View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13488_low_2 (Length: 495)

Name: NF13488_low_2
Description: NF13488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13488_low_2
NF13488_low_2
[»] chr6 (17 HSPs)
chr6 (164-479)||(5142578-5142895)
chr6 (8-60)||(23925334-23925386)
chr6 (8-59)||(5004061-5004112)
chr6 (8-59)||(5489133-5489184)
chr6 (8-59)||(5994699-5994750)
chr6 (13-60)||(30824548-30824595)
chr6 (8-59)||(33298085-33298136)
chr6 (13-59)||(25550295-25550341)
chr6 (13-59)||(35091695-35091741)
chr6 (8-61)||(25506555-25506608)
chr6 (8-60)||(11279836-11279888)
chr6 (8-59)||(13825703-13825754)
chr6 (8-59)||(15391625-15391676)
chr6 (8-57)||(25991852-25991901)
chr6 (8-59)||(13490193-13490244)
chr6 (26-59)||(11053702-11053735)
chr6 (69-153)||(3674040-3674124)
[»] chr5 (17 HSPs)
chr5 (8-60)||(29186292-29186344)
chr5 (8-59)||(24956860-24956911)
chr5 (8-59)||(24965323-24965374)
chr5 (84-153)||(32161799-32161868)
chr5 (8-60)||(31421788-31421840)
chr5 (8-59)||(1728173-1728224)
chr5 (13-60)||(19223554-19223601)
chr5 (8-59)||(20372927-20372978)
chr5 (8-59)||(20398649-20398700)
chr5 (8-59)||(28843940-28843991)
chr5 (8-59)||(28852550-28852601)
chr5 (8-59)||(43598060-43598111)
chr5 (8-59)||(43603552-43603603)
chr5 (8-59)||(43609044-43609095)
chr5 (8-60)||(31410889-31410941)
chr5 (8-59)||(23350090-23350141)
chr5 (32-61)||(29188491-29188520)
[»] scaffold0497 (1 HSPs)
scaffold0497 (8-60)||(10992-11044)
[»] scaffold0111 (1 HSPs)
scaffold0111 (13-61)||(33033-33081)
[»] scaffold0002 (1 HSPs)
scaffold0002 (8-60)||(121227-121279)
[»] chr8 (11 HSPs)
chr8 (8-60)||(17683810-17683862)
chr8 (8-60)||(17973564-17973616)
chr8 (8-60)||(26876068-26876120)
chr8 (8-60)||(30938281-30938333)
chr8 (8-59)||(17664654-17664705)
chr8 (8-59)||(26873618-26873669)
chr8 (8-60)||(1407087-1407139)
chr8 (8-59)||(39837576-39837627)
chr8 (8-59)||(39845619-39845670)
chr8 (8-60)||(25579826-25579878)
chr8 (8-59)||(4839796-4839847)
[»] chr7 (10 HSPs)
chr7 (8-60)||(12978454-12978506)
chr7 (8-59)||(4941591-4941642)
chr7 (8-59)||(18304406-18304457)
chr7 (8-59)||(10439937-10439988)
chr7 (8-59)||(4952411-4952462)
chr7 (8-59)||(13831500-13831551)
chr7 (8-59)||(13839531-13839582)
chr7 (8-60)||(30244774-30244826)
chr7 (8-60)||(30245567-30245619)
chr7 (8-60)||(30255412-30255463)
[»] chr4 (9 HSPs)
chr4 (13-61)||(8103107-8103155)
chr4 (8-60)||(21532318-21532370)
chr4 (8-59)||(12996476-12996527)
chr4 (8-59)||(52295604-52295655)
chr4 (13-59)||(8094301-8094347)
chr4 (8-60)||(10638327-10638379)
chr4 (8-60)||(27343705-27343757)
chr4 (8-60)||(12428492-12428544)
chr4 (8-59)||(4523694-4523745)
[»] chr2 (22 HSPs)
chr2 (8-60)||(14582924-14582976)
chr2 (8-60)||(15953086-15953138)
chr2 (8-59)||(15944571-15944622)
chr2 (8-59)||(20372327-20372378)
chr2 (8-59)||(20621518-20621569)
chr2 (8-59)||(35138593-35138644)
chr2 (8-59)||(35146929-35146980)
chr2 (8-59)||(41233858-41233909)
chr2 (13-59)||(17687417-17687463)
chr2 (8-60)||(38168371-38168423)
chr2 (8-60)||(44372704-44372756)
chr2 (8-60)||(44388615-44388667)
chr2 (13-60)||(25483600-25483647)
chr2 (13-60)||(25491206-25491253)
chr2 (8-59)||(42565943-42565994)
chr2 (8-59)||(42574567-42574618)
chr2 (26-60)||(42249487-42249521)
chr2 (8-59)||(24285696-24285747)
chr2 (8-59)||(24292372-24292423)
chr2 (8-63)||(26903347-26903402)
chr2 (8-59)||(34070618-34070669)
chr2 (32-60)||(21322848-21322876)
[»] chr1 (12 HSPs)
chr1 (8-60)||(35104078-35104130)
chr1 (8-59)||(31539954-31540005)
chr1 (8-59)||(31548523-31548574)
chr1 (8-59)||(3432904-3432955)
chr1 (8-59)||(29221502-29221553)
chr1 (8-63)||(32137768-32137823)
chr1 (26-59)||(21498930-21498963)
chr1 (8-60)||(44320206-44320258)
chr1 (26-60)||(20314059-20314093)
chr1 (13-59)||(41746712-41746758)
chr1 (32-60)||(22646705-22646733)
chr1 (29-57)||(28457556-28457584)
[»] scaffold0156 (1 HSPs)
scaffold0156 (8-59)||(35370-35421)
[»] scaffold0039 (1 HSPs)
scaffold0039 (8-63)||(40847-40902)
[»] scaffold0016 (1 HSPs)
scaffold0016 (8-59)||(23464-23515)
[»] chr3 (19 HSPs)
chr3 (8-59)||(17628265-17628316)
chr3 (8-59)||(28470231-28470282)
chr3 (8-59)||(50824352-50824403)
chr3 (8-59)||(50851457-50851508)
chr3 (8-59)||(8154658-8154709)
chr3 (8-59)||(9525448-9525499)
chr3 (8-59)||(41006556-41006607)
chr3 (8-59)||(41015336-41015387)
chr3 (13-59)||(9555127-9555173)
chr3 (13-59)||(14538624-14538670)
chr3 (13-59)||(27341354-27341400)
chr3 (13-60)||(30495-30542)
chr3 (8-59)||(2211239-2211290)
chr3 (8-59)||(8197710-8197761)
chr3 (8-59)||(17919199-17919250)
chr3 (8-59)||(17933655-17933706)
chr3 (8-60)||(18039010-18039062)
chr3 (164-209)||(9668699-9668744)
chr3 (32-60)||(21186746-21186774)
[»] scaffold0048 (1 HSPs)
scaffold0048 (13-59)||(7648-7694)
[»] scaffold0209 (1 HSPs)
scaffold0209 (8-60)||(98-150)
[»] scaffold0083 (1 HSPs)
scaffold0083 (8-60)||(15812-15864)
[»] scaffold1487 (1 HSPs)
scaffold1487 (13-61)||(762-811)
[»] scaffold0431 (1 HSPs)
scaffold0431 (8-60)||(138-190)
[»] scaffold0991 (1 HSPs)
scaffold0991 (8-59)||(387-438)
[»] scaffold0173 (1 HSPs)
scaffold0173 (8-59)||(943-994)
[»] scaffold0632 (1 HSPs)
scaffold0632 (13-63)||(4386-4436)
[»] scaffold0015 (1 HSPs)
scaffold0015 (26-59)||(192528-192561)
[»] scaffold0863 (1 HSPs)
scaffold0863 (8-59)||(386-437)
[»] scaffold0044 (1 HSPs)
scaffold0044 (8-59)||(81800-81851)
[»] scaffold0027 (1 HSPs)
scaffold0027 (24-59)||(65708-65743)
[»] scaffold0170 (1 HSPs)
scaffold0170 (13-59)||(7209-7255)
[»] scaffold0222 (1 HSPs)
scaffold0222 (30-59)||(20518-20547)
[»] scaffold0391 (1 HSPs)
scaffold0391 (33-61)||(2-30)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 164 - 479
Target Start/End: Complemental strand, 5142895 - 5142578
Alignment:
Q  164 ctcttcaagaacatttcggctaaaagaaatttccaacttatccaaattaatgagtttgccagtaattgtctggtatagcttaagtacctcattaacattt 263  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||| ||||    
T  5142895 ctcttcaagaacatttcggctaaaagaaatttccgacttatccagattaatgagtttggcagaaattgtttggtatagcttaagtacctcattaatattt 5142796  T
Q  264 tgagcattctgatggcaatccctacataaaataaggctatcatcagcnnnnnnn--gagatgggtaatacttggcgctcctctagctattttcaatccat 361  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||         |||||||||||||||||| |||||||||||||||||||||||||    
T  5142795 tgagcattctaatggcaatccctacataaaataaggctatcatcagctaaaaaaaagagatgggtaatacttggtgctcctctagctattttcaatccat 5142696  T
Q  362 gtaaaacattttcatcttgggctctggtgagaaggcttgaaaacacctctgcacaaat-attaacaaataggtgataaggggtccccttggcgtaaacca 460  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||    
T  5142695 gtaaaacattttcatcttgggctctggtgagaa-gcttaaaaacacctctgcacaaataataaacaaataggtgataaggggtccccttgacgtaaacca 5142597  T
Q  461 cgctttggagagaaatttt 479  Q
    | |||||||||||||||||    
T  5142596 ctctttggagagaaatttt 5142578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 23925386 - 23925334
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  23925386 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacaa 23925334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 5004112 - 5004061
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  5004112 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 5004061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 5489133 - 5489184
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  5489133 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 5489184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 5994750 - 5994699
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  5994750 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 5994699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 30824548 - 30824595
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  30824548 aaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacaa 30824595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 33298136 - 33298085
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  33298136 cgaataaaatgggtaaggatagagaaaagtggtcaaaagttggggtatgaca 33298085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 25550341 - 25550295
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  25550341 aaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 25550295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 35091695 - 35091741
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  35091695 aaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35091741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 25506555 - 25506608
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaaa 61  Q
    |||| |||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  25506555 cgaataaaatgggtaagaatagagaaaagtgatcaaaatttggggtatgacaaa 25506608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 11279888 - 11279836
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  11279888 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgacaa 11279836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 13825754 - 13825703
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  13825754 cgaataaaatgggtaagaatagagaaaagtgatcaaaatttggggtatgaca 13825703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 15391625 - 15391676
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||| |||||||||||||||||||||||||||||| |||||||    
T  15391625 cgaataaaatgggcaaggatagagaaaagtggtcaaaatttgggatatgaca 15391676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 25991901 - 25991852
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatga 57  Q
    |||| |||||||||||| |||||||||||||||||| |||||||||||||    
T  25991901 cgaataaaatgggtaagaatagagaaaagtggtcaacatttggggtatga 25991852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 13490244 - 13490193
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| ||||||| |||  ||||||||||||||||||||||||||||||||||    
T  13490244 cgaataaaatggataaaaatagagaaaagtggtcaaaatttggggtatgaca 13490193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 11053735 - 11053702
Alignment:
Q  26 atagagaaaagtggtcaaaatttggggtatgaca 59  Q
    ||||| ||||||||||||||||||||||||||||    
T  11053735 atagaaaaaagtggtcaaaatttggggtatgaca 11053702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 3674040 - 3674124
Alignment:
Q  69 tgttttgaacgaccaacaaaagttggtaaacccaaatatttcaaatgacattcaacggccttaatttgcattcaactttggaaca 153  Q
    |||||||| || || ||||||  |||||||||||| |||||| ||||||| || |   ||||||||||||| |||||||| ||||    
T  3674040 tgttttgatcgccccacaaaaactggtaaacccaagtatttcgaatgacactccagaaccttaatttgcatccaactttgcaaca 3674124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 29186292 - 29186344
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29186292 cgaataaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 29186344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 24956860 - 24956911
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  24956860 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 24956911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 24965323 - 24965374
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  24965323 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 24965374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 32161799 - 32161868
Alignment:
Q  84 acaaaagttggtaaacccaaatatttcaaatgacattcaacggccttaatttgcattcaactttggaaca 153  Q
    ||||||| |||||||||||| |||||| ||||||| || ||| ||||||||||||| |||||||||||||    
T  32161799 acaaaagctggtaaacccaagtatttcgaatgacactccacgaccttaatttgcatccaactttggaaca 32161868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 31421840 - 31421788
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  31421840 cgaataaaatgggtaagaatagagaaaagtggtcaaaattttgggtatgacaa 31421788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 1728173 - 1728224
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  1728173 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 1728224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 19223601 - 19223554
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  19223601 aaaatggataagaatagagaaaagtggtcaaaatttggggtatgacaa 19223554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 20372927 - 20372978
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  20372927 cgaataaaatcggtaagaatagagaaaagtggtcaaaatttggggtatgaca 20372978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 20398649 - 20398700
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  20398649 cgaataaaatcggtaagaatagagaaaagtggtcaaaatttggggtatgaca 20398700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 28843991 - 28843940
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  28843991 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 28843940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 28852601 - 28852550
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  28852601 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 28852550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 43598060 - 43598111
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  43598060 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 43598111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 43603552 - 43603603
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  43603552 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 43603603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 43609044 - 43609095
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  43609044 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 43609095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 31410941 - 31410889
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| ||||||||| || ||||||||| |||||||||||||||||||||||||    
T  31410941 cgaataaaatgggttagaatagagaaatgtggtcaaaatttggggtatgacaa 31410889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 23350090 - 23350141
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||  |||||||||| |||||||||||||||||||||||    
T  23350090 cgaataaaatgggtaaaaatagagaaaaatggtcaaaatttggggtatgaca 23350141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 29188520 - 29188491
Alignment:
Q  32 aaaagtggtcaaaatttggggtatgacaaa 61  Q
    ||||||||||||||||||||||||||||||    
T  29188520 aaaagtggtcaaaatttggggtatgacaaa 29188491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 11044 - 10992
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  11044 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacaa 10992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 33081 - 33033
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaaa 61  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33081 aaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacaaa 33033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 121279 - 121227
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  121279 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacaa 121227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 17683810 - 17683862
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  17683810 cgaataaaatgggcaaggatagagaaaagtggtcaaaatttggggtatgacaa 17683862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 17973616 - 17973564
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  17973616 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacaa 17973564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 26876068 - 26876120
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  26876068 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacaa 26876120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 30938333 - 30938281
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  30938333 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacaa 30938281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 17664654 - 17664705
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  17664654 cgaataaaatgggcaaggatagagaaaagtggtcaaaatttggggtatgaca 17664705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 26873618 - 26873669
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  26873618 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 26873669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 1407087 - 1407139
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  1407087 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgacaa 1407139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 39837576 - 39837627
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  39837576 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 39837627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 39845619 - 39845670
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  39845619 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 39845670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 25579826 - 25579878
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  25579826 cgaataaaatgggtaagaatagataaaagtggtcaaaatttagggtatgacaa 25579878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 4839796 - 4839847
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| ||||| |||||| ||||||||||| ||||||||||||||||||||||    
T  4839796 cgaataaaataggtaagaatagagaaaagcggtcaaaatttggggtatgaca 4839847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 12978506 - 12978454
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  12978506 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacaa 12978454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 4941591 - 4941642
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  4941591 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 4941642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 18304406 - 18304457
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  18304406 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 18304457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 10439988 - 10439937
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||||||||    
T  10439988 cgaataaaatgggcaagaatagagaaaagtggtcaaaatttggggtatgaca 10439937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 4952411 - 4952462
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||| |||||||||||||||||| |||||||||    
T  4952411 cgaataaaatgggtaagaatagataaaagtggtcaaaatttgaggtatgaca 4952462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 13831551 - 13831500
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| |||||| |||||||||||||||| ||||||||||    
T  13831551 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttagggtatgaca 13831500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 13839582 - 13839531
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| ||||||| |||| |||||| |||||||||||||||||||||||||||    
T  13839582 cgaataaaatggataagaatagaggaaagtggtcaaaatttggggtatgaca 13839531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 30244826 - 30244774
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| ||||||| |||  |||||||||||||||||||||||| ||||||||||    
T  30244826 cgaataaaatggataaaaatagagaaaagtggtcaaaatttgaggtatgacaa 30244774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 30245619 - 30245567
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| ||||||| |||  |||||||||||||||||||| || |||||||||||    
T  30245619 cgaataaaatggataaaaatagagaaaagtggtcaaaaatttgggtatgacaa 30245567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 30255463 - 30255412
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| ||||||| |||  ||||||||||||||||||||||| |||||||||||    
T  30255463 cgaataaaatggataaaaatagagaaaagtggtcaaaattt-gggtatgacaa 30255412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 8103107 - 8103155
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaaa 61  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8103107 aaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacaaa 8103155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 21532318 - 21532370
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21532318 cgaataaaatggataaggatagagaaaagtggtcaaaatttggggtatgacaa 21532370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 12996527 - 12996476
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  12996527 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 12996476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 52295655 - 52295604
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  52295655 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 52295604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 8094301 - 8094347
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  8094301 aaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 8094347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 10638379 - 10638327
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||  |||||||||||||||||||||||||||||||||||    
T  10638379 cgaataaaatgggtaaaaatagagaaaagtggtcaaaatttggggtatgacaa 10638327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 27343705 - 27343757
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||  |||||||||||||||||||||||||||||||||||    
T  27343705 cgaataaaatgggtaaaaatagagaaaagtggtcaaaatttggggtatgacaa 27343757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 12428492 - 12428544
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| ||||||||||   |||||||||||||||||||||||||||||||||||    
T  12428492 cgaataaaatgggtagaaatagagaaaagtggtcaaaatttggggtatgacaa 12428544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 4523694 - 4523745
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| ||||||| |||| |||||| |||||||||||||||||||||||||||    
T  4523694 cgaataaaatggataagaatagaggaaagtggtcaaaatttggggtatgaca 4523745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 14582976 - 14582924
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  14582976 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacaa 14582924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 15953086 - 15953138
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  15953086 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacaa 15953138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 15944571 - 15944622
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  15944571 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 15944622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 20372327 - 20372378
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  20372327 cgaataaaatgggcaaggatagagaaaagtggtcaaaatttggggtatgaca 20372378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 20621569 - 20621518
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  20621569 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 20621518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 35138644 - 35138593
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  35138644 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35138593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 35146980 - 35146929
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  35146980 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35146929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 41233858 - 41233909
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  41233858 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 41233909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 17687417 - 17687463
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  17687417 aaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 17687463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 38168371 - 38168423
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  38168371 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggagtatgacaa 38168423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 44372756 - 44372704
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  44372756 cgaataaaatgggtaaagatagaaaaaagtggtcaaaatttggggtatgacaa 44372704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 44388667 - 44388615
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  44388667 cgaataaaatgggtaaagatagaaaaaagtggtcaaaatttggggtatgacaa 44388615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 25483647 - 25483600
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  25483647 aaaatggataagaatagagaaaagtggtcaaaatttggggtatgacaa 25483600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 25491253 - 25491206
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  25491253 aaaatggataagaatagagaaaagtggtcaaaatttggggtatgacaa 25491206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 42565943 - 42565994
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  42565943 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 42565994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 42574567 - 42574618
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  42574567 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 42574618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 42249487 - 42249521
Alignment:
Q  26 atagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||||||||||||||||||||||||||||||||||    
T  42249487 atagagaaaagtggtcaaaatttggggtatgacaa 42249521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 24285747 - 24285696
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||| ||||  ||| ||||||||||||||||||||||||||||||    
T  24285747 cgaacaaaatgtgtaaaaataaagaaaagtggtcaaaatttggggtatgaca 24285696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 24292423 - 24292372
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||| ||||  ||| ||||||||||||||||||||||||||||||    
T  24292423 cgaacaaaatgtgtaaaaataaagaaaagtggtcaaaatttggggtatgaca 24292372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 26903347 - 26903402
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaaata 63  Q
    |||| |||||| ||||  ||||||||||||||||||||||| |||||||| |||||    
T  26903347 cgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttagggtatgataaata 26903402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 34070618 - 34070669
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||| ||||  ||||||||||||| ||||||||||||||||||||    
T  34070618 cgaacaaaatgtgtaaaaatagagaaaagtgatcaaaatttggggtatgaca 34070669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 21322848 - 21322876
Alignment:
Q  32 aaaagtggtcaaaatttggggtatgacaa 60  Q
    |||||||||||||||||||||||||||||    
T  21322848 aaaagtggtcaaaatttggggtatgacaa 21322876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 35104078 - 35104130
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  35104078 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacaa 35104130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 31540005 - 31539954
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  31540005 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 31539954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 31548574 - 31548523
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  31548574 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 31548523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 3432904 - 3432955
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  3432904 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 3432955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 29221502 - 29221553
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||  |||||||||||| |||||||||||||||||||||    
T  29221502 cgaataaaatgggtaaaaatagagaaaagtagtcaaaatttggggtatgaca 29221553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 32137768 - 32137823
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaaata 63  Q
    |||| ||||||| |||| ||||||||||||| ||||||||||||||| ||||||||    
T  32137768 cgaataaaatggataagaatagagaaaagtgatcaaaatttggggtaagacaaata 32137823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 21498930 - 21498963
Alignment:
Q  26 atagagaaaagtggtcaaaatttggggtatgaca 59  Q
    ||||||||||||||||||||||||||||||||||    
T  21498930 atagagaaaagtggtcaaaatttggggtatgaca 21498963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 44320206 - 44320258
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||  |  ||||||||||||||||||||||||||||||||    
T  44320206 cgaataaaatgggtaaaaagcgagaaaagtggtcaaaatttggggtatgacaa 44320258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 20314059 - 20314093
Alignment:
Q  26 atagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    ||||| |||||||||||||||||||||||||||||    
T  20314059 atagaaaaaagtggtcaaaatttggggtatgacaa 20314093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 41746712 - 41746758
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    ||||||| |||| ||||| |||||||||||||||||||| |||||||    
T  41746712 aaaatggataagaatagataaaagtggtcaaaatttgggatatgaca 41746758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 22646733 - 22646705
Alignment:
Q  32 aaaagtggtcaaaatttggggtatgacaa 60  Q
    |||||||||||||||||||||||||||||    
T  22646733 aaaagtggtcaaaatttggggtatgacaa 22646705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 28457584 - 28457556
Alignment:
Q  29 gagaaaagtggtcaaaatttggggtatga 57  Q
    |||||||||||||||||||||||||||||    
T  28457584 gagaaaagtggtcaaaatttggggtatga 28457556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 35370 - 35421
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  35370 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 40847 - 40902
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaaata 63  Q
    |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  40847 cgaataaaatggataagaatagagaaaagtggtcaaaatttggggtatgacaaata 40902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 23515 - 23464
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  23515 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 23464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 17628316 - 17628265
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  17628316 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 17628265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 28470231 - 28470282
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  28470231 cgaataaaatggataaggatagagaaaagtggtcaaaatttggggtatgaca 28470282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 50824403 - 50824352
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  50824403 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 50824352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 50851457 - 50851508
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  50851457 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 50851508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 8154658 - 8154709
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  8154658 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 8154709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 9525448 - 9525499
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  9525448 cgaataaaatgggtaagaatagagaaaagtgatcaaaatttggggtatgaca 9525499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 41006607 - 41006556
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||||    
T  41006607 cgaataaaatgggtaagaatagagaaaaatggtcaaaatttggggtatgaca 41006556  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 41015387 - 41015336
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||||    
T  41015387 cgaataaaatgggtaagaatagagaaaaatggtcaaaatttggggtatgaca 41015336  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 9555127 - 9555173
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  9555127 aaaatgggtaagaatagagaaaagtgatcaaaatttggggtatgaca 9555173  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 14538624 - 14538670
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||    
T  14538624 aaaatggataagaatagagaaaagtggtcaaaatttggggtatgaca 14538670  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 27341354 - 27341400
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||    
T  27341354 aaaatggataagaatagagaaaagtggtcaaaatttggggtatgaca 27341400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 30495 - 30542
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||||| ||||  |||||||||||||||||||||||||||||||||||    
T  30495 aaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgacaa 30542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 2211290 - 2211239
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| ||||| |||||| ||||||||||||||||||||||| ||||||||||    
T  2211290 cgaataaaataggtaagaatagagaaaagtggtcaaaatttagggtatgaca 2211239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 8197710 - 8197761
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||| ||||  ||||||||||||||||||||||||||||||||||    
T  8197710 cgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 8197761  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 17919250 - 17919199
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| ||||||| |||  ||||||||||||||||||||||||||||||||||    
T  17919250 cgaataaaatggataaaaatagagaaaagtggtcaaaatttggggtatgaca 17919199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 17933706 - 17933655
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||  |||||||||| |||||||||||||||||||||||    
T  17933706 cgaataaaatgggtaaaaatagagaaaattggtcaaaatttggggtatgaca 17933655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 18039062 - 18039010
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||  |  ||||||||||||||||||||||||||||||||    
T  18039062 cgaataaaatgggtaaaaagcgagaaaagtggtcaaaatttggggtatgacaa 18039010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 9668699 - 9668744
Alignment:
Q  164 ctcttcaagaacatttcggctaaaagaaatttccaacttatccaaa 209  Q
    |||||||| ||||||||||||||| ||||||||| |||| ||||||    
T  9668699 ctcttcaaaaacatttcggctaaaggaaatttccgacttgtccaaa 9668744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 21186774 - 21186746
Alignment:
Q  32 aaaagtggtcaaaatttggggtatgacaa 60  Q
    |||||||||||||||||||||||||||||    
T  21186774 aaaagtggtcaaaatttggggtatgacaa 21186746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 7648 - 7694
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  7648 aaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 7694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 98 - 150
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  98 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgacaa 150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 15864 - 15812
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| |||||||||||  |||||||||||||||||||||||||||||||||||    
T  15864 cgaataaaatgggtaaaaatagagaaaagtggtcaaaatttggggtatgacaa 15812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1487 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 762 - 811
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaattt-ggggtatgacaaa 61  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  762 aaaatgggtaagaatagagaaaagtggtcaaaatttgggggtatgacaaa 811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 190 - 138
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaa 60  Q
    |||| ||||||||||   |||||||||||||||||||||||||||||||||||    
T  190 cgaataaaatgggtagaaatagagaaaagtggtcaaaatttggggtatgacaa 138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 387 - 438
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||| ||||  ||||||||||||||||||||||||||||||||||    
T  387 cgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 943 - 994
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||||||||| |||||||||  |||||||||||||||||||||||    
T  943 cgaataaaatgggtaagaatagagaaagctggtcaaaatttggggtatgaca 994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 4436 - 4386
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgacaaata 63  Q
    |||||||||||| ||||||||||   |||||||||||||||||||||||||    
T  4436 aaaatgggtaagaatagagaaaaaatgtcaaaatttggggtatgacaaata 4386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 192561 - 192528
Alignment:
Q  26 atagagaaaagtggtcaaaatttggggtatgaca 59  Q
    ||||||||||||||||||||||||||||||||||    
T  192561 atagagaaaagtggtcaaaatttggggtatgaca 192528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 386 - 437
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||| ||||  ||| ||||||||||||||||||||||||||||||    
T  386 cgaacaaaatgtgtaaaaataaagaaaagtggtcaaaatttggggtatgaca 437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 81800 - 81851
Alignment:
Q  8 cgaagaaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||| |||||| ||||  ||||||||||||||||||||||| ||||||||||    
T  81800 cgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttagggtatgaca 81851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 65708 - 65743
Alignment:
Q  24 ggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    ||||||||||||||||||||||||| ||||||||||    
T  65708 ggatagagaaaagtggtcaaaatttagggtatgaca 65743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 7209 - 7255
Alignment:
Q  13 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 59  Q
    |||||||||||  | ||||||||||||||||||||| ||||||||||    
T  7209 aaaatgggtaaaaacagagaaaagtggtcaaaatttagggtatgaca 7255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 20518 - 20547
Alignment:
Q  30 agaaaagtggtcaaaatttggggtatgaca 59  Q
    ||||||||||||||||||||||||||||||    
T  20518 agaaaagtggtcaaaatttggggtatgaca 20547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 2 - 30
Alignment:
Q  33 aaagtggtcaaaatttggggtatgacaaa 61  Q
    |||||||||||||||||||||||||||||    
T  2 aaagtggtcaaaatttggggtatgacaaa 30  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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