View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13486_low_12 (Length: 235)
Name: NF13486_low_12
Description: NF13486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13486_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 35688039 - 35688269
Alignment:
| Q |
1 |
acctttccatttttgtagtggttttttccatttgtctctttgctgtcttcatatacaatgaagacgttaaatcaatagctgagtttccattttcaaggcc |
100 |
Q |
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| T |
35688039 |
acctttccatttttgtagtggttttttccatttgtctctttgctgtcttcatatacaatgaagacgttaaatcaatagctgagtttccattttcaaggcc |
35688138 |
T |
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| Q |
101 |
taaagtacaagaaacccatcaagaaaaaccgaataagatcgagtcattacaaaaagatacaaagaaagtggttgtagaagaagacactgttgatgttgat |
200 |
Q |
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| T |
35688139 |
taaagtacaagaaacccatcaagaaaaaccgaataagatcgagtcattacaaaaagatacaaagaaagtggttgtagaagaagacactgttgatgttgat |
35688238 |
T |
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| Q |
201 |
gataccaaaaaagatgttgtggaagaaactg |
231 |
Q |
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| T |
35688239 |
gataccaaaaaagatgttgtggaagaaactg |
35688269 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 31821294 - 31821349
Alignment:
| Q |
36 |
ctctttgctgtcttcatatacaatgaagacgttaaatcaatagctgagtttccatt |
91 |
Q |
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| T |
31821294 |
ctctttggtgtcttcatgtacaatgaagacgttaagtcaatagcggagttttcatt |
31821349 |
T |
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