View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13487_low_1 (Length: 221)
Name: NF13487_low_1
Description: NF13487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13487_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 51784670 - 51784481
Alignment:
| Q |
18 |
cacacccattctatactttgaaaacaaaatggaacatacttagagagagggagaaatgacggaaaagggagtccgaaagaagaaggagagatcaaacatt |
117 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51784670 |
cacaaccattctatactttgaaaacaaaatagaacatacttagagagagggaaaaatgacggaaaagggagtccgaaagaagaaggagagatcaaacatt |
51784571 |
T |
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| Q |
118 |
cactctagaaagacaagtaagaatcccattattattcccttaatccattttattattagtgaagaatcaaaattatccctcatattcttcg |
208 |
Q |
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| T |
51784570 |
cactctagaaagacaagtaagaatcccattattatt-ccttaatccattttattattagtgaagaatcaaaattatccctcatatttttcg |
51784481 |
T |
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Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 19932494 - 19932612
Alignment:
| Q |
18 |
cacacccattctatactttgaaaacaaaatggaacatacttagagagagggagaaatgacggaaaagggagtccgaaagaagaaggagagatcaaacatt |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
19932494 |
cacacccattctatattttgaaaacaaaatggaacatacttggagagagggagaaatgatggaaaagggagtccgaaagaagaaggagagatcaaacatt |
19932593 |
T |
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| Q |
118 |
cactctagaaagacaagta |
136 |
Q |
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| T |
19932594 |
cactctagaaagacaagta |
19932612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 37940329 - 37940201
Alignment:
| Q |
18 |
cacacccattctatactttgaaaacaaaatggaacatacttagagagagggagaaatgacggaaaagggagtccgaaagaagaaggagagatcaaacatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| || |||||||||||||||||| |
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| T |
37940329 |
cacacccattctatactttgaaaacaaaatggaacatacttaaagagagggagaaatgacggacaagggagtccga---aaaaaggagagatcaaacatt |
37940233 |
T |
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| Q |
118 |
cactctagaaagacaagtaagaatcccattat |
149 |
Q |
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| T |
37940232 |
cattctagaaagacaagtaagaatcctattat |
37940201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 28655542 - 28655437
Alignment:
| Q |
69 |
agaaatgacggaaaagggagtccgaaagaagaaggagaga--tcaaacattcactctagaaagacaagtaagaatcccattattattcccttaatccatt |
166 |
Q |
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||||| ||||||||||||||| | || ||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |
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| T |
28655542 |
agaaaagacggaaaagggagttccaatgaaaaaggagagagatcaaacattcactctagaaagacaagtaagaatccccttattgtt-ccttaatccatt |
28655444 |
T |
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| Q |
167 |
ttattat |
173 |
Q |
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||||||| |
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| T |
28655443 |
ttattat |
28655437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 6817192 - 6817284
Alignment:
| Q |
82 |
aagggagtccgaaagaagaaggagag--atcaaacattcactctagaaagacaagtaagaatcccattattattcccttaatccattttattat |
173 |
Q |
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||||||||| ||| |||||||||||| ||||||||||||||||||| |||||||||| |||||| |||||||| ||||||||||||||||||| |
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| T |
6817192 |
aagggagtcagaaggaagaaggagagtgatcaaacattcactctagagagacaagtaaaaatccccttattatt-ccttaatccattttattat |
6817284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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