View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13486_low_8 (Length: 250)
Name: NF13486_low_8
Description: NF13486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13486_low_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 47729673 - 47729439
Alignment:
| Q |
16 |
atgagtagcttggatagagttgaaggaagtttgtccgaagctcgagcctcaattcgagaagcaattctttcaaggaattacagtacttcaaggaggcgtg |
115 |
Q |
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| T |
47729673 |
atgagtagcttggatagagttgaaggaagtttgtccgaagctcgagcctcaattcgagaagcaattctttcaaggaattacagtacttcaaggaggcgtg |
47729574 |
T |
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| Q |
116 |
atgtttttgtcccaagagggtccatttacagaaatccatatgcttttcatcagttaagtttgagaaattcttctgaattaaaatttcaatgttttagtct |
215 |
Q |
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| T |
47729573 |
atgtttttgtcccaagagggtccatttacagaaatccatatgcttttcatcagttaagtttgagaaattcttctgaattaaaatttcaatgttttagtct |
47729474 |
T |
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| Q |
216 |
ttaaaaatggcactgttgcattcgcgactttgata |
250 |
Q |
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| T |
47729473 |
ttaaaaatggcactgttgcattcgcgactttgata |
47729439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 47726760 - 47726704
Alignment:
| Q |
120 |
ttttgtcccaagagggtccatttacagaaatccatatgcttttcatcagttaagttt |
176 |
Q |
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| T |
47726760 |
ttttgttccaaaagggtccatttacttgaatccacatgcttttcaccagttaagttt |
47726704 |
T |
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