View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13486_low_14 (Length: 222)
Name: NF13486_low_14
Description: NF13486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13486_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 4160258 - 4160072
Alignment:
| Q |
19 |
atgaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
4160258 |
atgaacatgtccccaccaacatatgtcaaattgttacttccacataaattctctacaacctttggacgatcaaaaacaacacaagtcaacttaggaaatg |
4160159 |
T |
|
| Q |
119 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4160158 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattgcaatctt |
4160072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 4171744 - 4171930
Alignment:
| Q |
19 |
atgaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatg |
118 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |
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| T |
4171744 |
atgaacatgtccccaccgacatatgtcaaattgttacttccacataaattctctacaacctttggacgatcaaaaacaacacatctcaacttaggatatg |
4171843 |
T |
|
| Q |
119 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |
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| T |
4171844 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgaatccaacccctcaaacacaaaattgcaatctt |
4171930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 4177368 - 4177552
Alignment:
| Q |
20 |
tgaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatgt |
119 |
Q |
| |
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|||||||||||||||||||||| |||||||| || ||||| |||| ||||||||||| | ||| | |||||| |||| |||||||||||||| ||| || |
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| T |
4177368 |
tgaacatgtccccaccaacataagtcaaattattgcttccagataagttctctacaacttgtggcctatcaaacacaatacatttcaacttaggaaaagt |
4177467 |
T |
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| Q |
120 |
ctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatct |
204 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||| |
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| T |
4177468 |
ctcacaaataattttaccagtggttccatttccaccaccaacatccacaattgattccaatccatcaaacacaaaatcacaatct |
4177552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 34343695 - 34343574
Alignment:
| Q |
71 |
ctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaat |
170 |
Q |
| |
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||||||||| |||| ||||| ||||||||||||||||||||| ||| | |||||| ||||| || | || |||||| |||||||||||||||||||||| |
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| T |
34343695 |
ctacaacctgtggaagatcataaacaacacatttcaacttaggaaaagcctcacatataattctagctgtggttccagttccaccaccaacatccacaat |
34343596 |
T |
|
| Q |
171 |
tgattccaacccctcaaacacc |
192 |
Q |
| |
|
|| || | ||| ||||||||| |
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|
| T |
34343595 |
agaatcaatcccttcaaacacc |
34343574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 34331071 - 34330971
Alignment:
| Q |
88 |
tcaaaaacaacacatttcaacttagaaaatgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaa |
187 |
Q |
| |
|
|||||||||| |||||| | ||||| ||| | |||||| ||||| ||| | || ||||||||||||||||||||||||||||| ||||| | |||||||| |
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| T |
34331071 |
tcaaaaacaagacatttgaccttaggaaaagcctcacatataattttagccgtcgttccatttccaccaccaacatccacaatagattctatcccctcaa |
34330972 |
T |
|
| Q |
188 |
a |
188 |
Q |
| |
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| |
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|
| T |
34330971 |
a |
34330971 |
T |
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