View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13486_low_5 (Length: 310)
Name: NF13486_low_5
Description: NF13486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13486_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 25 - 285
Target Start/End: Original strand, 36394194 - 36394459
Alignment:
| Q |
25 |
gagaatggacgcagctctcgacgctatgattccgtttggttttcctaacaaactcgttcgtcaaaccgttgatcaattgctcaaagtaatgtttcgnnnn |
124 |
Q |
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| T |
36394194 |
gagaatggacgcagctctcgacgctatgattccgtttggttttcctaacaaactcgttcgtcaaaccgttgatcaattgctcaaagtaatgtttcgtttt |
36394293 |
T |
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| Q |
125 |
nnnctccatttaatcatcattaatattattaccttctaatttcgttaattaataataatgcttaat-----ttgtgtttaggtttatgacggtagttggg |
219 |
Q |
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| T |
36394294 |
tttctccatttaatcatcattaatattattacgttctaatttcgttaattaataataatgcttaatttgtgttgtgtttaggtttatgacggtagttggg |
36394393 |
T |
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| Q |
220 |
ttttcattgaagaacattcttatactcttctcattgatactcttcttgaaaaacaacagaatcaga |
285 |
Q |
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| T |
36394394 |
ttttcattgaagaacatgcttatactcttctcattgatactcttcttgaaaaacaacagaatcaga |
36394459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 10787122 - 10787061
Alignment:
| Q |
33 |
acgcagctctcgacgctatgattccgtttggttttcctaacaaactcgttcgtcaaaccgtt |
94 |
Q |
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| T |
10787122 |
acgcagctctcgacgccatgactcctttaggttttgataaaaaactcgttcatcaaaccgtt |
10787061 |
T |
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