View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13486_low_2 (Length: 639)
Name: NF13486_low_2
Description: NF13486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13486_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 4 - 621
Target Start/End: Complemental strand, 46846055 - 46845439
Alignment:
| Q |
4 |
tcaaagattcaattgaattgaattgaacaaaagcttagaatgaaagaattgtttgtaaacaggtgaatagataactggtgtagctttgaatgaataagta |
103 |
Q |
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| T |
46846055 |
tcaaagattcaattgaattgaattgaacaaaagcttagaatgaaagaattgtttgtaaacaggtgaatagataactggtgtagctttgaatgaataagta |
46845956 |
T |
|
| Q |
104 |
gctgatgtttgttgtctatttataaggtgagttggtgaaaaactgttcattatgaaaattattttgaacctaagaaagggagaagagtggcacctaggca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46845955 |
gctgatgtttgttgtctatttataaggtgagttggtgaaagactgttcattatgaaaattattttgaacctaagaaagggagaagagtggcactaaggca |
46845856 |
T |
|
| Q |
204 |
ggtggagtttgatggtttcagatgaaatccaccgtctcagacagttgttttcactttgatttctgttactgtcggttgattcttttgttgtttcctcaat |
303 |
Q |
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| T |
46845855 |
ggtggagtttgatggttttagatgaaatccaccgtctcagacagttgttttcactttgatttctgttactgtcggttgattcttttgttgtttcctcaat |
46845756 |
T |
|
| Q |
304 |
agtaaaaatactcaaactannnnnnnacatgtctttatgcaaacatcacatggcatgcaaatactattactaaatactaaccttatccacaactagtgtc |
403 |
Q |
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| T |
46845755 |
agtaaaa-tactcaaactatttttttacatgtctttatgcaaacatcacatggcatgcaaatactattactaaatactaaccttatccacaactagtgtc |
46845657 |
T |
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| Q |
404 |
ttaaaattgacagagaagtccataaaaataaaatgcacatgttctttttcccatgatcctatatctcattgtttattaatttggtacactttattaagtt |
503 |
Q |
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| T |
46845656 |
ttaaaattgacagagaagtccataaaaataaaatgcacatgttctttttcccatgatcctatatctcattgtttattaatttggtacactttattaagtt |
46845557 |
T |
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| Q |
504 |
aaagaaaagcacctttagcaaattagatatggcagtgtagaagggagtggtttagtgtaaaagatggcttaaaaccatgggtattccaataactaaatat |
603 |
Q |
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| T |
46845556 |
aaagaaaagcacctttagcaaattagatatggcagtgtagaagggagtggtttagtgtaaaagatggcttaaaaccatgggtattccaataactaaatat |
46845457 |
T |
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| Q |
604 |
tccataaacaaatggagt |
621 |
Q |
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|||||||||||||||||| |
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| T |
46845456 |
tccataaacaaatggagt |
46845439 |
T |
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