157969
Alignment:
Q  1 tttgcttatatttagaaacggagggagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  9157998 tttgcttatatttagaaacggagggagtat 9157969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 11201411 - 11201468
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaa 210  Q
    ||||||| |||||||||| || |  || ||||||||||||||| ||||||||||||||    
T  11201411 ttttcataagttctccaatatagtatacaaaaacaacttatagtatatacaaaaacaa 11201468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 20933796 - 20933727
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    ||||||| |||| ||||| || ||||| |||||||||||| |||||||| | || ||| |||||||||||    
T  20933796 ttttcataagttttccaatatagcttagaaaaacaacttagagcatatatagaagcaatttaacattatt 20933727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 28206300 - 28206243
Alignment:
Q  161 agttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacat 218  Q
    |||||||||| || |||||||||||||| ||||| |||||| ||||| || |||||||    
T  28206300 agttctccaatatagcttataaaaacaatttataacatataaaaaaataatttaacat 28206243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 30202600 - 30202629
Alignment:
Q  1 tttgcttatatttagaaacggagggagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  30202600 tttgcttatatttagaaacggagggagtat 30202629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 3312234 - 3312162
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaattta 108  Q
    ||||| |||||||| |  |||||||||||||| ||| || | |||||||||||| |||||| ||| |||||||    
T  3312234 agggcttgtttggattggcttatttgagcttatctactgacgtaagttttgtgagactgttggggagaattta 3312162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 10099576 - 10099548
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  10099576 tttgcttatatttagaaacggagggagta 10099548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 28810365 - 28810409
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataa 80  Q
    |||||||||||||| | ||||||||||||||  ||||||||||||    
T  28810365 agggcctgtttggattgacttatttgagcttctctattggcataa 28810409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 31744453 - 31744365
Alignment:
Q  38 ggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagaca 126  Q
    |||||||||||| |  |||||||| ||||| |||  | |||||||||| ||| |||||||| | ||| || |||||| |||||||||||    
T  31744453 ggcctgtttggattggcttatttgggcttatctaccgacataagttttctgagactgtttgagagaacttttgaaaacagcttaagaca 31744365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 44949366 - 44949338
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  44949366 tttgcttatatttagaaacggagggagta 44949338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 223
Target Start/End: Complemental strand, 39980888 - 39980700
Alignment:
Q  34 ttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttca 133  Q
    |||||| ||||||||| |  ||| |||||||||| ||| | ||||||||||||||| |||||||  | ||| ||||||||| |||||| |||   |||||    
T  39980888 ttagggtctgtttggattggcttgtttgagcttatctactagcataagttttgtgagactgtttaagagaacttatgaaaacagcttatgactggtttca 39980789  T
Q  134 taacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattattg 223  Q
    |||  ||||| |  |||| ||||||| |||||||||| || |||||||||||||||||||||||| | ||||||||| ||||| ||||||    
T  39980788 taagcttttt-tcaacttattttcataagttctccaatatagcttataaaaacaacttatagcatgttcaaaaacaatttaacgttattg 39980700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 31365119 - 31365201
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| ||| ||||||||  |||||| ||||||||||||||    
T  31365119 cttatttgagcttatctattggcataagttttgtgagactgtttgggagaacttatgaaagcagcttatgacaattttcataa 31365201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 216
Target Start/End: Complemental strand, 20880615 - 20880454
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattga-cttg 152  Q
    |||||||||||||| ||| | ||||||||||  | | ||| |||||| |||  |||||||| |||||| ||||||||||||||  |||||  ||| |||     
T  20880615 cttatttgagcttatctacttgcataagtttccttagactatttgggagaacctatgaaaacagcttatgacaattttcataagcttttt--tgagctta 20880518  T
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    ||||||| |||||||||| || |||| ||||||||  ||||||||||||||||||||| |||||    
T  20880517 ttttcataagttctccaatatagcttttaaaaacagtttatagcatatacaaaaacaatttaac 20880454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 20257653 - 20257507
Alignment:
Q  76 cataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgtttt-catgagttctccaacatg 174  Q
    ||||| |||||||| |||||||||| ||| ||||||||  |||| | |||||||||||||| |||||||   |||| |||| ||| || ||||||| ||     
T  20257653 cataaattttgtgagactgtttgggagaacttatgaaagcagctaatgacaattttcataagttttttaaa-acttatttttcataagctctccaatata 20257555  T
Q  175 gcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    ||||  |||||||||||||||||||||||||||||| ||||| |||||    
T  20257554 gcttcaaaaaacaacttatagcatatacaaaaacaatttaactttatt 20257507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 57 - 216
Target Start/End: Complemental strand, 30444029 - 30443871
Alignment:
Q  57 atttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgtttt 156  Q
    ||||||||||| ||| |||||||| ||| |||| |||||||||  ||  ||||||||| |||||| ||||||||||| ||  |||||   | ||| ||||    
T  30444029 atttgagcttatctactggcataaatttggtgagactgtttggtagagcttatgaaaacagcttatgacaattttcacaagcttttttcag-cttatttt 30443931  T
Q  157 catgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    ||| |||||||||| || | ||||||||||| |||||||||||||||||| ||| |||||    
T  30443930 cataagttctccaatatagtttataaaaacagcttatagcatatacaaaagcaatttaac 30443871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 213
Target Start/End: Original strand, 18405763 - 18405920
Alignment:
Q  55 ttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgtt 154  Q
    ||||||||||||| ||| || |||||||||||||| ||||||||   ||| ||||||||| || | | |||| |||||||||  |||||   | |||  |    
T  18405763 ttatttgagcttatctactgacataagttttgtgagactgtttgcaagaacttatgaaaacagttcacgacacttttcataatctttttcaag-cttaat 18405861  T
Q  155 ttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaatt 213  Q
    ||||| |||||||||| || |||||| |||||||||||||||||||||||||| |||||    
T  18405862 ttcataagttctccaagatagcttatgaaaacaacttatagcatatacaaaaaaaaatt 18405920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 31365240 - 31365322
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    |||||||||| ||| |||||||||||| ||||||||||||||||||| ||| ||||||| | |||||| ||||||||||||||    
T  31365240 cttatttgagtttatctattggcataatttttgtgacactgtttgggagaacttatgaatacagcttatgacaattttcataa 31365322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 24684741 - 24684909
Alignment:
Q  42 tgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataactttt 141  Q
    |||||||| | ||||||||||||||| ||| ||||||||||||| ||| ||  |||||  ||| ||||||||| | |||| |||||||| || ||  |||    
T  24684741 tgtttggattaacttatttgagcttatctactggcataagttttttgagacattttggttgaacttatgaaaacaacttatgacaatttgcacaagattt 24684840  T
Q  142 ttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaa 210  Q
    || | | ||| |||||   || ||||| | || |||||||||| |||||||||||||||||||||||||    
T  24684841 ttttcgtcttattttctcaagatctccgatattgcttataaaagcaacttatagcatatacaaaaacaa 24684909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 584196 - 584018
Alignment:
Q  43 gtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttt 142  Q
    ||||||| | ||||||||||||||| ||| | ||||||||| ||||| ||||||| || ||||||||||||| |||||| | || ||||||||  ||| |    
T  584196 gtttggattgacttatttgagcttatctactagcataagttctgtgagactgttttggagaatttatgaaaacagcttacggcagttttcataggtttct 584097  T
Q  143 tattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    | |   |||  |||||| |||||| ||| || |||||| |||  ||||||||||||  |||||||||| ||||| |||||    
T  584096 t-taagcttaatttcataagttcttcaagatagcttatgaaactaacttatagcatgaacaaaaacaatttaactttatt 584018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 20170569 - 20170495
Alignment:
Q  148 acttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||| ||||||| ||||||| || ||  ||| ||||||||||||||||||||||||||||||| |||||||||||    
T  20170569 acttattttcattagttctcaaaaataacttgtaaaaacaacttatagcatatacaaaaacaatttaacattatt 20170495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 36631028 - 36631143
Alignment:
Q  100 gggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcata 199  Q
    ||||| ||||||||  |||||| ||| ||||||| ||  |||||  || ||| ||||||| |||||||||| || ||| ||||||||||||||||||||     
T  36631028 gggaacttatgaaaccagcttatgacgattttcaaaagcttttttctg-cttattttcataagttctccaatatagctcataaaaacaacttatagcatg 36631126  T
Q  200 tacaaaaacaaattaac 216  Q
    ||||||||||| |||||    
T  36631127 tacaaaaacaatttaac 36631143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 47132377 - 47132310
Alignment:
Q  148 acttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaa 215  Q
    |||| ||||||| | |||||||| || ||||||||||||||| |||||||||||||||||||| ||||    
T  47132377 acttattttcataacttctccaatatagcttataaaaacaacctatagcatatacaaaaacaatttaa 47132310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 215
Target Start/End: Original strand, 13715503 - 13715665
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgt 153  Q
    ||||||||| |||| ||| | ||||| ||||||||| |||||||||  ||| ||   |||| |||||| ||||| ||||||||   |||| |  |||| |    
T  13715503 cttatttgatcttatctactagcatatgttttgtgagactgtttggtagaacttcctaaaacagcttatgacaactttcataagcatttt-tcaacttat 13715601  T
Q  154 tttcatgagttctccaacatggcttata--aaaacaacttatagcatatacaaaaacaaattaa 215  Q
    |||||| |||| ||||| || |||||||  ||||||||||||| ||||||||||| ||||||||    
T  13715602 tttcataagttgtccaatatcgcttatataaaaacaacttatatcatatacaaaatcaaattaa 13715665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 21367806 - 21367639
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgt 153  Q
    |||||||||| ||| |||   ||||||||||||||  |||||||||| ||| ||||||||| |||||| |||| | |||| ||  | |||   | ||| |    
T  21367806 cttatttgagattatctaccagcataagttttgtgggactgtttgggagaacttatgaaaacagcttatgacattgttcacaagctgttttcag-cttat 21367708  T
Q  154 tttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||| |||||||||| || |||||| |||||||||||||   ||||| ||||||| ||||| |||||    
T  21367707 tttcataagttctccaagatagcttatgaaaacaacttatacattatacgaaaacaatttaactttatt 21367639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 51929277 - 51929369
Alignment:
Q  43 gtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcata 135  Q
    ||||||| | |||||||||| ||||  || ||||||||||||||||| ||| |||| | |||||| |||||| || ||| |||||||||||||    
T  51929277 gtttggattgacttatttgaccttatttactggcataagttttgtgatactatttgagagaatttctgaaaacagattatgacaattttcata 51929369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 46778122 - 46778209
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataactttt 141  Q
    ||||||||||||||  || |||||||| |||||||| || ||||||| ||| ||||||||| | |||| |||| ||||||||| ||||    
T  46778122 cttatttgagcttatttagtggcataaattttgtgaaaccgtttgggagaacttatgaaaacaacttatgacatttttcataagtttt 46778209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 49034300 - 49034355
Alignment:
Q  161 agttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    |||||||||| || |||||||||||||||||||||||||| || |||||| |||||    
T  49034300 agttctccaatatagcttataaaaacaacttatagcatatgcacaaacaatttaac 49034355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 16072949 - 16073007
Alignment:
Q  31 cacttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtga 89  Q
    |||||||| |||||||||| | ||||||||||||||| ||| || ||||||||||||||    
T  16072949 cacttaggacctgtttggattgacttatttgagcttatctaatgacataagttttgtga 16073007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 9832672 - 9832753
Alignment:
Q  40 cctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagctta 121  Q
    ||||||| || | |||||||||||||||  ||||| |||||||||||| | |||||||||| ||| || |||||| ||||||    
T  9832672 cctgtttagattgacttatttgagcttatttattgacataagttttgtcaaactgtttgggagaacttttgaaaacagctta 9832753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 12862285 - 12862330
Alignment:
Q  161 agttctccaacatggcttataaaaacaacttatagcatatacaaaa 206  Q
    |||||||||| || |||||| |||||||||||||||||||||||||    
T  12862285 agttctccaatatagcttatgaaaacaacttatagcatatacaaaa 12862330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 30956663 - 30956724
Alignment:
Q  161 agttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||||||| || |||| | ||||||||||||||| ||||||||||||| ||||| |||||    
T  30956663 agttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaatttaactttatt 30956724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 30972475 - 30972536
Alignment:
Q  161 agttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||||||| || |||| | ||||||||||||||| ||||||||||||| ||||| |||||    
T  30972475 agttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaatttaactttatt 30972536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 36189607 - 36189538
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    ||||||| |||||||||| ||  |||||||||| | |||||| ||||||||||||||| ||||| |||||    
T  36189607 ttttcataagttctccaatatatcttataaaaatagcttatatcatatacaaaaacaatttaactttatt 36189538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 22897 - 22976
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttca 133  Q
    ||||||||| |||  ||| ||||||||||||||||| | ||||| || ||| ||||||||| |||||| || ||||||||    
T  22897 cttatttgaacttgtctactggcataagttttgtgagattgtttaggagaagttatgaaaacagcttacgataattttca 22976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 24085269 - 24085336
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagctta 121  Q
    |||||||||||||| |||  |||||||||||||||| |||| || || ||| ||||||||| ||||||    
T  24085269 cttatttgagcttatctaccggcataagttttgtgagactggtttggagaacttatgaaaacagctta 24085336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 42320276 - 42320331
Alignment:
Q  75 gcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattt 130  Q
    ||||||||||||||| |||||||||| ||||| ||||||  | |||||||||||||    
T  42320276 gcataagttttgtgagactgtttgggagaattcatgaaatcaacttaagacaattt 42320331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 22203471 - 22203417
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaa 207  Q
    ||||||| |||||||||| || |||||| ||||||||||||||  ||||||||||    
T  22203471 ttttcataagttctccaagatagcttatgaaaacaacttatagattatacaaaaa 22203417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 26911697 - 26911635
Alignment:
Q  81 gttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataactttttt 143  Q
    ||||||||| || |||||||  ||| |||||||| |||||| |||||||||||||| ||||||    
T  26911697 gttttgtgagaccgtttgggataatatatgaaaacagcttatgacaattttcataagtttttt 26911635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 14145953 - 14145884
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    ||||||| |||  ||||| || |||||| |||| |||||||||||||||| ||||||| ||||| |||||    
T  14145953 ttttcataagtaatccaagatagcttatgaaaataacttatagcatatacgaaaacaatttaactttatt 14145884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 19678986 - 19678957
Alignment:
Q  1 tttgcttatatttagaaacggagggagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  19678986 tttgcttatatttagaaacggagggagtat 19678957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 19679078 - 19679107
Alignment:
Q  1 tttgcttatatttagaaacggagggagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  19679078 tttgcttatatttagaaacggagggagtat 19679107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 25447163 - 25447220
Alignment:
Q  41 ctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttg 98  Q
    ||||||||| | ||||||||||| ||| ||| || |||||||||||||| ||||||||    
T  25447163 ctgtttggattgacttatttgagtttatctactgacataagttttgtgagactgtttg 25447220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 47587485 - 47587452
Alignment:
Q  177 ttataaaaacaacttatagcatatacaaaaacaa 210  Q
    |||||||||||||||||| |||||||||||||||    
T  47587485 ttataaaaacaacttataacatatacaaaaacaa 47587452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 49092820 - 49092771
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatac 202  Q
    ||||||| ||||||| || || |||||||||||||||||| |||||||||    
T  49092820 ttttcataagttctctaatatagcttataaaaacaacttacagcatatac 49092771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 3845498 - 3845538
Alignment:
Q  58 tttgagcttaactattggcataagttttgtgacactgtttg 98  Q
    |||||||||| ||| ||||||||||||||||| ||||||||    
T  3845498 tttgagcttatctactggcataagttttgtgagactgtttg 3845538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 31365359 - 31365391
Alignment:
Q  183 aaacaacttatagcatatacaaaaacaaattaa 215  Q
    |||||||||||||||||||||||||||| ||||    
T  31365359 aaacaacttatagcatatacaaaaacaatttaa 31365391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 33405197 - 33405265
Alignment:
Q  154 tttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||| |||||| ||| || |||||| |||||| |||||||| ||||  ||||||||||||| |||||    
T  33405197 tttcataagttcttcaagatagcttatgaaaacagcttatagcttatatgaaaacaaattaactttatt 33405265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 44687924 - 44687896
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  44687924 tttgcttatatttagaaacggagggagta 44687896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 47132470 - 47132397
Alignment:
Q  39 gcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaa 114  Q
    ||||||||||| |  |||||||||||||| ||| |||||  |||||||||| ||||||| || ||| |||||||||    
T  47132470 gcctgtttggattggcttatttgagcttatctactggca--agttttgtgagactgttttggagaacttatgaaaa 47132397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 215
Target Start/End: Complemental strand, 26771403 - 26771244
Alignment:
Q  55 ttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa--cttttttattgacttg 152  Q
    |||| |||||||| |||  |||||||||||||||| |||||||||| ||| ||||||||| |||||| ||||||||||| ||  |||||| |   ||||     
T  26771403 ttatctgagcttatctacgggcataagttttgtgagactgtttgggagaacttatgaaaacagcttatgacaattttcaaaagcctttttca---actta 26771307  T
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaa 215  Q
    ||||||| ||||||| || ||  |||||||||| | |||||||||||||||||||||| ||||    
T  26771306 ttttcataagttctctaatatatcttataaaaaaagcttatagcatatacaaaaacaatttaa 26771244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 10758210 - 10758354
Alignment:
Q  76 cataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatgg 175  Q
    |||||||||||||| ||||||||   ||||||||||||| |||||| ||||||||||| ||  |||||   | ||||||||||| ||||  | || || |    
T  10758210 cataagttttgtgagactgtttgatagaatttatgaaaacagcttatgacaattttcaaaagcttttttcag-cttgttttcataagttg-ctaatatag 10758307  T
Q  176 cttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||||| |||||||||||||||||||||||||| ||||| |||||    
T  10758308 cttataaagacaacttatagcatatacaaaaacaatttaactttatt 10758354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 28763485 - 28763340
Alignment:
Q  76 cataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatgg 175  Q
    |||||||||||||| |||||||||| ||| ||||||||| ||||||  |||||||||||||  ||||| |  ||||  |||||| |||||  ||| || |    
T  28763485 cataagttttgtgagactgtttgggagaacttatgaaaacagcttataacaattttcataagctttttttcaactt-atttcataagttcagcaatatag 28763387  T
Q  176 cttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||||||||||||| ||||||||  |||| ||| ||||| |||||    
T  28763386 cttataaaaacaacttctagcatatgtaaaagcaatttaacgttatt 28763340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 210
Target Start/End: Original strand, 30251367 - 30251540
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcata 135  Q
    |||||||||||||| |  |||||||||||||| ||| || ||||||||| |||| |||||||||| ||| ||| ||||| ||||||   || ||||||||    
T  30251367 agggcctgtttggattggcttatttgagcttatctactgacataagtttcgtgagactgtttgggagaacttacgaaaacagcttattgcatttttcata 30251466  T
Q  136 acttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaa 210  Q
    |  ||||||  | ||| ||||||| |||  ||||| || |||||| |||||| |||||| ||||||||| |||||    
T  30251467 agctttttacag-cttattttcataagtggtccaagatagcttatgaaaacagcttataacatatacaataacaa 30251540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 35534527 - 35534709
Alignment:
Q  37 gggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    |||||||||| |||| ||||||||||||||| ||| |  |||||||||||||| |||||||| | ||| || |||||| |||||| ||||||||| | ||    
T  35534527 gggcctgtttagaatgacttatttgagcttatctactaacataagttttgtgagactgtttgagagaacttgtgaaaacagcttatgacaattttaacaa 35534626  T
Q  137 cttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
      ||||| | | |||  |||||| |||||||||| ||  ||||| |||||||| ||||  | |||||||||||| ||||| |||||    
T  35534627 gcttttt-tcggcttactttcataagttctccaatataacttatgaaaacaacatata--acatacaaaaacaatttaactttatt 35534709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 35643900 - 35644001
Alignment:
Q  35 tagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcat 134  Q
    ||||||||||| ||| |  |||||||| ||||| ||| |||||||| |||||||| ||||||||||  || |||||||||||| ||| ||||||||||||    
T  35643900 tagggcctgttgggattggcttatttgggcttatctactggcataatttttgtgagactgtttgggataacttatgaaaatagtttatgacaattttcat 35643999  T
Q  135 aa 136  Q
    ||    
T  35644000 aa 35644001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 216
Target Start/End: Complemental strand, 27028971 - 27028809
Alignment:
Q  53 acttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttg 152  Q
    ||||||||||| ||| | | |||||||||||| |||| | |||||||| ||| || |||||| |||||| |||| |||||||||  | |||   | |||     
T  27028971 acttatttgagtttatccactggcataagtttagtgagattgtttgggagaaattctgaaaacagcttaggacatttttcataagctattttcag-ctta 27028873  T
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    ||||||| || ||||||| || |||||| |||||| ||||||||||||||| |||||| |||||    
T  27028872 ttttcataagctctccaagatagcttatgaaaacagcttatagcatatacacaaacaatttaac 27028809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 43717842 - 43717925
Alignment:
Q  31 cacttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaa 114  Q
    |||||||||||| |||||| |  |||||||||||||| |||||| |||||||||||||| ||| |||||| ||| |||||||||    
T  43717842 cacttagggcctatttggattggcttatttgagcttatctattgacataagttttgtgagactatttgggagaacttatgaaaa 43717925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 6882044 - 6881911
Alignment:
Q  76 cataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa-cttttttattgacttgttttcatgagttctccaacatg 174  Q
    |||||||||||||| |||||||||| |||  |||||||| |||| | || |||||| | || ||||||| ||| ||| ||||||| ||||||||||  |     
T  6882044 cataagttttgtgagactgtttgggagaacctatgaaaacagctcatgataattttaacaagctttttttttg-cttattttcataagttctccaattta 6881946  T
Q  175 gcttataaaaacaacttatagcatatacaaaaacaa 210  Q
    |||||| |||||| ||||||||||||| ||||||||    
T  6881945 gcttat-aaaacagcttatagcatatataaaaacaa 6881911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 16825521 - 16825635
Alignment:
Q  106 ttatgaaaatagcttaagacaattttcataa-cttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaa 204  Q
    |||||||||||||||| |||||||||||||| |||||| |   |||| ||||||| |||||  ||| || |||| || |||||||||||| | || ||||    
T  16825521 ttatgaaaatagcttatgacaattttcataagctttttca---acttattttcataagttcggcaatatagcttgtagaaacaacttataacgtaaacaa 16825617  T
Q  205 aaacaaattaacattatt 222  Q
    |||||| |||||||||||    
T  16825618 aaacaatttaacattatt 16825635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 36963272 - 36963364
Alignment:
Q  41 ctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttca 133  Q
    ||||||||| |  |||||||||||| | ||| ||||||||||||||||| |||||||||| ||| |||  |||| |||||  |||||||||||    
T  36963272 ctgtttggattggcttatttgagctaatctactggcataagttttgtgagactgtttgggagaacttacaaaaacagcttttgacaattttca 36963364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 38602483 - 38602411
Alignment:
Q  37 gggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttat 109  Q
    ||||||||||||| | ||||||||||||||| ||| || ||||||||||||||  ||||||||| ||| ||||    
T  38602483 gggcctgtttggattgacttatttgagcttatctactgacataagttttgtgaggctgtttgggagaacttat 38602411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 216
Target Start/End: Complemental strand, 15180698 - 15180519
Alignment:
Q  34 ttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttca 133  Q
    ||||| |||||||||| |  |||||||||| ||| ||| || |||||||||| ||| ||| ||||| | ||||| |||||| || ||  ||||||||||     
T  15180698 ttaggacctgtttggattggcttatttgagtttatctactgccataagttttatgagactttttggag-aatttctgaaaacaggttttgacaattttcc 15180600  T
Q  134 taacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
     |  |||||||   |||| ||||||  |||||||||| || ||||||| |||||||||||| ||| |||||||| || |||||    
T  15180599 aagtttttttaa--acttattttcagaagttctccaatatagcttatagaaacaacttataacatttacaaaaataatttaac 15180519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 215
Target Start/End: Complemental strand, 38648490 - 38648330
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa-cttttttattgacttg 152  Q
    ||||||| || ||| ||| || |||||||||||||| |||||||||| ||  ||||||||| |||| | |||| || |||||| ||||||||    | |     
T  38648490 cttatttaagattatctactgacataagttttgtgagactgtttgggagaccttatgaaaacagctcatgacagttctcataagcttttttaag--cgta 38648393  T
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaa 215  Q
     |||||| |||||| ||| || |||||| ||||||||| ||| ||||||||||||||| ||||    
T  38648392 atttcataagttctacaagatagcttatgaaaacaactcataacatatacaaaaacaagttaa 38648330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 38750377 - 38750330
Alignment:
Q  175 gcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||||||||||||||||| ||||||||||||||  |||||||||||    
T  38750377 gcttataaaaacaacttatatcatatacaaaaacattttaacattatt 38750330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 222
Target Start/End: Original strand, 1058008 - 1058172
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataacttttttattgacttgt 153  Q
    |||||||||||||| ||| |  |||||||||||||| |||||||||| ||| || ||||||  ||||| |||| ||||||| | |||||  |   ||| |    
T  1058008 cttatttgagcttatctacttacataagttttgtgagactgtttgggagaacttttgaaaactgcttatgacatttttcattagttttt--tccgcttat 1058105  T
Q  154 tttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||| |||||||||| ||    | | |||| | ||||||||||||||||||||| |||||| |||||    
T  1058106 tttcataagttctccaagat--aatgtgaaaatagcttatagcatatacaaaaacagattaactttatt 1058172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 11861845 - 11861791
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaa 207  Q
    ||||||| ||||||| |  || |||||||||||||||||||||||||||||||||    
T  11861845 ttttcataagttctctattatagcttataaaaacaacttatagcatatacaaaaa 11861791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 29818938 - 29818996
Alignment:
Q  148 acttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaa 206  Q
    |||| ||||||| || || |||| |||||||||||||||||||||||||||||| ||||    
T  29818938 acttattttcataagctcgccaatatggcttataaaaacaacttatagcatataaaaaa 29818996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 29205925 - 29205786
Alignment:
Q  75 gcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa-cttttttattgacttgttttcatgagttctccaacat 173  Q
    ||||||||| ||||| ||||| || | ||| |||| |||| ||| || |||| ||||||||| ||||||||   || |  |||||| | |||||||| ||    
T  29205925 gcataagttctgtgatactgtctgagagaacttattaaaacagcgtatgacatttttcataagctttttta---acctactttcataaattctccaaaat 29205829  T
Q  174 ggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
     | |||| |||| |||||||||||||||||||||||| |||||    
T  29205828 agtttatgaaaataacttatagcatatacaaaaacaatttaac 29205786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 16734047 - 16734008
Alignment:
Q  176 cttataaaaacaacttatagcatatacaaaaacaaattaa 215  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  16734047 cttatcaaaacaacttatagcatatacaaaaacaatttaa 16734008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 43045641 - 43045771
Alignment:
Q  39 gcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataact 138  Q
    ||||||||||| |  ||||||| |||||| ||| | ||||||| ||||||| ||||||| || ||  ||||||||| ||||||  |||||||| ||||      
T  43045641 gcctgtttggattggcttatttaagcttatctactagcataagatttgtgagactgttttggagatcttatgaaaacagcttacaacaattttaataagc 43045740  T
Q  139 tttttattgacttgttttcatgagttctccaa 170  Q
    ||||| |  |||| ||||||| ||||||||||    
T  43045741 ttttt-tcaacttattttcataagttctccaa 43045771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 9130250 - 9130296
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttggg 100  Q
    |||||||||||||| ||| ||||||||||||||||| ||| ||||||    
T  9130250 cttatttgagcttatctactggcataagttttgtgagactatttggg 9130296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 12496985 - 12497047
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttg 98  Q
    ||||||| |||||| | | ||||||||||||| ||  ||||||||||||||||| ||||||||    
T  12496985 agggcctatttggattgatttatttgagcttatctcctggcataagttttgtgagactgtttg 12497047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 31716158 - 31716240
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    |||||||||||||| |||||||||||  |||| ||| ||||||| || ||| || |||||| |||||| |||| | |||||||    
T  31716158 cttatttgagcttatctattggcatattttttttgagactgtttcggagaacttttgaaaacagcttatgacattcttcataa 31716240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 8407799 - 8407738
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgttt 97  Q
    |||||||||||||| |||| |||||||| ||| |||  |||||| ||||||||| |||||||    
T  8407799 agggcctgtttggattcacatatttgagtttatctagcggcataggttttgtgagactgttt 8407738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 40802227 - 40802198
Alignment:
Q  1 tttgcttatatttagaaacggagggagtat 30  Q
    ||||||||||||||||||||||||||||||    
T  40802227 tttgcttatatttagaaacggagggagtat 40802198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 25930591 - 25930639
Alignment:
Q  161 agttctccaacatggcttataaaaacaacttatagcatatacaaaaaca 209  Q
    |||||||||| || |||||| ||||||| ||| ||||||||||||||||    
T  25930591 agttctccaagatagcttatgaaaacaatttaaagcatatacaaaaaca 25930639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 42043377 - 42043437
Alignment:
Q  156 tcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    |||| ||||||| || || |||||| ||||||||||||| ||||| ||||||||| |||||    
T  42043377 tcattagttctctaagatagcttatgaaaacaacttatatcatatccaaaaacaatttaac 42043437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 42631803 - 42631775
Alignment:
Q  1 tttgcttatatttagaaacggagggagta 29  Q
    |||||||||||||||||||||||||||||    
T  42631803 tttgcttatatttagaaacggagggagta 42631775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 221
Target Start/End: Complemental strand, 6538672 - 6538485
Alignment:
Q  35 tagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcat 134  Q
    ||||||||||||||| |  |||||||||| |||  || |||||||||||| |||| |||||| ||| ||||| ||||||| |||||| |   ||||||||    
T  6538672 tagggcctgtttggattgtcttatttgagtttatgtagtggcataagtttggtgagactgttcgggagaattgatgaaaacagcttatggtgattttcat 6538573  T
Q  135 aacttttttattga-cttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattat 221  Q
    ||    | |||| | ||| |||| || |||||||||| || || |||||||||||||||||||||||||| |||||| ||||||||||    
T  6538572 aaaaaatatattcaacttattttaataagttctccaatatagcctataaaaacaacttatagcatatacataaacaatttaacattat 6538485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 210
Target Start/End: Complemental strand, 6536769 - 6536599
Alignment:
Q  36 agggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcata 135  Q
    ||||| |||||||| | | ||||||||| ||| ||| || |||||||||||||||  |||||||| |||||||| |||  ||||||   |||||||||||    
T  6536769 agggcatgtttggattaaattatttgagtttacctactgacataagttttgtgac--tgtttgggagaatttatcaaac-agcttacagcaattttcata 6536673  T
Q  136 acttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaa 210  Q
    |  ||||| |  |||| ||||||| | |||||||| || |||| |||||||||||||||||||||||||||||||    
T  6536672 agcttttt-tcaacttattttcataaattctccaatatagcttctaaaaacaacttatagcatatacaaaaacaa 6536599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 8201274 - 8201212
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaa 215  Q
    ||||||| |||||||||||||  |||||||||||||||||||| ||| |||||||||| ||||    
T  8201274 ttttcataagttctccaacataacttataaaaacaacttataggatacacaaaaacaatttaa 8201212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 210
Target Start/End: Complemental strand, 35099187 - 35099021
Alignment:
Q  42 tgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataactttt 141  Q
    |||||||| | |||||||||||| || | || || ||||||||| |||  ||||||||| ||||||| ||||| |||| | |||| ||||| ||| ||||    
T  35099187 tgtttggattgacttatttgagcctatccatcggtataagttttctgaggctgtttgggagaatttaggaaaacagctaatgacatttttcgtaagtttt 35099088  T
Q  142 ttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaa 210  Q
    |  |  |||| ||||||  | | ||| || || |||||| ||||||||||||| |||||||||||||||    
T  35099087 t--tcaacttattttcaaaaatactctaagatagcttatgaaaacaacttataacatatacaaaaacaa 35099021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 21405064 - 21405148
Alignment:
Q  33 cttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatag 117  Q
    ||||||| ||||||||| | |||||||||||||||  || || |||||||||||||| | | |||||||||| | ||||||||||    
T  21405064 cttagggtctgtttggattgacttatttgagcttatatactgacataagttttgtgagaatatttgggggaactaatgaaaatag 21405148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 848147 - 848050
Alignment:
Q  34 ttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttc 132  Q
    |||||||||||||||| |  |||||||||||||| ||| | ||||||||||||||| |||||||||  ||| |||| ||||  ||||| |||| |||||    
T  848147 ttagggcctgtttggattgccttatttgagcttatcta-tagcataagttttgtgagactgtttggaagaacttataaaaactgcttatgacatttttc 848050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 9559358 - 9559420
Alignment:
Q  59 ttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagctta 121  Q
    ||||| ||| ||||||||||||||||||||| ||||||| || ||| ||||||||| ||||||    
T  9559358 ttgagattatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctta 9559420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 6200651 - 6200546
Alignment:
Q  102 gaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatata 201  Q
    |||||| |||||||| ||||  |||||||| |||| | ||||  | || | ||||||| |||||||||| ||   |||||||||||| ||||||||||||    
T  6200651 gaatttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcatata 6200552  T
Q  202 caaaaa 207  Q
    ||||||    
T  6200551 caaaaa 6200546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 6909925 - 6909970
Alignment:
Q  177 ttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||    
T  6909925 ttatgaaaacaacttatagcatatacaaaaacaatttaactttatt 6909970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 11784069 - 11784121
Alignment:
Q  163 ttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaa 215  Q
    |||||||| || |||||| |||||| |||||||||||||||||||||| ||||    
T  11784069 ttctccaatatagcttatgaaaacagcttatagcatatacaaaaacaatttaa 11784121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 223
Target Start/End: Complemental strand, 13907732 - 13907556
Alignment:
Q  44 tttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataactttttt 143  Q
    |||||| || |||||||||| ||| ||| |||||||||||||| |||   ||||| | ||||||||||||| |||||  |||| | |||| || || |||    
T  13907732 tttggattcgcttatttgagtttatctagtggcataagttttgagacg--gtttgagagaatttatgaaaacagcttctgacattgttcacaagttattt 13907635  T
Q  144 attgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattattg 223  Q
       |  || ||||||| | |||||||| ||||||||| ||||||||||||||  ||||| |||  |||||||| ||||||    
T  13907634 tcagt-ttattttcataatttctccaagatggcttatgaaaacaacttataggttatacgaaagtaaattaactttattg 13907556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 30536634 - 30536570
Alignment:
Q  62 agcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagaca 126  Q
    |||||| ||| |||| |||||||||||| |||||||||| | | |||||||||||||||| ||||    
T  30536634 agcttatctactggcgtaagttttgtgagactgtttgggaggacttatgaaaatagcttatgaca 30536570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 415337 - 415282
Alignment:
Q  161 agttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    |||||||||  || |||||||||||||||||||||| ||||| ||||||| |||||    
T  415337 agttctccactatagcttataaaaacaacttatagcttatacgaaaacaatttaac 415282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 24626324 - 24626273
Alignment:
Q  165 ctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaac 216  Q
    |||||| || |||||| |||||||||||||| |||||||||||||| |||||    
T  24626324 ctccaagatagcttatgaaaacaacttatagaatatacaaaaacaatttaac 24626273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 33169298 - 33169328
Alignment:
Q  1 tttgcttatatttagaaacggagggagtatc 31  Q
    |||||||||||||||||||||||||||||||    
T  33169298 tttgcttatatttagaaacggagggagtatc 33169328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 103584 - 103535
Alignment:
Q  39 gcctgtttggaatcacttatttgagcttaactattggcataagttttgtg 88  Q
    ||||||||||| | |||||||||||||||  |||| ||||||||||||||    
T  103584 gcctgtttggattgacttatttgagcttatatattagcataagttttgtg 103535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 18076229 - 18076168
Alignment:
Q  161 agttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattatt 222  Q
    |||||| ||| || |||||||||||||||||||||||  || |||||||| ||||| |||||    
T  18076229 agttcttcaatatagcttataaaaacaacttatagcaattagaaaaacaatttaaccttatt 18076168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 34430490 - 34430547
Alignment:
Q  153 ttttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaa 210  Q
    ||||||| | |||||||| || |||||| |||||| |||||| |||||||||||||||    
T  34430490 ttttcataacttctccaagatagcttatgaaaacaccttataacatatacaaaaacaa 34430547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 23063468 - 23063532
Alignment:
Q  57 atttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagctta 121  Q
    |||||| |||| ||| ||||||||||||||  ||||||||| |  ||| ||||||||||||||||    
T  23063468 atttgaacttatctactggcataagttttgatacactgtttagaagaacttatgaaaatagctta 23063532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 30926674 - 30926578
Alignment:
Q  38 ggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcat 134  Q
    |||||||||||  |  ||||||||||||||  |  |||||||| |||  ||| |||||||||  ||| ||||||||| |||||| ||||||||||||    
T  30926674 ggcctgtttggtttggcttatttgagcttattttctggcataaatttgatgagactgtttggaagaacttatgaaaacagcttatgacaattttcat 30926578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 31813281 - 31813233
Alignment:
Q  73 tggcataagttttgtgacactgtttgggggaatttatgaaaatagctta 121  Q
    ||||||||||||||||| ||| |||||| ||| |||||||||| |||||    
T  31813281 tggcataagttttgtgagactatttgggagaacttatgaaaattgctta 31813233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 24759 - 24688
Alignment:
Q  55 ttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagaca 126  Q
    |||||||||| || ||||||||||| ||||||||| |||||||||| ||| |||| |||| |||||| ||||    
T  24759 ttatttgagcgtatctattggcatatgttttgtgagactgtttgggagaacttatcaaaacagcttatgaca 24688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 44172 - 44115
Alignment:
Q  54 cttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatga 111  Q
    ||||||||||| || ||| ||||||| ||||||||| |||||||||| ||| ||||||    
T  44172 cttatttgagcgtacctactggcatatgttttgtgagactgtttgggagaacttatga 44115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 918 - 995
Alignment:
Q  59 ttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttcataa 136  Q
    ||||||||| |||  |||||||||||||||| ||||||| ||  || |||| ||||||||||| |||| |||||||||    
T  918 ttgagcttatctaccggcataagttttgtgatactgttttggacaacttataaaaatagcttatgacatttttcataa 995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 58901 - 58746
Alignment:
Q  34 ttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagcttaagacaattttca 133  Q
    ||||||||| |||||| |  |||||||||||||| ||  |||   ||||||||||  |||||||  |  |||||||||||  || ||| |||||||||||    
T  58901 ttagggcctatttggattagcttatttgagcttatcttatggtggaagttttgtgtgactgtttttgaaaatttatgaaagcagtttatgacaattttca 58802  T
Q  134 taacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaact 190  Q
    |||  ||||| |  ||||  |||||| |||||| |||||| |||||| |||||||||    
T  58801 taagcttttt-tcaacttaatttcataagttcttcaacatagcttatgaaaacaact 58746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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