View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13488_low_1 (Length: 525)
Name: NF13488_low_1
Description: NF13488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13488_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 4 - 508
Target Start/End: Complemental strand, 45144425 - 45143921
Alignment:
| Q |
4 |
atgtcgaagaatatcggtcgttgaattcaagttgcagatgatgcggcatataactcgctagtctaacaatttaggtttttataatgtaagtgtagatact |
103 |
Q |
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| T |
45144425 |
atgtctaataatatcggtcgttgaattcaagttgcagatgatgcggcatataactcgctagtctaacaatttaggtttttaaaatgtaagtgtagatact |
45144326 |
T |
|
| Q |
104 |
aaaccattcgctttcctcacctagtcaaaactgagtgtggtttttactcattgaaggtgttgtggtcgtttaggttaacttccattttttattcgttgtt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144325 |
aaaccattcgctttcctcacctagtcaaaactgagtgtggtttttactcattgaaggtgttgtggtcgtttaggttaacttccattttttattcgttgtt |
45144226 |
T |
|
| Q |
204 |
tacattgttcaaaattcatggtggaaagccgacatctcaatgccctttgttatagaaatttttacggcaaattcatagatgtaatcacgtgttctatcag |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
45144225 |
tacattgttcaaaattcatggtggaaagccgacatctcaatgccctttgttatagaaatttttacagcaaatccatagatgtaatcacgtgttctatcag |
45144126 |
T |
|
| Q |
304 |
aattttggttcttgtagtgaggtcgtttgtatctgttatttggatacaaacttaacgctttgatgaaactctcaaaattaataacactaaaacatatttt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144125 |
aattttggttcttgtagtgaggtcgtttgtatctgttatttggatacaaacttaacgctttgatgaaactctcaaaattaataacactaaaacatatttt |
45144026 |
T |
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| Q |
404 |
caatttgtgggataaggttatttttaaattgtagctgcactatatttttcttaccattgtcgtgtgagaatctataattttctcttacactcatggaact |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144025 |
taatttgtgggataaggttatttttaaattgtagctgcactatatttttcttaccattgtcgtgtgagaatctataattttctcttacactcatggaact |
45143926 |
T |
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| Q |
504 |
gtttg |
508 |
Q |
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| T |
45143925 |
gtttg |
45143921 |
T |
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