View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13489_high_1 (Length: 718)

Name: NF13489_high_1
Description: NF13489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13489_high_1
NF13489_high_1
[»] chr7 (24 HSPs)
chr7 (48-331)||(30089321-30089616)
chr7 (328-552)||(30089690-30089914)
chr7 (350-516)||(26608496-26608662)
chr7 (554-708)||(30089880-30090030)
chr7 (350-516)||(26619061-26619225)
chr7 (350-516)||(26621048-26621214)
chr7 (366-516)||(9242441-9242591)
chr7 (373-516)||(4685360-4685503)
chr7 (366-516)||(26224935-26225085)
chr7 (366-516)||(26205372-26205522)
chr7 (372-497)||(20277336-20277461)
chr7 (366-516)||(10022117-10022267)
chr7 (390-497)||(16086504-16086611)
chr7 (352-476)||(29932346-29932469)
chr7 (366-481)||(16170264-16170379)
chr7 (402-475)||(27135958-27136031)
chr7 (352-513)||(3234306-3234467)
chr7 (373-497)||(8241598-8241721)
chr7 (385-446)||(3374313-3374374)
chr7 (352-413)||(14803120-14803181)
chr7 (352-413)||(15250114-15250175)
chr7 (373-486)||(3364982-3365096)
chr7 (352-469)||(24731759-24731876)
chr7 (357-469)||(7711361-7711473)
[»] chr2 (15 HSPs)
chr2 (346-516)||(24479125-24479295)
chr2 (353-513)||(7702409-7702569)
chr2 (373-516)||(31342673-31342816)
chr2 (366-516)||(30266996-30267146)
chr2 (357-497)||(11017441-11017581)
chr2 (373-515)||(40016591-40016734)
chr2 (366-493)||(44920951-44921077)
chr2 (351-513)||(22966501-22966665)
chr2 (368-493)||(7718180-7718305)
chr2 (368-516)||(15513662-15513810)
chr2 (352-507)||(41573372-41573527)
chr2 (352-455)||(15540317-15540420)
chr2 (354-512)||(26734732-26734887)
chr2 (361-495)||(27151215-27151343)
chr2 (373-469)||(45404711-45404807)
[»] chr3 (22 HSPs)
chr3 (352-513)||(9633402-9633563)
chr3 (366-516)||(13845985-13846135)
chr3 (375-516)||(2550168-2550309)
chr3 (366-516)||(1627904-1628054)
chr3 (373-516)||(7407711-7407854)
chr3 (352-515)||(5498457-5498619)
chr3 (378-516)||(2943171-2943309)
chr3 (373-516)||(1654576-1654719)
chr3 (353-495)||(26707839-26707981)
chr3 (351-516)||(27259411-27259567)
chr3 (378-507)||(36035294-36035423)
chr3 (352-513)||(36035451-36035604)
chr3 (441-516)||(28745043-28745118)
chr3 (352-490)||(16457314-16457452)
chr3 (374-512)||(2179926-2180066)
chr3 (373-469)||(1613217-1613313)
chr3 (423-513)||(26735684-26735774)
chr3 (355-507)||(27713405-27713554)
chr3 (390-516)||(35082993-35083119)
chr3 (352-444)||(36034998-36035090)
chr3 (373-469)||(23358460-23358556)
chr3 (373-469)||(23363281-23363377)
[»] chr8 (22 HSPs)
chr8 (352-516)||(6801787-6801951)
chr8 (352-513)||(14997600-14997761)
chr8 (375-516)||(45356069-45356210)
chr8 (349-498)||(25637620-25637769)
chr8 (373-493)||(25638807-25638927)
chr8 (373-493)||(28249055-28249175)
chr8 (366-516)||(17634428-17634578)
chr8 (352-516)||(5650902-5651066)
chr8 (366-516)||(19369867-19370017)
chr8 (366-516)||(5528736-5528886)
chr8 (366-516)||(19448441-19448591)
chr8 (366-516)||(19532485-19532635)
chr8 (374-505)||(29345432-29345564)
chr8 (411-513)||(6223439-6223541)
chr8 (366-497)||(18766910-18767041)
chr8 (352-490)||(6403572-6403710)
chr8 (351-469)||(29553607-29553725)
chr8 (355-472)||(5000661-5000778)
chr8 (354-497)||(31369082-31369225)
chr8 (352-505)||(31347328-31347481)
chr8 (349-469)||(26173778-26173896)
chr8 (352-409)||(7292813-7292870)
[»] chr1 (15 HSPs)
chr1 (351-516)||(18308126-18308291)
chr1 (352-498)||(12189931-12190077)
chr1 (351-493)||(28636881-28637023)
chr1 (352-516)||(39368596-39368761)
chr1 (366-516)||(51758746-51758896)
chr1 (352-513)||(897434-897594)
chr1 (366-476)||(16222771-16222881)
chr1 (352-458)||(5911679-5911785)
chr1 (402-510)||(1843981-1844089)
chr1 (351-467)||(17112903-17113019)
chr1 (366-442)||(37097371-37097447)
chr1 (394-469)||(3399643-3399718)
chr1 (373-455)||(15214327-15214409)
chr1 (382-477)||(13208621-13208716)
chr1 (394-471)||(15204615-15204692)
[»] chr6 (29 HSPs)
chr6 (373-515)||(16734805-16734947)
chr6 (366-516)||(12591826-12591976)
chr6 (342-516)||(14669303-14669477)
chr6 (356-516)||(23904309-23904469)
chr6 (355-487)||(9631141-9631273)
chr6 (373-493)||(11936747-11936867)
chr6 (373-516)||(15361715-15361858)
chr6 (373-497)||(6684094-6684217)
chr6 (351-497)||(23264472-23264620)
chr6 (366-516)||(17719680-17719830)
chr6 (351-489)||(29667899-29668039)
chr6 (385-493)||(11948727-11948835)
chr6 (352-513)||(4485525-4485686)
chr6 (352-497)||(1942548-1942693)
chr6 (394-505)||(10070676-10070786)
chr6 (374-516)||(34374826-34374970)
chr6 (354-479)||(10935776-10935901)
chr6 (367-464)||(15690432-15690529)
chr6 (361-452)||(4591138-4591229)
chr6 (390-472)||(30481229-30481311)
chr6 (354-416)||(6673675-6673737)
chr6 (352-471)||(28736608-28736729)
chr6 (373-469)||(2668457-2668553)
chr6 (418-498)||(8496625-8496706)
chr6 (373-469)||(14003873-14003969)
chr6 (373-469)||(27969921-27970017)
chr6 (351-469)||(6346862-6346980)
chr6 (410-455)||(2941043-2941088)
chr6 (410-475)||(11655033-11655098)
[»] chr5 (26 HSPs)
chr5 (366-516)||(17037536-17037686)
chr5 (373-516)||(5079021-5079164)
chr5 (352-516)||(19984974-19985138)
chr5 (351-516)||(30786245-30786410)
chr5 (352-513)||(31571008-31571173)
chr5 (351-516)||(12042133-12042299)
chr5 (373-516)||(7410824-7410967)
chr5 (366-516)||(23679434-23679584)
chr5 (366-516)||(23855227-23855377)
chr5 (352-469)||(9354393-9354510)
chr5 (352-469)||(9333565-9333682)
chr5 (366-465)||(31068971-31069069)
chr5 (350-512)||(38449930-38450089)
chr5 (352-474)||(10869417-10869537)
chr5 (404-497)||(42076078-42076171)
chr5 (402-497)||(37233061-37233156)
chr5 (352-436)||(18191886-18191970)
chr5 (394-495)||(40401987-40402088)
chr5 (373-469)||(19615036-19615132)
chr5 (355-435)||(16411573-16411652)
chr5 (351-398)||(42076045-42076092)
chr5 (352-469)||(15160366-15160483)
chr5 (360-475)||(11833242-11833354)
chr5 (352-413)||(17535350-17535411)
chr5 (349-469)||(30655180-30655300)
chr5 (354-435)||(14117275-14117356)
[»] chr4 (21 HSPs)
chr4 (352-488)||(4881054-4881190)
chr4 (366-516)||(47065991-47066141)
chr4 (375-516)||(43600269-43600410)
chr4 (360-488)||(4904125-4904253)
chr4 (366-516)||(1684909-1685059)
chr4 (366-516)||(53300344-53300494)
chr4 (352-497)||(24558971-24559116)
chr4 (352-497)||(37750966-37751110)
chr4 (366-516)||(1152037-1152187)
chr4 (394-497)||(21539248-21539350)
chr4 (441-516)||(27739732-27739807)
chr4 (352-417)||(4923689-4923754)
chr4 (382-451)||(48464049-48464118)
chr4 (355-433)||(26075290-26075368)
chr4 (373-469)||(8573166-8573262)
chr4 (373-469)||(8575285-8575381)
chr4 (423-516)||(21317488-21317581)
chr4 (385-448)||(26075222-26075285)
chr4 (418-485)||(32514521-32514588)
chr4 (360-445)||(45641640-45641723)
chr4 (398-475)||(18941656-18941733)
[»] scaffold0684 (1 HSPs)
scaffold0684 (366-516)||(704-854)
[»] scaffold0069 (1 HSPs)
scaffold0069 (366-516)||(40655-40805)
[»] scaffold0576 (1 HSPs)
scaffold0576 (373-516)||(6699-6842)
[»] scaffold0002 (1 HSPs)
scaffold0002 (359-493)||(446263-446397)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 48 - 331
Target Start/End: Original strand, 30089321 - 30089616
Alignment:
Q  48 tttcaaaatgttaatttatggcctttcaggaaaagcaaatgtcaatttgtgaaagtagtaa-----------tcctcaggtgaatagaaacaa-acataa 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||| ||||||||||||| ||||||    
T  30089321 tttcaaaatgttaatttatggcctttcaggaaaagcaaatgtcaatttgtgaaagtagtaaacaactcataatcctcagatgaatagaaacaacacataa 30089420  T
Q  136 gttaactttgagaaggtaatatgtacaagtaagaaatagaaattaaatatactcacaagttttagaaagatgttttcgaaaaagaaataataaaaatccg 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30089421 gttaactttgagaaggtaatatgtacaagtaagaaatagaaattaaatatactcacaagttgtagaaagatgttttcgaaaaagaaataataaaaatccg 30089520  T
Q  236 gatcctccatatccggctttatggcgcacattcgatcaagagaggaaaataactcttcatgatcggttgcatcataagccaggtcgaagaggatcc 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  30089521 gatcctccatatccggctttatggcgcacattcgatcaagagaggaaaataactcttcatgaccggttgcatcataagccaggtcgaagagaatcc 30089616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 328 - 552
Target Start/End: Original strand, 30089690 - 30089914
Alignment:
Q  328 atcccattgtgaaccactatctcacactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatattta 427  Q
    |||||||| |||||||  ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30089690 atcccattatgaaccagcatctcacgctacaaaataattgacatctagtaacacttgaaaactgttactaaatcaagaaaaatgttactgattatattta 30089789  T
Q  428 gtaacatttgaacaattgttaggtaaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagtgnnnnnnngaat 527  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||       ||||    
T  30089790 gtaacatttgaacaattgttaggaaaagcccatgttactaaagagctttagttacattttatagtattatttttaacattcaaaaagtgtctttttgaat 30089889  T
Q  528 gaaatcggctcagtatcatttgaat 552  Q
    |||||| || ||||| |||||||||    
T  30089890 gaaatcagcccagtaacatttgaat 30089914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 350 - 516
Target Start/End: Complemental strand, 26608662 - 26608496
Alignment:
Q  350 cacactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttag 449  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||  |||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  26608662 cacactacaacataattgacatctagtaacatttgaaaattgttatgaaatcaagaaaaatgttactgattaaatttagtaacatttgaacaattgttag 26608563  T
Q  450 gtaaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
     |||||||||||||||||||||| ||||||| |||||||||||| ||| | ||||| ||||||||||    
T  26608562 ataaagcccatgttactaaagagctttagttgcattttatagtactatctataacaatcaaaaagtg 26608496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 554 - 708
Target Start/End: Original strand, 30089880 - 30090030
Alignment:
Q  554 ctttttgaatgaaatcttctcagtaacatttgaatgaagagagctttagttactaaagagctttaatcccatatatatctagtttacttaactgattaac 653  Q
    ||||||||||||||||  | |||||||||||||||||| |||||||||||||||||||||| ||||||||||||    ||||||||||||||||||||||    
T  30089880 ctttttgaatgaaatcagcccagtaacatttgaatgaaaagagctttagttactaaagagccttaatcccatat----ctagtttacttaactgattaac 30089975  T
Q  654 tcagaaatcaaagtttaggaatgaaatttataaatttctaaataagctgatgatg 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30089976 tcagaaatcaaagtttaggaatgaaatttataaatttctaaataagcttatgatg 30090030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 350 - 516
Target Start/End: Complemental strand, 26619225 - 26619061
Alignment:
Q  350 cacactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttag 449  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| ||    
T  26619225 cacactacaacataattgacatctagtaacacttgaaat-tgttactaaatcaagaaaaatgttactgattaaatttattaacatttgaacaattgt-ag 26619128  T
Q  450 gtaaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||| || |||||||||||||  ||||||||||||| |||||||||||| ||||||||||||||||    
T  26619127 gtaaatcctatgttactaaagaactttagttacatttgatagtattatttgtaacattcaaaaagtg 26619061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 350 - 516
Target Start/End: Complemental strand, 26621214 - 26621048
Alignment:
Q  350 cacactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttag 449  Q
    ||||||||||| |||| |||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| |||||| ||||||| ||||||||||||    
T  26621214 cacactacaacttaatggacatctagtaacacttgaaaattgttactaaattaagaaaaatgttactgattaaatttagcaacatttaaacaattgttag 26621115  T
Q  450 gtaaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
     ||||  |||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||    
T  26621114 ataaaagccatgttactaaagagctttagttacattttatagtattatctgtaacattcaaaaagtg 26621048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 9242591 - 9242441
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| ||| |||||||||||| ||| ||||||||||||||||||||||| |||| |||| |||||| ||||||||||||||| ||||| |||||||||    
T  9242591 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgtaacacttgaacaattgttagataaagtccatgttac 9242492  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||||||||||||||||||| | ||||| | ||||||||    
T  9242491 taaagagttttagttacattttatagtattatctataacaattaaaaagtg 9242441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 373 - 516
Target Start/End: Complemental strand, 4685503 - 4685360
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagag 472  Q
    |||||||||||||||| ||| ||||||||||||||| ||||| | |||| |||||| |||| |||||||||||||||||||||||| | ||||||||| |    
T  4685503 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacacttgaacaattgttaggtaaagcccgtattactaaagtg 4685404  T
Q  473 ttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||||||||||||||||||| ||| | ||||| ||||||||||    
T  4685403 ttttagttacattttatagtactatctgtaacaatcaaaaagtg 4685360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 26225085 - 26224935
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| || ||||||||||||| ||| ||||||||||||||| || |||| |||| ||||||||||| |||||||||| ||||||||||||  ||||||    
T  26225085 tgacatttaataacacttgaaaattgtaactaaatcaagaaaaatgatactaattaaatttagtaacacttgaacaattattaggtaaagccggtgttac 26224986  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||||||||||||| ||||||||| || ||  | ||||| ||||||||||    
T  26224985 taaagagttttagtttcattttataatactacctgtaacaatcaaaaagtg 26224935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 26205522 - 26205372
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| |||| ||||||||||| | | ||||||||||||||| ||||||| |||| ||||||||||| ||||| ||||| ||||||||||   ||||||    
T  26205522 tgacatttagtgacacttgaaaattataactaaatcaagaaaaatgttactaattaaatttagtaacacttgaaaaattggtaggtaaagctggtgttac 26205423  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||||||||||||| ||||| |||||| || || ||||| ||||||||||    
T  26205422 taaagagttttagtttcatttgatagtactacttgtaacaatcaaaaagtg 26205372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 372 - 497
Target Start/End: Complemental strand, 20277461 - 20277336
Alignment:
Q  372 ctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaaga 471  Q
    ||||||||||| ||||| ||| |||||||||| |||| | ||| | |||| |||||||||||||| ||||||||||||||||||| | ||||||||||||    
T  20277461 ctagtaacactcgaaaattgtaactaaatcaaaaaaaatattattaattaaatttagtaacatttaaacaattgttaggtaaagcacctgttactaaaga 20277362  T
Q  472 gttttagttacattttatagtattat 497  Q
    | |||||||||||| |||||||||||    
T  20277361 gctttagttacattatatagtattat 20277336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 10022117 - 10022267
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| |||||||| ||||||| ||| |||||||||  |||| ||||||| ||||  ||||||||||  ||||||||||||||||||||| | ||||||    
T  10022117 tgacatttagtaacaattgaaaattgtaactaaatcagaaaaaatgttactaattaagtttagtaacacatgaacaattgttaggtaaagctcgtgttac 10022216  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||| |||||||||||||||||| || ||| | ||||| | ||||||||    
T  10022217 taaagaattttagttacattttatattactatctgtaacaattaaaaagtg 10022267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 390 - 497
Target Start/End: Original strand, 16086504 - 16086611
Alignment:
Q  390 tgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttttagttacattttat 489  Q
    ||||| |||||||  |||| ||||||| |||| ||||| ||||||||||| |||||||||||||||| ||||||||| || || || ||| |||||||||    
T  16086504 tgttattaaatcagaaaaactgttactaattaaatttaataacatttgaataattgttaggtaaagctcatgttacttaatagcttcagtaacattttat 16086603  T
Q  490 agtattat 497  Q
    ||||||||    
T  16086604 agtattat 16086611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 352 - 476
Target Start/End: Complemental strand, 29932469 - 29932346
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||||||||   | |||||||| ||||||| | ||||||||||  ||||| ||||| ||||||||  || ||||||||| |||||||||||||    
T  29932469 cactacaacataattgcgttttagtaacatttgaaaaatattactaaatcgcgaaaaatgtta-tgattataactaataacatttggacaattgttaggt 29932371  T
Q  452 aaagcccatgttactaaagagtttt 476  Q
    |||||| |||  |||||||||||||    
T  29932370 aaagcctatgagactaaagagtttt 29932346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 366 - 481
Target Start/End: Original strand, 16170264 - 16170379
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| ||| |||||||||||| ||| || ||||||  |||| ||||||| |||| ||||||||||| || |||||||||||||||||  | |||||||    
T  16170264 tgacatttagcaacacttgaaaattgtaaccaaatcacaaaaagtgttactaattaaatttagtaacacttaaacaattgttaggtaaaatcaatgttac 16170363  T
Q  466 taaagagttttagtta 481  Q
    || || ||||||||||    
T  16170364 tagagtgttttagtta 16170379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 402 - 475
Target Start/End: Original strand, 27135958 - 27136031
Alignment:
Q  402 aagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttt 475  Q
    ||||||| ||||| ||||||||| || ||||||||||||||||||||| |||||||  ||||||||||||||||    
T  27135958 aagaaaaatgttattgattatatctaataacatttgaacaattgttagataaagcctgtgttactaaagagttt 27136031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 352 - 513
Target Start/End: Original strand, 3234306 - 3234467
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaa-ttgttagg 450  Q
    ||||||| ||||||| | || |||||||| ||||||| ||| ||||||| || |||| || |||| | |  |||||||||||||||| ||| || |||||    
T  3234306 cactacagcataattaagatttagtaacagttgaaaaatgtaactaaataaaaaaaaatggtactaaattaatttagtaacatttgaccaatttattagg 3234405  T
Q  451 taaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaa 513  Q
    ||||| || |||||||||| || || ||| |||||| || ||||||||  |||||||||||||    
T  3234406 taaagtccgtgttactaaatagcttcagtaacatttaat-gtattattagtaacattcaaaaa 3234467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 373 - 497
Target Start/End: Original strand, 8241598 - 8241721
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagag 472  Q
    |||||| ||||| ||| ||| ||||||| |||||||| ||||||||||  ||||| ||| ||||||||| ||||||| ||||  |||||||| ||||||     
T  8241598 tagtaatacttggaaattgtaactaaatgaagaaaat-gttactgattgaatttaataatatttgaacagttgttagataaaatccatgttattaaagaa 8241696  T
Q  473 ttttagttacattttatagtattat 497  Q
     || |||||||| ||||| ||||||    
T  8241697 cttcagttacatattataatattat 8241721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 385 - 446
Target Start/End: Original strand, 3374313 - 3374374
Alignment:
Q  385 aaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgt 446  Q
    |||||| |||| |||||||||||| ||||| |||||| ||| ||||||||||||||||||||    
T  3374313 aaaactattaccaaatcaagaaaaatgttattgattaaattaagtaacatttgaacaattgt 3374374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 14803181 - 14803120
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgtt 413  Q
    |||||||||| |||||| ||||||||||  ||||||| ||| ||||||||||||||| ||||    
T  14803181 cactacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 14803120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 15250175 - 15250114
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgtt 413  Q
    |||||||||| |||||| ||||||||||  ||||||| ||| ||||||||||||||| ||||    
T  15250175 cactacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 15250114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 486
Target Start/End: Original strand, 3364982 - 3365096
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaa-aattgttactgattatatttagtaacatttgaacaattgttaggtaaagccc-atgttactaaag 470  Q
    ||||||||||| |||| ||| |||||||||| || ||||||||||  ||| || | |||||||||| |||| |||||||||||||||  ||||||||||     
T  3364982 tagtaacactttaaaattgtaactaaatcaaaaacaattgttactatttagatcttgtaacatttg-acaaatgttaggtaaagcccggtgttactaaat 3365080  T
Q  471 agttttagttacattt 486  Q
      ||||||| ||||||    
T  3365081 gattttagtaacattt 3365096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 352 - 469
Target Start/End: Complemental strand, 24731876 - 24731759
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaa-aattgttactgattatatttagtaacatttgaacaattgttagg 450  Q
    ||||||||||||  ||| || ||||||||||| |||| ||| | |||||||| || || |||||||  ||| || | |||||||||||  ||| ||||||    
T  24731876 cactacaacatatatgagatttagtaacacttcaaaattgtaattaaatcaaaaataaatgttactatttagatcttgtaacatttgataaat-gttagg 24731778  T
Q  451 taaagcccatgttactaaa 469  Q
    |||| ||||||||||||||    
T  24731777 taaaacccatgttactaaa 24731759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 469
Target Start/End: Complemental strand, 7711473 - 7711361
Alignment:
Q  357 caacataattgacatctagtaacacttgaaaactgttactaaatcaagaa-aattgttactgattatatttagtaacatttgaacaattgttaggtaaag 455  Q
    |||||||| ||| || |||||||||||  ||| ||| |||||||||| || || |||||||  ||| || | |||||||||||  ||| |||||||||||    
T  7711473 caacataaatgagatttagtaacacttctaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacatttgatgaat-gttaggtaaag 7711375  T
Q  456 cccatgttactaaa 469  Q
    ||| ||||||||||    
T  7711374 cccgtgttactaaa 7711361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 7e-51; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 346 - 516
Target Start/End: Original strand, 24479125 - 24479295
Alignment:
Q  346 atctcacactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattg 445  Q
    |||| |||||| ||||||||||| || |||||||||||||||| | |||||||||||||| || ||||||| |||| ||||||||||||||||||||||     
T  24479125 atcttacactataacataattgagatatagtaacacttgaaaattattactaaatcaagataactgttactaattaaatttagtaacatttgaacaattc 24479224  T
Q  446 ttaggtaaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||||||||| | ||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||||    
T  24479225 ttaggtaaagctcgtgttactaaagagctttagttatattttatagtattatctataacattcaaaaagtg 24479295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 353 - 513
Target Start/End: Original strand, 7702409 - 7702569
Alignment:
Q  353 actacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggta 452  Q
    ||||||||||||||||||||||||||||| |||||| | ||||||||| || |||| ||||| | |||| | ||||||||||||| ||||||||||||||    
T  7702409 actacaacataattgacatctagtaacacatgaaaattattactaaattaaaaaaaatgttattaattaaaattagtaacatttgtacaattgttaggta 7702508  T
Q  453 aagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaa 513  Q
    |||||||| ||||||||||| |||||||||||||| ||||||||| | ||||||| |||||    
T  7702509 aagcccatattactaaagagctttagttacattttgtagtattatctgtaacatttaaaaa 7702569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 373 - 516
Target Start/End: Complemental strand, 31342816 - 31342673
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagag 472  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||| |||| |||||| |||| ||||||||||||||| |||||||| ||||||||||| |    
T  31342816 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtg 31342717  T
Q  473 ttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||||||||||||||||||| ||| | ||||| ||||||||||    
T  31342716 ttttagttacattttatagtactatctgtaacaatcaaaaagtg 31342673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 30266996 - 30267146
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| |||||||||||||||| ||| ||||||||||||||| ||||| | |||| |||||||||||  ||||||||||||||||||||||| ||||||    
T  30266996 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttac 30267095  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
     ||||||||||||||||||||||||||| |||   ||||| ||||||||||    
T  30267096 caaagagttttagttacattttatagtactatccgtaacaatcaaaaagtg 30267146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 357 - 497
Target Start/End: Original strand, 11017441 - 11017581
Alignment:
Q  357 caacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagc 456  Q
    |||||||||||| ||||||||||| |||||||| |||||||||| ||||||||||||||| |||| |||||||||||||||| ||||||||||||||||     
T  11017441 caacataattgagatctagtaacaattgaaaaccgttactaaataaagaaaattgttactaattaaatttagtaacatttgaccaattgttaggtaaagt 11017540  T
Q  457 ccatgttactaaagagttttagttacattttatagtattat 497  Q
    || |||||||||| || || ||| ||| |||||||||||||    
T  11017541 ccgtgttactaaaaagcttcagtaacactttatagtattat 11017581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 373 - 515
Target Start/End: Original strand, 40016591 - 40016734
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagag 472  Q
    |||||||||||||||| | ||| ||||||||| ||| |||||||||||| ||||||||||||||||| ||||||||||||||| || | |||||||||||    
T  40016591 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatttagtaacatttgaataattgttaggtaaagaccctattactaaagag 40016690  T
Q  473 -ttttagttacattttatagtattatttttaacattcaaaaagt 515  Q
     ||||| ||||||||||| ||||||| | |||||||||||||||    
T  40016691 attttaattacattttattgtattatctgtaacattcaaaaagt 40016734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 366 - 493
Target Start/End: Original strand, 44920951 - 44921077
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| |||||||||||||||| ||| |||||||||| ||||| |||||| |||| |||||||||||  | ||||||||||||||||||| | ||||||    
T  44920951 tgacatttagtaacacttgaaaattgtaactaaatcaaaaaaat-gttactaattaaatttagtaacacctaaacaattgttaggtaaagctcgtgttac 44921049  T
Q  466 taaagagttttagttacattttatagta 493  Q
    ||||||||||||||||||||||||||||    
T  44921050 taaagagttttagttacattttatagta 44921077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 351 - 513
Target Start/End: Original strand, 22966501 - 22966665
Alignment:
Q  351 acactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaa--aattgttactgattatatttagtaacatttgaacaattgtta 448  Q
    ||||||||| |||||||| || |||||||||||||||||| ||||||||| || ||  || | ||||| || | ||||||| |||||| |||||||||||    
T  22966501 acactacaatataattgagatttagtaacacttgaaaactattactaaataaaaaataaaatattactaatgaaatttagttacatttaaacaattgtta 22966600  T
Q  449 ggtaaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaa 513  Q
    |||||||||| ||||||||||||  ||||||||||||||| |||||||| | |||||||| ||||    
T  22966601 ggtaaagcccctgttactaaagacctttagttacattttagagtattatctgtaacattcgaaaa 22966665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 368 - 493
Target Start/End: Original strand, 7718180 - 7718305
Alignment:
Q  368 acatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttacta 467  Q
    |||| |||||| ||||||||| ||| ||||||||||||||| | ||||| |||| |||||||||||  |||||||||||||| ||||| || ||||||||    
T  7718180 acatttagtaatacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacacatgaacaattgttagataaagtccgtgttacta 7718279  T
Q  468 aagagttttagttacattttatagta 493  Q
    |||||||||| |||||||||||||||    
T  7718280 aagagttttaattacattttatagta 7718305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 368 - 516
Target Start/End: Original strand, 15513662 - 15513810
Alignment:
Q  368 acatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttacta 467  Q
    |||| |||||||| || |||| ||| | ||||||||||||| |||||||  ||| |||| |||||| |||||||||||||||||||||| | ||||||||    
T  15513662 acatttagtaacaattaaaaattgtaagtaaatcaagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaagctcgtgttacta 15513761  T
Q  468 aagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    || || |||||||||||||||||||| ||| | || || ||||||||||    
T  15513762 aaaagatttagttacattttatagtactatctgtatcaatcaaaaagtg 15513810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 352 - 507
Target Start/End: Original strand, 41573372 - 41573527
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    |||||||||| |||||| || |||||||| |  |||| ||| ||||||||||||||| ||||||| |||| ||||||||||| || ||||||||||||||    
T  41573372 cactacaacaaaattgagatttagtaacattcaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacagttaaacaattgttaggt 41573471  T
Q  452 aaagcccatgttactaaagagttttagttacattttatagtattatttttaacatt 507  Q
    ||| ||| ||||||||||    || | | ||||||||||||||||||  |||||||    
T  41573472 aaaccccgtgttactaaattacttcaataacattttatagtattattagtaacatt 41573527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 352 - 455
Target Start/End: Complemental strand, 15540420 - 15540317
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaat-tgttactgattatatttagtaacatttgaacaattgttagg 450  Q
    |||||| ||||||||||  | |||||||| ||||||| | |||||||||||  ||||| ||||||| ||||||| ||||||||||| |||||||| ||||    
T  15540420 cactacgacataattgagctttagtaacatttgaaaagtattactaaatcacaaaaatatgttactaattatatctagtaacattt-aacaattgatagg 15540322  T
Q  451 taaag 455  Q
    |||||    
T  15540321 taaag 15540317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 354 - 512
Target Start/End: Original strand, 26734732 - 26734887
Alignment:
Q  354 ctacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaa 453  Q
    ||||| ||||||||| || || ||||| ||||||| |||||   |||||||||||   ||| | |||| |||||| || ||||||| |||||||||||||    
T  26734732 ctacagcataattgagatataataacatttgaaaattgtta---aatcaagaaaaaacttattaattaaatttagcaatatttgaataattgttaggtaa 26734828  T
Q  454 agcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaa 512  Q
    || |||| ||| ||||||| ||||||  ||||||| | ||||||   ||||||||||||    
T  26734829 agtccatattattaaagagctttagtatcattttacaatattatcagtaacattcaaaa 26734887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 361 - 495
Target Start/End: Complemental strand, 27151343 - 27151215
Alignment:
Q  361 ataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccat 460  Q
    |||||||||||||||||| | || |||  ||||||||||||||||||| ||| ||| |||| | ||||| ||| ||| ||||||||     || ||||||    
T  27151343 ataattgacatctagtaataatttaaat-tgttactaaatcaagaaaaatgtcactaattaaaattagtgacacttgtacaattgt-----aacgcccat 27151250  T
Q  461 gttactaaagagttttagttacattttatagtatt 495  Q
    || ||||||||| ||  || |||||||||||||||    
T  27151249 gtcactaaagagcttcggtaacattttatagtatt 27151215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 469
Target Start/End: Complemental strand, 45404807 - 45404711
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaa-aattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaa 469  Q
    ||||||||||| |||| ||| |||||||||| || || |||||||  ||| || | ||||||||||| ||| ||||||||||||||| ||||||||||    
T  45404807 tagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttga-caaatgttaggtaaagcccgtgttactaaa 45404711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 3e-50; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 352 - 513
Target Start/End: Complemental strand, 9633563 - 9633402
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||||||||| || |||||||||||||||||| |||||||||| | |||| ||||||| |||| ||||||| |||||| ||||||||||||||    
T  9633563 cactacaacataattgagatttagtaacacttgaaaactattactaaatcgaaaaaaatgttactaattaaatttagttacatttaaacaattgttaggt 9633464  T
Q  452 aaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaa 513  Q
    ||||||| ||||||||||||||||||||||||||||| || ||||| | |||||||||||||    
T  9633463 aaagcccctgttactaaagagttttagttacattttagagcattatatgtaacattcaaaaa 9633402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 13845985 - 13846135
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| ||| |||||||||||| ||| ||||||||||||||| ||||||| |||| |||||| |||| |||||||||||||||||||||||| ||||||    
T  13845985 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttac 13846084  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||| |||||||||||||||||||||| ||| | ||||| ||||||||||    
T  13846085 taaagtgttttagttacattttatagtactatctgtaacaatcaaaaagtg 13846135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 375 - 516
Target Start/End: Original strand, 2550168 - 2550309
Alignment:
Q  375 gtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagtt 474  Q
    |||||||||||||| ||| ||||||||||||||| ||||||| |||| |||||| |||| |||||||||||||||||||||||  ||||||||||| |||    
T  2550168 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcctgtgttactaaagtgtt 2550267  T
Q  475 ttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||    
T  2550268 ttagttacattttatagtactatttgtaacaatcaaaaagtg 2550309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 1628054 - 1627904
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| |||||||||||||||| ||| ||||||||||||||| | ||||| |||| ||||||||||| |||||||||||||| |||||| || ||||||    
T  1628054 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacacttgaacaattgttaagtaaagtccgtgttac 1627955  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
     ||||||||||||||||||||||||||||||| | ||||| | ||||||||    
T  1627954 aaaagagttttagttacattttatagtattatatgtaacaattaaaaagtg 1627904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 373 - 516
Target Start/End: Complemental strand, 7407854 - 7407711
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagag 472  Q
    |||||||||||||||| ||| ||||||||||||||| | ||||| |||| |||||| |||| |||||||||||||||||||||||| ||||||||||| |    
T  7407854 tagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtg 7407755  T
Q  473 ttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||||||||||||||||||| |||   ||||| ||||||||||    
T  7407754 ttttagttacattttatagtactatcagtaacaatcaaaaagtg 7407711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 352 - 515
Target Start/End: Original strand, 5498457 - 5498619
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||||||||| || |||||||| || |||| ||| ||||||||||||||| ||||||| |||| |||||||||| | ||||||||||||||||    
T  5498457 cactacaacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacttctgaacaattgttaggt 5498556  T
Q  452 aaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagt 515  Q
    ||| || |||||||||||||||||| || | ||||||| ||||||||  ||||||||| |||||    
T  5498557 aaaacctatgttactaaagagttttggtaatattttat-gtattattagtaacattcataaagt 5498619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 378 - 516
Target Start/End: Complemental strand, 2943309 - 2943171
Alignment:
Q  378 acacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagtttta 477  Q
    ||||||||||  ||| | ||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||| |||||| ||||||||||| ||||||    
T  2943309 acacttgaaatttgtaattaaatcaagaaaaatgttactaattaaatttagtaacattcgaacaattgttaggttaagcccgtgttactaaagtgtttta 2943210  T
Q  478 gttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||||||| | ||||| | ||||||||    
T  2943209 gttacattttatagtattatctgtaacaattaaaaagtg 2943171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 373 - 516
Target Start/End: Original strand, 1654576 - 1654719
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagag 472  Q
    |||||||| ||||||| ||| ||||||||||||||| ||||||| |||| |||||| |||| |||||||||||||| ||||||||  ||||| ||||| |    
T  1654576 tagtaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaagtaaagcctgtgttattaaagtg 1654675  T
Q  473 ttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||||||||||||||||||| ||| | ||||| ||||||||||    
T  1654676 ttttagttacattttatagtactatctgtaacaatcaaaaagtg 1654719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 353 - 495
Target Start/End: Original strand, 26707839 - 26707981
Alignment:
Q  353 actacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggta 452  Q
    ||||| |||||||||  ||| ||||||| |||||||  |||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||    
T  26707839 actactacataattgtaatcgagtaacatttgaaaatggttactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggta 26707938  T
Q  453 aagcccatgttactaaagagttttagttacattttatagtatt 495  Q
    ||| |  ||||||||||||| || ||| |||||| ||||||||    
T  26707939 aagtctctgttactaaagaggttcagtaacatttcatagtatt 26707981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 351 - 516
Target Start/End: Complemental strand, 27259567 - 27259411
Alignment:
Q  351 acactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttagg 450  Q
    |||||||||||||||||| || |||||||| ||||||||| ||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||          
T  27259567 acactacaacataattgagatttagtaacaattgaaaactattactaaatcaagcaaaatgttactaattaaatttagtaacatttgaacaatt------ 27259474  T
Q  451 taaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
         ||  ||||||||||||| ||||||||||||||| |||||||| | ||||||||||||||||    
T  27259473 ---tccctttgttactaaagagctttagttacattttagagtattatctgtaacattcaaaaagtg 27259411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 378 - 507
Target Start/End: Original strand, 36035294 - 36035423
Alignment:
Q  378 acacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagtttta 477  Q
    |||||| |||| || |||||||||||||||| |  |||| |||| ||||||||||| ||| |||||||||||||||||| | ||||||||||||| ||||    
T  36035294 acacttcaaaattggtactaaatcaagaaaaataatactaattaaatttagtaacaattgtacaattgttaggtaaagctcgtgttactaaagagcttta 36035393  T
Q  478 gttacattttatagtattatttttaacatt 507  Q
    |||||||||||||||||||| | |||||||    
T  36035394 gttacattttatagtattatatgtaacatt 36035423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 352 - 513
Target Start/End: Original strand, 36035451 - 36035604
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    |||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| |  ||||||| | |||||||        | ||| ||||||||    
T  36035451 cactacaacataattgacatctagtaacacttcaaaattgttactatatcaagaaaaataatactgatcaaatttagt--------atcaaatgttaggt 36035542  T
Q  452 aaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaa 513  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||| | ||||||| |||||    
T  36035543 aaagcccatgttatttaagagttttagctacattttatagtattatatgtaacatttaaaaa 36035604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 441 - 516
Target Start/End: Original strand, 28745043 - 28745118
Alignment:
Q  441 aattgttaggtaaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  28745043 aattgttaggtaaagcacatgttactaaagagttttagttacattttagagtattatttgtaacattcaaaaagtg 28745118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 352 - 490
Target Start/End: Complemental strand, 16457452 - 16457314
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||| ||||| ||  |  |||| ||||||| ||| ||||||||||||||| ||||||| |||| |||||||||||||||| ||||||||||||    
T  16457452 cactacaacatgattgagattcaacaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggt 16457353  T
Q  452 aaagcccatgttactaaagagttttagttacattttata 490  Q
    ||||| | |||||||||| || || ||| ||||||||||    
T  16457352 aaagctcgtgttactaaaaagcttcagtaacattttata 16457314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 374 - 512
Target Start/End: Original strand, 2179926 - 2180066
Alignment:
Q  374 agtaacacttgaaaactgttactaaatcaagaaaat--tgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaaga 471  Q
    |||||||| |||||| ||||||||||| || ||||   ||||| |||||| |||||| | ||||||||||||| || ||||||  || ||||||||||||    
T  2179926 agtaacacctgaaaattgttactaaataaaaaaaaaaatgttaatgattaaatttagaatcatttgaacaattcttgggtaaattccctgttactaaaga 2180025  T
Q  472 gttttagttacattttatagtattatttttaacattcaaaa 512  Q
    | |||||||| |||||||||| |||| ||||||||||||||    
T  2180026 gctttagttatattttatagtgttatctttaacattcaaaa 2180066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 373 - 469
Target Start/End: Complemental strand, 1613313 - 1613217
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaa 469  Q
    |||||||| ||||||| ||| ||||||||||||||| ||||||| | || ||||||||||| |||| ||||| ||||||||||||| ||||||||||    
T  1613313 tagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttgaccaatttttaggtaaagcccctgttactaaa 1613217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 423 - 513
Target Start/End: Original strand, 26735684 - 26735774
Alignment:
Q  423 atttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaa 513  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| || | | |||||| |||||||||||  ||||||| |||||    
T  26735684 atttagtaacatttgaacaattgttaggtaaaatccatgttactaaagagcttcaataacatttcatagtattattagtaacattaaaaaa 26735774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 355 - 507
Target Start/End: Complemental strand, 27713554 - 27713405
Alignment:
Q  355 tacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaa 454  Q
    |||| ||||||||| || |||||||| || |||| ||| ||||| |||| |||   |||||| |||| |||||||||||||| || |||||||||| |||    
T  27713554 tacagcataattgagatttagtaacatttaaaaaatgtaactaattcaaaaaa---gttactaattaaatttagtaacatttaaataattgttaggcaaa 27713458  T
Q  455 gcccatgttactaaagagttttagttacattttatagtattatttttaacatt 507  Q
     || ||||||||||| ||||||||  | ||||||||||||||||  |||||||    
T  27713457 acctatgttactaaatagttttagcaatattttatagtattattagtaacatt 27713405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 390 - 516
Target Start/End: Original strand, 35082993 - 35083119
Alignment:
Q  390 tgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttttagttacattttat 489  Q
    |||||| |||||||||||| ||||| | | || ||||||||| ||||||||||||||||| |||| ||| |||||  || ||| |||||||||| |||||    
T  35082993 tgttacaaaatcaagaaaaatgttagtaaataaatttagtaatatttgaacaattgttagataaaacccttgttagaaatgagctttagttacaatttat 35083092  T
Q  490 agtattatttttaacattcaaaaagtg 516  Q
    |||||||| | | ||||| ||||||||    
T  35083093 agtattatctctgacatttaaaaagtg 35083119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 352 - 444
Target Start/End: Original strand, 36034998 - 36035090
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaatt 444  Q
    ||||||||||||||||||||||| | |||||| |||| || |||||||||||||||| |  |||| |||| ||||||||||| ||| ||||||    
T  36034998 cactacaacataattgacatctaatgacacttcaaaattggtactaaatcaagaaaaataatactaattaaatttagtaacaattgtacaatt 36035090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 469
Target Start/End: Complemental strand, 23358556 - 23358460
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaa-aattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaa 469  Q
    ||||||||||| |||| ||| |||||||||| || || |||||||  ||| || | ||||||||||| ||| ||||||||||||||| ||||||||||    
T  23358556 tagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttga-caaatgttaggtaaagcccgtgttactaaa 23358460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 469
Target Start/End: Complemental strand, 23363377 - 23363281
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaa-aattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaa 469  Q
    ||||||||||| |||| ||| |||||||||| || || |||||||  ||| || | ||||||||||| ||| ||||||||||||||| ||||||||||    
T  23363377 tagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttga-caaatgttaggtaaagcccgtgttactaaa 23363281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 1e-49; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 352 - 516
Target Start/End: Complemental strand, 6801951 - 6801787
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||||  ||| || |||||||||||||||||| |||||||||||| |||| ||||||| |||| ||||||||||| |||||||||||||||||    
T  6801951 cactacaacatagatgagatttagtaacacttgaaaactattactaaatcaataaaaatgttactaattaaatttagtaacagttgaacaattgttaggt 6801852  T
Q  452 aaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||  | ||||||| ||||||||    
T  6801851 aaagcccctgttactaaagagttttagttacattttagagtattagctgtaacattaaaaaagtg 6801787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 352 - 513
Target Start/End: Original strand, 14997600 - 14997761
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||| ||||||||| |||||||| ||| | ||||||||||||| | |||||||||||    
T  14997600 cactacaacatgattgacatctagtgacacttgaaaattattactaattcaagaaaaatgttactggttaaaattagtaacatttgtagaattgttaggt 14997699  T
Q  452 aaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaa 513  Q
    ||| ||||||||||||||||| ||||||||| |||||||||||||  | |||||||||||||    
T  14997700 aaaacccatgttactaaagagctttagttaccttttatagtattaactgtaacattcaaaaa 14997761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 375 - 516
Target Start/End: Complemental strand, 45356210 - 45356069
Alignment:
Q  375 gtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagtt 474  Q
    |||||||||||||| ||| ||||||||||||||| ||||||| |||| |||||| |||| |||||||||||||||||||||||| ||||||||||| |||    
T  45356210 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgtt 45356111  T
Q  475 ttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||||||||||||||||| ||| | ||||| ||||||||||    
T  45356110 ttagttacattttatagtactatctgtaacaatcaaaaagtg 45356069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 349 - 498
Target Start/End: Original strand, 25637620 - 25637769
Alignment:
Q  349 tcacactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgtta 448  Q
    ||||||||| |||  | |||||| |||||||||||||||| ||| ||||||| ||||||| ||||||| |||| |||||| |||| | ||||||||||||    
T  25637620 tcacactactacaataatgacatttagtaacacttgaaaattgtaactaaattaagaaaactgttactaattaaatttagcaacactcgaacaattgtta 25637719  T
Q  449 ggtaaagcccatgttactaaagagttttagttacattttatagtattatt 498  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  25637720 ggtaaagcccgtgttactaaagaattttagttacattttatagtattatt 25637769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 373 - 493
Target Start/End: Original strand, 25638807 - 25638927
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagag 472  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||| |||| |||||| |||| |||||||||||||||||||| ||||||||||||||| |    
T  25638807 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaaacccatgttactaaagtg 25638906  T
Q  473 ttttagttacattttatagta 493  Q
    |||||||||||||||||||||    
T  25638907 ttttagttacattttatagta 25638927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 373 - 493
Target Start/End: Complemental strand, 28249175 - 28249055
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagag 472  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||| |||| |||||| |||| |||||||||||||||||||||||| ||||||||||| |    
T  28249175 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtg 28249076  T
Q  473 ttttagttacattttatagta 493  Q
    |||||||||||||||||||||    
T  28249075 ttttagttacattttatagta 28249055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 17634578 - 17634428
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| |||||||| ||||||| ||| ||||||||||||||| ||||||| |||| ||||| ||||| ||||||||||| |||||||||||| ||||||    
T  17634578 tgacatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttaataacacttgaacaattgataggtaaagcccgtgttac 17634479  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||||  |||||||||||||||||||| ||| | ||||| ||||||||||    
T  17634478 taaagaaatttagttacattttatagtactatctgtaacaatcaaaaagtg 17634428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 352 - 516
Target Start/End: Complemental strand, 5651066 - 5650902
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    |||| ||||||||||||  |  ||||||||||||||||| ||||||||||||||||| ||||||| |||  |||||| ||||||||||||||||||||||    
T  5651066 cactgcaacataattgagtttcagtaacacttgaaaactattactaaatcaagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggt 5650967  T
Q  452 aaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||| ||| |||||| ||| || ||||||| |||||||| ||||||| | ||||||||||| ||||    
T  5650966 aaaacccttgttacaaaaaagctttagttgcattttatggtattatctataacattcaaatagtg 5650902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 19370017 - 19369867
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| ||| |||||||||||| ||| ||||||||||||||| ||||||| |||| |||| | |||| | ||||||||||||| ||||| || ||||||    
T  19370017 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttac 19369918  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||||||||||||||||||| | ||||| | ||||||||    
T  19369917 taaagagttttagttacattttatagtattatctgtaacaattaaaaagtg 19369867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 5528736 - 5528886
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| |||||||||||||||| ||| ||||||||||||||| ||||||| |||| |||||| |||| |  |||||||||||| ||||| |  ||||||    
T  5528736 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacactcaaacaattgttagataaagtctgtgttac 5528835  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||||||||||||||||||||| |||||||| | ||||| | ||||||||    
T  5528836 taaagagttttagttacattttacagtattatctgtaacagttaaaaagtg 5528886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 19448441 - 19448591
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| ||| |||||||||||| ||| ||||||||||||||| ||||||| |||| |||| | |||| | ||||||||||||| ||||| || ||||||    
T  19448441 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttac 19448540  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||| ||||||||||||||| | ||||| | ||||||||    
T  19448541 taaagagttttagttatattttatagtattatctgtaacaattaaaaagtg 19448591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 19532635 - 19532485
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| ||| |||||||||||| ||| ||||||||||||||| ||||||| |||| |||| | |||| | ||||||||||||| ||||| || ||||||    
T  19532635 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttac 19532536  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||| ||||||||||||||| | ||||| | ||||||||    
T  19532535 taaagagttttagttatattttatagtattatctgtaacaattaaaaagtg 19532485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 374 - 505
Target Start/End: Original strand, 29345432 - 29345564
Alignment:
Q  374 agtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaa-gag 472  Q
    ||||||||| ||||| ||| ||||||||||||||| | ||||| |||| |||||||||| ||||||||||||||||||||||||| | ||||||||  |     
T  29345432 agtaacactcgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacctttgaacaattgttaggtaaagcccctcttactaaacaaa 29345531  T
Q  473 ttttagttacattttatagtattatttttaaca 505  Q
     |||||||||||||||||||||||||| |||||    
T  29345532 ctttagttacattttatagtattatttgtaaca 29345564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 411 - 513
Target Start/End: Original strand, 6223439 - 6223541
Alignment:
Q  411 gttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaa 510  Q
    ||||||||||| ||||||||||||||| | |||||||||||||||| | |||||||||||||||||||||||| |||||| |||||| | ||||||||||    
T  6223439 gttactgattaaatttagtaacatttgtaaaattgttaggtaaagcgcgtgttactaaagagttttagttacactttataatattatatgtaacattcaa 6223538  T
Q  511 aaa 513  Q
    |||    
T  6223539 aaa 6223541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 366 - 497
Target Start/End: Original strand, 18766910 - 18767041
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| ||| |||||||||||| ||| ||||||||||||||| | ||| | |||| |||| | |||| |  ||||||||||||||||||  | ||||||    
T  18766910 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatattattaattaaattttgcaacactcaaacaattgttaggtaaagtacgtgttac 18767009  T
Q  466 taaagagttttagttacattttatagtattat 497  Q
    ||||||||||||||||||||||||||||||||    
T  18767010 taaagagttttagttacattttatagtattat 18767041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 352 - 490
Target Start/End: Original strand, 6403572 - 6403710
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||| ||| | || |||||||| ||||||  ||| ||||||| ||||||| ||||||| |||| |||||||||||||||| ||||||||||||    
T  6403572 cactacaacatgattaagatttagtaacaattgaaatttgtaactaaattaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggt 6403671  T
Q  452 aaagcccatgttactaaagagttttagttacattttata 490  Q
    ||||||| ||||| |||| || || ||| ||||||||||    
T  6403672 aaagcccgtgttattaaaaagcttcagtaacattttata 6403710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 351 - 469
Target Start/End: Original strand, 29553607 - 29553725
Alignment:
Q  351 acactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttagg 450  Q
    |||||||||||| ||||| || |||||||| ||||||| ||| || |||||||||||| ||||||| |||| |||||| ||||||||| ||||||||||     
T  29553607 acactacaacatgattgagatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgttactaattaaatttagcaacatttgagcaattgttagt 29553706  T
Q  451 taaagcccatgttactaaa 469  Q
    |||||| | ||||||||||    
T  29553707 taaagcgcgtgttactaaa 29553725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 355 - 472
Target Start/End: Original strand, 5000661 - 5000778
Alignment:
Q  355 tacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaa 454  Q
    |||||||||||||| ||||||| ||| ||||||| |||||||| ||||  |||||||||||| |||| |||||||||||||||| |||| ||||||| ||    
T  5000661 tacaacataattgagatctagttacaattgaaaattgttactacatcatcaaaattgttactaattaaatttagtaacatttgagcaatagttaggtgaa 5000760  T
Q  455 gcccatgttactaaagag 472  Q
     ||  |||||||||||||    
T  5000761 acctgtgttactaaagag 5000778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 354 - 497
Target Start/End: Complemental strand, 31369225 - 31369082
Alignment:
Q  354 ctacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaa 453  Q
    |||||||| | |||| || || ||||| ||||||| ||  ||||||||| || || ||||||| ||||  |||||| |||||| ||||| ||||| ||||    
T  31369225 ctacaacaaagttgagatttaataacatttgaaaaatgaaactaaatcacgataaatgttactaattaagtttagtgacatttaaacaaatgttatgtaa 31369126  T
Q  454 agcccatgttactaaagagttttagttacattttatagtattat 497  Q
    |||  ||||||||||||||||| ||||||||||||||| |||||    
T  31369125 agcttatgttactaaagagtttcagttacattttataggattat 31369082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 505
Target Start/End: Original strand, 31347328 - 31347481
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    |||| |||||| ||||| || |||||||| ||||||| ||| || |||||||||||| || |||| |||| |||||||||||||||| |||||||||| |    
T  31347328 cactgcaacatgattgaaatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgctactaattaaatttagtaacatttgatcaattgttagat 31347427  T
Q  452 aaagcccatgttactaaagagttttagttacattttatagtattatttttaaca 505  Q
    ||| ||  |||||||||  |  || ||| ||||||||||  ||||||| |||||    
T  31347428 aaatcctgtgttactaaccatcttcagtaacattttatatcattatttgtaaca 31347481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 349 - 469
Target Start/End: Original strand, 26173778 - 26173896
Alignment:
Q  349 tcacactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgtta 448  Q
    ||||||||||||| || ||| || ||||||||||| |||| | ||||||||| ||||||  |||||||  |||||||||||||| | || | || |||||    
T  26173778 tcacactacaacaaaaatgagatttagtaacacttaaaaaatattactaaataaagaaa--tgttactatttatatttagtaacttctgtataaatgtta 26173875  T
Q  449 ggtaaagcccatgttactaaa 469  Q
    |||||||||| | ||||||||    
T  26173876 ggtaaagcccgtattactaaa 26173896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 7292813 - 7292870
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaat 409  Q
    |||||||||||||||||||| || ||||||||||||| ||||||| ||||| ||||||    
T  7292813 cactacaacataattgacatttaataacacttgaaaattgttactgaatcatgaaaat 7292870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 7e-48; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 351 - 516
Target Start/End: Original strand, 18308126 - 18308291
Alignment:
Q  351 acactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttagg 450  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||||| | ||| ||||||||  ||||||||||||    
T  18308126 acactaaaacataattgacatctagtaacatttgaaaattgttactaaatcaagaaaaatgttacagattacaattattaacatttctacaattgttagg 18308225  T
Q  451 taaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||  ||||||| ||| | |||||||||||||||||||||| ||| ||||||||||||||||    
T  18308226 taaagcctgtgttactgaagggctttagttacattttatagtattgtttgtaacattcaaaaagtg 18308291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 352 - 498
Target Start/End: Original strand, 12189931 - 12190077
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||||||||| |  ||| |||| || |||| ||| ||||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||    
T  12189931 cactacaacataattgagaattagaaacaattaaaaaatgtaactaaatcaagaaaaatattactaattaaatttagtaacatttgaacaattgttaggt 12190030  T
Q  452 aaagcccatgttactaaagagttttagttacattttatagtattatt 498  Q
    ||||||| |||||||||||||||||||| |  |||||||||||||||    
T  12190031 aaagcccgtgttactaaagagttttagtaattttttatagtattatt 12190077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 351 - 493
Target Start/End: Original strand, 28636881 - 28637023
Alignment:
Q  351 acactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttagg 450  Q
    |||||||||||||||| | ||||||||||| || |||| ||| ||||||||||||||| ||||||| |||  ||||||||||||||||| ||||||||||    
T  28636881 acactacaacataattaagatctagtaacatttaaaaattgtaactaaatcaagaaaaatgttactaattcaatttagtaacatttgaataattgttagg 28636980  T
Q  451 taaagcccatgttactaaagagttttagttacattttatagta 493  Q
    ||||| |  |||| |||||||| ||||||||||||||||||||    
T  28636981 taaagtcactgttgctaaagagatttagttacattttatagta 28637023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 352 - 516
Target Start/End: Complemental strand, 39368761 - 39368596
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    |||| ||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||| |||| | ||||| ||||||  ||||||||||||     
T  39368761 cactgcaacataattgacatctagtaacccatgaaaaatgttactaaatcaagaaaaatgttactaattaaaattagtcacatttatacaattgttaggc 39368662  T
Q  452 aaagcccatgttactaaagagttttagttaca-ttttatagtattatttttaacattcaaaaagtg 516  Q
    ||||| |||| |||||||||| || ||||||| ||||||||||||||   ||||||| ||||||||    
T  39368661 aaagcacatgctactaaagagcttcagttacatttttatagtattatcagtaacatttaaaaagtg 39368596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 51758746 - 51758896
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| |||||||| ||||||| ||| ||||||||||||||| ||||| | |||| |||||| |||| | |||||||| ||||||||||| | | ||||    
T  51758746 tgacatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattattaggtaaagctcgtattac 51758845  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||||||||||||||||||| | ||||| | ||||||||    
T  51758846 taaagagttttagttacattttatagtattatctgtaacaattaaaaagtg 51758896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 352 - 513
Target Start/End: Original strand, 897434 - 897594
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||||||| | || |||| ||| ||||||| ||||||||||| ||||||| |||| || |||| ||||||||||| |||||||||||||||||    
T  897434 cactacaacataattaagatatagttacagttgaaaattgttactaaatgaagaaaaatgttcctaattaaatttagtaacaattgaacaattgttaggt 897533  T
Q  452 aaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaa 513  Q
     |||  ||||||||||||||| | |||||||||||||||  ||||||| ||||||| |||||    
T  897534 -aagttcatgttactaaagagctatagttacattttatacaattatttgtaacattaaaaaa 897594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 366 - 476
Target Start/End: Original strand, 16222771 - 16222881
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| |||||||| ||||||| ||| ||||||||||||||| ||||||| || | ||||||||||| ||||| |||||||||||||||||| ||||||    
T  16222771 tgacatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaaagcccgtgttac 16222870  T
Q  466 taaagagtttt 476  Q
    |||||||||||    
T  16222871 taaagagtttt 16222881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 352 - 458
Target Start/End: Complemental strand, 5911785 - 5911679
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||| |||   || |||||||||||||||| | | ||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||    
T  5911785 cactacaacatgattatgatatagtaacacttgaaaattttaactaaatcaagaaaaatgttactgattaaatttagtaacacttgaacaattgttaggt 5911686  T
Q  452 aaagccc 458  Q
    |||||||    
T  5911685 aaagccc 5911679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 402 - 510
Target Start/End: Original strand, 1843981 - 1844089
Alignment:
Q  402 aagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttttagttacattttatagtattattttt 501  Q
    ||||||| |||||||||||  |||||||||||||||||||||||||||||||| ||||||||||| ||| | |||| || |||||||||||||||| | |    
T  1843981 aagaaaaatgttactgattgaatttagtaacatttgaacaattgttaggtaaaccccatgttactgaagggctttaattgcattttatagtattatctgt 1844080  T
Q  502 aacattcaa 510  Q
    |||| ||||    
T  1844081 aacaatcaa 1844089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 351 - 467
Target Start/End: Original strand, 17112903 - 17113019
Alignment:
Q  351 acactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttagg 450  Q
    |||||||||||||||||| ||||||||| | ||||||| ||||||||||||||||||| |  ||||  ||| |||| |||||| |||||||||||||||     
T  17112903 acactacaacataattgaaatctagtaataattgaaaattgttactaaatcaagaaaaatagtactagttaaattttgtaacacttgaacaattgttagt 17113002  T
Q  451 taaagcccatgttacta 467  Q
    |||||| ||||||||||    
T  17113003 taaagctcatgttacta 17113019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 37097447 - 37097371
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaa 442  Q
    |||||| |||||||||||||||| ||| ||||||||||||||| |||||||||| | ||||||||||||||||||||    
T  37097447 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactgataaaatttagtaacatttgaacaa 37097371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 394 - 469
Target Start/End: Original strand, 3399643 - 3399718
Alignment:
Q  394 actaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaa 469  Q
    ||||||||| ||||| ||||||| |||| ||||||||||||||||||||||||||||||||  | |||||||||||    
T  3399643 actaaatcatgaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaaatctatgttactaaa 3399718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 373 - 455
Target Start/End: Original strand, 15214327 - 15214409
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaag 455  Q
    |||||||||||||||| ||  ||||||||||||||| | ||||| |||| ||||||||| ||||||||||||||| |||||||    
T  15214327 tagtaacacttgaaaattgcaactaaatcaagaaaaattttactaattaaatttagtaatatttgaacaattgttgggtaaag 15214409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 382 - 477
Target Start/End: Original strand, 13208621 - 13208716
Alignment:
Q  382 ttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagtttta 477  Q
    ||||||| ||| | ||||| ||||||| ||||||| |||| |||||||| || |||||| ||||||||||||| ||| ||||||||||| ||||||    
T  13208621 ttgaaaattgtaattaaattaagaaaaatgttactaattaaatttagtaccacttgaaccattgttaggtaaaacccgtgttactaaagtgtttta 13208716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 394 - 471
Target Start/End: Original strand, 15204615 - 15204692
Alignment:
Q  394 actaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaaga 471  Q
    ||||||||||||||| |||| || | || ||||||||||| ||||||||||||||||||||  ||||  |||||||||    
T  15204615 actaaatcaagaaaaatgttgctaactaaatttagtaacacttgaacaattgttaggtaaaatccattctactaaaga 15204692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 4e-46; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 373 - 515
Target Start/End: Original strand, 16734805 - 16734947
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagag 472  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||||| ||||||||||| |    
T  16734805 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggtaaagcccgtgttactaaagtg 16734904  T
Q  473 ttttagttacattttatagtattatttttaacattcaaaaagt 515  Q
    ||||||||||||||||||||| ||| | ||||| |||||||||    
T  16734905 ttttagttacattttatagtactatctgtaacaatcaaaaagt 16734947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 12591826 - 12591976
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| |||||||||||||||| ||| ||||||||||||||| ||||| | |||| ||||||||||  | |||||||||||||||||||||| ||||||    
T  12591826 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaagcccgtgttac 12591925  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||||| ||||||||||||| | ||||| | ||||||||    
T  12591926 taaagagttttagttacaatttatagtattatctgtaacaattaaaaagtg 12591976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 342 - 516
Target Start/End: Complemental strand, 14669477 - 14669303
Alignment:
Q  342 cactatctcacactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaaca 441  Q
    |||| ||||||||||| |||  | |||||| ||| |||||||||||| ||| ||||||||||||||| ||||||| |||| |||| | |||| | ||| |    
T  14669477 cactttctcacactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaata 14669378  T
Q  442 attgttaggtaaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||    
T  14669377 attgttaggtaaagtccgtgttactaaagagttttagttacattttatagtattatttgtaacaattaaaaagtg 14669303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 356 - 516
Target Start/End: Complemental strand, 23904469 - 23904309
Alignment:
Q  356 acaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaag 455  Q
    ||||||||||||| ||||||||||||||||||| || |||||||| |||||||  |||||| | |  |||||||||||||||||||||||||||||||||    
T  23904469 acaacataattgagatctagtaacacttgaaaattgctactaaatgaagaaaaaagttactaaatcaatttagtaacatttgaacaattgttaggtaaag 23904370  T
Q  456 cccatgttactaaagagttttagttacattttatagtattat-ttttaacattcaaaaagtg 516  Q
    ||| | |||| |||||| |||| ||||| ||||||||||||| | |||||||||||||||||    
T  23904369 cccctcttacaaaagaggttta-ttacactttatagtattatctcttaacattcaaaaagtg 23904309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 355 - 487
Target Start/End: Complemental strand, 9631273 - 9631141
Alignment:
Q  355 tacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaa 454  Q
    |||||||||||||| || |||||||||||||||||| ||||||||||||||| |  |||||| | || |||||||||||||||||||||||||||| | |    
T  9631273 tacaacataattgagatttagtaacacttgaaaactattactaaatcaagaagaacgttactaagtaaatttagtaacatttgaacaattgttaggcata 9631174  T
Q  455 gcccatgttactaaagagttttagttacatttt 487  Q
    |||| |||||||| |||||||||||||||||||    
T  9631173 gcccctgttactatagagttttagttacatttt 9631141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 373 - 493
Target Start/End: Complemental strand, 11936867 - 11936747
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagag 472  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||| |||| |||||| |||| ||||||||||||||| |||||||| ||||||||||| |    
T  11936867 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtg 11936768  T
Q  473 ttttagttacattttatagta 493  Q
    |||||||||||||||||||||    
T  11936767 ttttagttacattttatagta 11936747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 373 - 516
Target Start/End: Original strand, 15361715 - 15361858
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagag 472  Q
    ||||||||||| |||| ||| ||||||||||||||| ||||||| |||| |||||| |||| |||||||||||||||||||||||  ||||||||||  |    
T  15361715 tagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatg 15361814  T
Q  473 ttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||||||||||||||||||| ||| | ||||| ||||||||||    
T  15361815 ttttagttacattttatagtactatctgtaacaatcaaaaagtg 15361858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 373 - 497
Target Start/End: Original strand, 6684094 - 6684217
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagag 472  Q
    ||||||||||| |||| ||| ||| ||||||||||| ||||||| |||| ||||||||||| | ||||| ||||||||||||| ||||||||||||||||    
T  6684094 tagtaacacttaaaaattgtaacttaatcaagaaaaatgttactaattaaatttagtaacactcgaaca-ttgttaggtaaagtccatgttactaaagag 6684192  T
Q  473 ttttagttacattttatagtattat 497  Q
    |||||||||||||||||||||||||    
T  6684193 ttttagttacattttatagtattat 6684217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 351 - 497
Target Start/End: Complemental strand, 23264620 - 23264472
Alignment:
Q  351 acactacaacataattgacatctagtaacact--tgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgtta 448  Q
    |||||||||||||||||| ||||||||| | |  |||||| ||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||    
T  23264620 acactacaacataattgagatctagtaagaatattgaaaattgttactaaatcaagaaaattgttactaattaaatttagtaacattcgaacaattgtta 23264521  T
Q  449 ggtaaagcccatgttactaaagagttttagttacattttatagtattat 497  Q
    ||||||  || ||||||||||||| || ||  | | |||||||||||||    
T  23264520 ggtaaaatccgtgttactaaagagcttcagcaaaactttatagtattat 23264472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 17719830 - 17719680
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| ||| |||||||||||| ||| ||||||||||||||| ||||||| ||||  ||| | |||| | ||||||||||||| ||||| || ||||||    
T  17719830 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaatttttgcaacactcgaacaattgttagataaagtccgtgttac 17719731  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||||| ||||||||||||| | ||||| | ||||||||    
T  17719730 taaagagttttagttacaatttatagtattatctgtaacaattaaaaagtg 17719680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 351 - 489
Target Start/End: Complemental strand, 29668039 - 29667899
Alignment:
Q  351 acactacaacataattgacatctagtaacacttgaaaactgttactaaatcaa--gaaaattgttactgattatatttagtaacatttgaacaattgtta 448  Q
    |||||||||||||||||| |||| |||||| ||||||| ||| || |||||||  ||||| ||||||| |||| ||||||||||||||||||||||||||    
T  29668039 acactacaacataattgagatcttgtaacaattgaaaattgtaacgaaatcaaaagaaaaatgttactaattaaatttagtaacatttgaacaattgtta 29667940  T
Q  449 ggtaaagcccatgttactaaagagttttagttacattttat 489  Q
    ||||||||   ||||| ||||||| |||||| |||||||||    
T  29667939 ggtaaagcttgtgttattaaagagatttagtaacattttat 29667899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 385 - 493
Target Start/End: Complemental strand, 11948835 - 11948727
Alignment:
Q  385 aaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttttagttacat 484  Q
    |||| ||| ||||||||||||||| ||||||| |||| |||||| |||| ||||||||||||||| |||||||| ||||||||||| |||||||||||||    
T  11948835 aaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacat 11948736  T
Q  485 tttatagta 493  Q
    |||||||||    
T  11948735 tttatagta 11948727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 352 - 513
Target Start/End: Complemental strand, 4485686 - 4485525
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||||||| | |||||||| || ||||||| ||  ||||||||||| ||| || |||| |||| ||||||||| ||||||| |||||||||||    
T  4485686 cactacaacataattaagatctagtatcagttgaaaaatgcaactaaatcaaggaaaatggtactaattaaatttagtaatatttgaataattgttaggt 4485587  T
Q  452 aaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaa 513  Q
    |||| || ||||| |||| ||||||||| ||| | ||||| ||||||  ||||||| |||||    
T  4485586 aaagtccgtgttattaaatagttttagtaacaatctatagaattattagtaacattaaaaaa 4485525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 352 - 497
Target Start/End: Original strand, 1942548 - 1942693
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||||||| | || | |||||| |||| || ||| ||||||||||||||| | |||||||| | ||||| |||||||||| |||||| |||||    
T  1942548 cactacaacataattaagatttggtaacatttgataattgtaactaaatcaagaaaaatattactgataaaatttaataacatttgagcaattgctaggt 1942647  T
Q  452 aaagcccatgttactaaagagttttagttacattttatagtattat 497  Q
    ||| ||  ||||| |||| |  ||||||||||||||||||||||||    
T  1942648 aaaacctttgttattaaatatctttagttacattttatagtattat 1942693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 394 - 505
Target Start/End: Original strand, 10070676 - 10070786
Alignment:
Q  394 actaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttttagttacattttatagta 493  Q
    |||||||||| |||||||||||| |||| ||||| ||||| |  || |||||||| |||||| || |||||||||| |||||||||||||||||||||||    
T  10070676 actaaatcaacaaaattgttactaattaaatttaataacactcaaataattgttacgtaaagtccgtgttactaaa-agttttagttacattttatagta 10070774  T
Q  494 ttatttttaaca 505  Q
    |||||| |||||    
T  10070775 ttatttgtaaca 10070786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 374 - 516
Target Start/End: Original strand, 34374826 - 34374970
Alignment:
Q  374 agtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaac--aattgttaggtaaagcccatgttactaaaga 471  Q
    ||||||| || |||| ||| | ||||||||||||| ||||||| ||||||||| |||||||||||||  |||||||||| |||  |  ||||||||||||    
T  34374826 agtaacaattaaaaaatgtaattaaatcaagaaaaatgttactaattatattttgtaacatttgaacaaaattgttaggcaaaatctgtgttactaaaga 34374925  T
Q  472 gttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||| ||| | |||||||||||||||   ||||||||| ||||||    
T  34374926 gtttgagtaatattttatagtattatgagtaacattcataaagtg 34374970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 354 - 479
Target Start/End: Complemental strand, 10935901 - 10935776
Alignment:
Q  354 ctacaacataattgacatctagtaacacttgaaaac-tgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggta 452  Q
    |||||||| |||||| ||||| ||||  |||||||  | ||||||||||| ||||| ||||||| |||||||  ||||||||||||||||||||||||||    
T  10935901 ctacaacaaaattgagatctaataacgtttgaaaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggta 10935802  T
Q  453 aagcccatgttactaaagagttttagt 479  Q
    || | |||| || ||| ||||||||||    
T  10935801 aaactcatg-taataaggagttttagt 10935776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 367 - 464
Target Start/End: Original strand, 15690432 - 15690529
Alignment:
Q  367 gacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgtta 464  Q
    ||||| |||||||| ||||||| ||| ||||||||||||||| ||||||| |||| ||||||| ||| |  |||||||||||| ||||| ||||||||    
T  15690432 gacatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtgacactcaaacaattgttagctaaagtccatgtta 15690529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 361 - 452
Target Start/End: Original strand, 4591138 - 4591229
Alignment:
Q  361 ataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggta 452  Q
    |||||| |||| |||||||| ||||||| | ||||||||||||||||| |||||| ||||| | | | |||| |||| ||||||||||||||    
T  4591138 ataattaacatttagtaacatttgaaaattattactaaatcaagaaaaatgttaccgattaaaatcaataacctttgtacaattgttaggta 4591229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 472
Target Start/End: Complemental strand, 30481311 - 30481229
Alignment:
Q  390 tgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagag 472  Q
    ||||||||||||||||||| |||| || |||| || |||||||| |||||||| | |||| |||||  |||||||||||||||    
T  30481311 tgttactaaatcaagaaaaatgttgctaattaaatctagtaacaattgaacaaattttagataaagatcatgttactaaagag 30481229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 6673737 - 6673675
Alignment:
Q  354 ctacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttact 416  Q
    ||||||||||||| | || |||||||| ||||||| ||| ||||||||||||||| |||||||    
T  6673737 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttact 6673675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 352 - 471
Target Start/End: Complemental strand, 28736729 - 28736608
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatattta--gtaacatttgaacaattgttag 449  Q
    |||||||||| | |||| ||||||||||| || |||| || || ||||||| ||||| |  |||||||||||| ||  |  ||||||||||||||||||     
T  28736729 cactacaacaaagttgaaatctagtaacatttaaaaaatgctattaaatcacgaaaaatagtactgattatatatatagcgacatttgaacaattgttaa 28736630  T
Q  450 gtaaagcccatgttactaaaga 471  Q
    ||||||||  ||| ||||||||    
T  28736629 gtaaagcctttgtaactaaaga 28736608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 469
Target Start/End: Complemental strand, 2668553 - 2668457
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaa-aattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaa 469  Q
    ||||||||||| |||| ||| |||||||||| || || |||||||  ||| || | ||||||||||| ||| ||||||||||||||| ||||||||||    
T  2668553 tagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttga-caaatgttaggtaaagcccgtgttactaaa 2668457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 498
Target Start/End: Complemental strand, 8496706 - 8496625
Alignment:
Q  418 attatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttttagttacatt-ttatagtattatt 498  Q
    |||||||||| |||||||||||||||||| ||  |||  | ||||||||||||||||| ||| ||||| || ||||||||||    
T  8496706 attatatttaataacatttgaacaattgtcagacaaaatctatgttactaaagagtttcagtaacattattttagtattatt 8496625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 469
Target Start/End: Original strand, 14003873 - 14003969
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaa-aattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaa 469  Q
    ||||||||||| |||| ||| |||||||||| || || |||||||  ||| || | ||||||||||| ||| ||||||||||||||| ||||||||||    
T  14003873 tagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttga-caaatgttaggtaaagcccgtgttactaaa 14003969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 469
Target Start/End: Complemental strand, 27970017 - 27969921
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaa 469  Q
    |||||||| ||||||| ||| || ||| |||||||  |||||||  ||  |||||| ||||||| ||||| |||||||||||| | |||||||||||    
T  27970017 tagtaacatttgaaaattgtaaccaaagcaagaaatatgttactatttcaatttagcaacatttcaacaaatgttaggtaaagtctatgttactaaa 27969921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 469
Target Start/End: Complemental strand, 6346980 - 6346862
Alignment:
Q  351 acactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaa-aattgttactgattatatttagtaacatttgaacaattgttag 449  Q
    ||||| |||||||  ||| || ||||||||| | |||| ||| |||||||||| || || |||||||  ||| |||| |||||||||||  ||| |||||    
T  6346980 acactgcaacatatatgagatttagtaacacattaaaattgtaactaaatcaaaaataaatgttactatttaaattttgtaacatttgataaat-gttag 6346882  T
Q  450 gtaaagcccatgttactaaa 469  Q
    |||||||| |||||||||||    
T  6346881 gtaaagcctatgttactaaa 6346862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 455
Target Start/End: Original strand, 2941043 - 2941088
Alignment:
Q  410 tgttactgattatatttagtaacatttgaacaattgttaggtaaag 455  Q
    ||||||| ||||| ||||||||||||||| ||| ||||||||||||    
T  2941043 tgttactaattatgtttagtaacatttgagcaaatgttaggtaaag 2941088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 475
Target Start/End: Complemental strand, 11655098 - 11655033
Alignment:
Q  410 tgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttt 475  Q
    ||||||| |||||||  |||||||||| ||||||| ||||||||| |  |||||||||||| ||||    
T  11655098 tgttactaattatatcgagtaacatttaaacaattattaggtaaaacatatgttactaaagggttt 11655033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 4e-46; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 17037536 - 17037686
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| ||||||||||||||||  || ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| |  ||||||    
T  17037536 tgacatttagtaacacttgaaaatcgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtcagtgttac 17037635  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||||||||||||||||||| | ||||| | ||||||||    
T  17037636 taaagagttttagttacattttatagtattatctgtaacaattaaaaagtg 17037686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 373 - 516
Target Start/End: Complemental strand, 5079164 - 5079021
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagag 472  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||| |||| |||||| |||| |||||||||||||||||||||||| ||||||||||| |    
T  5079164 tagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtg 5079065  T
Q  473 ttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||||||||||||||||||| ||| | ||||| ||||||||||    
T  5079064 ttttagttacattttatagtactatctgtaacaatcaaaaagtg 5079021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 352 - 516
Target Start/End: Original strand, 19984974 - 19985138
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    |||||||||||||||   | ||||||||||| |||||  || ||||||||||| ||| ||||||| |||| ||||||||||||||||| |||||||||||    
T  19984974 cactacaacataattatgaactagtaacactcgaaaatggtaactaaatcaaggaaaatgttactaattagatttagtaacatttgaataattgttaggt 19985073  T
Q  452 aaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||    
T  19985074 aaagtccaggttactaaagagttttagttacattttatagtattatatgtaataatcaaaaagtg 19985138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 351 - 516
Target Start/End: Original strand, 30786245 - 30786410
Alignment:
Q  351 acactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttagg 450  Q
    |||||||||||||||| | ||||||||||||||||||| ||| ||| ||||||||||| |||||||||||  ||||||||||||||||| ||||||||||    
T  30786245 acactacaacataattaagatctagtaacacttgaaaattgtaacttaatcaagaaaaatgttactgattcaatttagtaacatttgaataattgttagg 30786344  T
Q  451 taaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||  || |||||||||| || |||||| |||||||||  |||||||| ||||| | ||||||||    
T  30786345 taaatgccttgttactaaaaagatttagtcacattttatgttattatttgtaacaataaaaaagtg 30786410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 352 - 513
Target Start/End: Original strand, 31571008 - 31571173
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacattt----gaacaattgtt 447  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||||||||| | |||||||||| |    | |||||||||    
T  31571008 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacatatatatgtacaattgtt 31571107  T
Q  448 aggtaaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaa 513  Q
    ||||||| ||||||||||||||||| ||||| | |||| |||||||||||   |||||||||||||    
T  31571108 aggtaaaacccatgttactaaagagctttagatccattatatagtattatcggtaacattcaaaaa 31571173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 351 - 516
Target Start/End: Complemental strand, 12042299 - 12042133
Alignment:
Q  351 acactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttagg 450  Q
    |||||||||||||||| | ||| ||||| | ||||||| ||| ||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  12042299 acactacaacataattaagatccagtaatatttgaaaattgtaactaaatcaagaaaaatgttactgattcaatttagtaacatttgaacaattgttagg 12042200  T
Q  451 taaag-cccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||   | | ||||||||||||||||||||||||||||| |||||||| ||| | | ||||||||    
T  12042199 taaagaaacctattactaaagagttttagttacattttatattattatttgtaataataaaaaagtg 12042133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 373 - 516
Target Start/End: Original strand, 7410824 - 7410967
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagag 472  Q
    |||||||| || |||| ||| |||||||||| |||| ||||||| |||| |||||| |||| |||||||||||||||||||||||| ||||||||||| |    
T  7410824 tagtaacatttcaaaattgtaactaaatcaaaaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtg 7410923  T
Q  473 ttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||||||||  |||| ||||| ||||||||||    
T  7410924 ttttagttacattttatagtacaatttgtaacaatcaaaaagtg 7410967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 23679434 - 23679584
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| ||| |||||||||||| ||| ||||||||||||||| ||||| | |||| |||| | |||||| |||||||| |||| |||||  | ||||||    
T  23679434 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaattttgcaacattcgaacaattattagataaagttcgtgttac 23679533  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||||||||||||||||||||| ||||| | ||||||||    
T  23679534 taaagagttttagttacattttatagtattatttgtaacaattaaaaagtg 23679584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 23855377 - 23855227
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| ||| |||||||||||| ||| ||||||||||||||| ||||| | |||| |||| | |||||| |||||||| |||| |||||  | ||||||    
T  23855377 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaattttgcaacattcgaacaattattagataaagttcgtgttac 23855278  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||||||||||||||||||||| ||||| | ||||||||    
T  23855277 taaagagttttagttacattttatagtattatttgtaacaattaaaaagtg 23855227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 352 - 469
Target Start/End: Complemental strand, 9354510 - 9354393
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||| ||||| || |||||||| ||||||| ||| ||| ||||||||||| ||||||| |||| ||||| |||||||||| ||||||||||||    
T  9354510 cactacaacatgattgagatttagtaacaattgaaaattgtaactgaatcaagaaaaatgttactaattaaatttaataacatttgagcaattgttaggt 9354411  T
Q  452 aaagcccatgttactaaa 469  Q
    ||||||||||||||||||    
T  9354410 aaagcccatgttactaaa 9354393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 352 - 469
Target Start/End: Complemental strand, 9333682 - 9333565
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||| ||||| || | |||||| ||||||| ||| || |||||||||||| ||||||| |||| |||||||||||||||| ||||||||||||    
T  9333682 cactacaacatgattgagattttgtaacaattgaaaattgtaacaaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggt 9333583  T
Q  452 aaagcccatgttactaaa 469  Q
    |||| | |||||||||||    
T  9333582 aaagtcgatgttactaaa 9333565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 366 - 465
Target Start/End: Complemental strand, 31069069 - 31068971
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| ||||||||||| |||| ||| ||||||||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||||||| ||||||    
T  31069069 tgacatttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaaca-ttgaacaattgttaggtaaagcccgtgttac 31068971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 350 - 512
Target Start/End: Complemental strand, 38450089 - 38449930
Alignment:
Q  350 cacactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttag 449  Q
    |||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||| ||       ||| | | ||||||||||| | |||||||||    
T  38450089 cacactacaacataattgacatctagtaacacatgaaaattgttaccaaatcaagaaaaatg-------ttaaaatcagtaacatttgtataattgttag 38449997  T
Q  450 gtaaagcccatgttactaaagagtt----ttagttacattttatagtattatttttaacattcaaaa 512  Q
    ||||||| |||||||||||| || |    ||||||||||||||| ||||||| | ||||||| ||||    
T  38449996 gtaaagctcatgttactaaacagctttaattagttacattttatggtattatatgtaacattaaaaa 38449930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 352 - 474
Target Start/End: Original strand, 10869417 - 10869537
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||||||||| ||||||  ||| || |||| ||| ||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  10869417 cactacaacataattgagatctagatacaattaaaaattgt-actaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggt 10869515  T
Q  452 aaagcccatgttactaaagagtt 474  Q
    | | ||| | |||||||||||||    
T  10869516 atatccc-tcttactaaagagtt 10869537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 497
Target Start/End: Original strand, 42076078 - 42076171
Alignment:
Q  404 gaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttttagttacattttatagtattat 497  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||||| || || ||  | |||||||||||||||    
T  42076078 gaaaattgttactaattaaatttagtaacatttgaacaattgttagataaagtccatgttactaaaaagcttcaggaatattttatagtattat 42076171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 402 - 497
Target Start/End: Original strand, 37233061 - 37233156
Alignment:
Q  402 aagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttttagttacattttatagtattat 497  Q
    |||||||  |||||| |||| |||||||||||||||| ||||||||||||| || || |||||||||| ||||| ||| |||||||||||||||||    
T  37233061 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaacattttatagtattat 37233156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 18191970 - 18191886
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacattt 436  Q
    |||||||| |||||||| || |||||||| ||||||| ||| ||||||| ||||||| ||||||| |||| ||||||||||||||    
T  18191970 cactacaaaataattgagatttagtaacaattgaaaattgtaactaaattaagaaaaatgttactaattaaatttagtaacattt 18191886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 495
Target Start/End: Complemental strand, 40402088 - 40401987
Alignment:
Q  394 actaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttttagttacattttatagta 493  Q
    ||||||| ||||||| ||||||| |||| ||||||| || |||||||||||||||||||||| |  |||| ||||| || || ||  |||||||||||||    
T  40402088 actaaataaagaaaaatgttactaattaaatttagttacgtttgaacaattgttaggtaaagtctgtgttgctaaaaagcttcagcaacattttatagta 40401989  T
Q  494 tt 495  Q
    ||    
T  40401988 tt 40401987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 373 - 469
Target Start/End: Complemental strand, 19615132 - 19615036
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaa-aattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaa 469  Q
    ||||||||||| |||| ||| |||||||||| || || |||||||  ||| || | ||||||||||| ||| ||||||||||||||||||||||||||    
T  19615132 tagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttga-caaatgttaggtaaagcccatgttactaaa 19615036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 16411573 - 16411652
Alignment:
Q  355 tacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatt 435  Q
    |||||||||| |||  | |||||||| ||||||| | ||||||||||| ||||| ||||||||||||||| ||||||||||    
T  16411573 tacaacataactgagctttagtaacatttgaaaa-tattactaaatcacgaaaaatgttactgattatatctagtaacatt 16411652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 42076045 - 42076092
Alignment:
Q  351 acactacaacataattgacatctagtaacacttgaaaactgttactaa 398  Q
    |||||||||||||||||| ||||||||||| ||||||| |||||||||    
T  42076045 acactacaacataattgagatctagtaacaattgaaaattgttactaa 42076092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 352 - 469
Target Start/End: Original strand, 15160366 - 15160483
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaa-aattgttactgattatatttagtaacatttgaacaattgttagg 450  Q
    ||||||||||||  ||| || ||||||||||| |||| ||| | |||||||| || || |||||||  ||| || | |||||||||||  ||| ||||||    
T  15160366 cactacaacatatatgagatttagtaacacttcaaaattgtaaataaatcaaaaacaaatgttactatttaaatcttgtaacatttgataaat-gttagg 15160464  T
Q  451 taaagcccatgttactaaa 469  Q
    |||||||||||||||||||    
T  15160465 taaagcccatgttactaaa 15160483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 475
Target Start/End: Complemental strand, 11833354 - 11833242
Alignment:
Q  360 cataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagccca 459  Q
    ||||||||| || |||||||| |||| || ||| ||||||||| ||||| ||||| | ||||||| ||| ||||||  || ||||||   |||||| |||    
T  11833354 cataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagcaacattaaaataattgt---gtaaaggcca 11833258  T
Q  460 tgttactaaagagttt 475  Q
    | ||||||||||||||    
T  11833257 ttttactaaagagttt 11833242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 17535350 - 17535411
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgtt 413  Q
    |||||||||| |||||| ||||||||||  ||||||| ||| ||||||||||||||| ||||    
T  17535350 cactacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 17535411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 469
Target Start/End: Complemental strand, 30655300 - 30655180
Alignment:
Q  349 tcacactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaa-aattgttactgattatatttagtaacatttgaacaattgtt 447  Q
    |||||||||||||||  ||| || ||||||||||| |||| ||| |||||||||| || || |||||||  ||| || | |||||||||| | || ||||    
T  30655300 tcacactacaacatatatgagatttagtaacacttcaaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacatttg-ataaatgtt 30655202  T
Q  448 aggtaaagcccatgttactaaa 469  Q
    ||||||||||  ||||||||||    
T  30655201 aggtaaagccggtgttactaaa 30655180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 435
Target Start/End: Original strand, 14117275 - 14117356
Alignment:
Q  354 ctacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatt 435  Q
    |||||||||| |||| ||  ||||||| ||| ||| ||||||||||| |||||||||||| ||  ||  |||||||||||||    
T  14117275 ctacaacatatttgaaattaagtaacatttggaaaatgttactaaatgaagaaaattgttgctattttaatttagtaacatt 14117356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 2e-42; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 352 - 488
Target Start/End: Complemental strand, 4881190 - 4881054
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||| | |||||||||||    
T  4881190 cactacaacataattgacatccagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaatttagtaatatttgtataattgttaggt 4881091  T
Q  452 aaagcccatgttactaaagagttttagttacatttta 488  Q
    |||| || ||||||||||| | ||||||| |||||||    
T  4881090 aaagtccgtgttactaaagtgctttagttgcatttta 4881054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 47066141 - 47065991
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| |||||||||||||||| ||| ||||||||||||||| ||||| | |||| |||||||||||  ||||||||||||||||||||||| ||||||    
T  47066141 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttac 47066042  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
     ||||||||||||||||||||||||||| |||   ||||| ||||||||||    
T  47066041 caaagagttttagttacattttatagtactatccgtaacaatcaaaaagtg 47065991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 375 - 516
Target Start/End: Original strand, 43600269 - 43600410
Alignment:
Q  375 gtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagtt 474  Q
    |||||||||||||| ||| ||||||||||||||| ||||||| |||| |||||| || | |||||||||||||||||||||||| ||||||||||| |||    
T  43600269 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaaacttgaacaattgttaggtaaagcccgtgttactaaagtgtt 43600368  T
Q  475 ttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||||||||||||||||| ||| | ||||| ||||||||||    
T  43600369 ttagttacattttatagtactatctgtaacaatcaaaaagtg 43600410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 360 - 488
Target Start/End: Complemental strand, 4904253 - 4904125
Alignment:
Q  360 cataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagccca 459  Q
    ||||||| ||||| |||||||||| |||| ||||||||||||| ||||| |||||||||||| ||||||||||||||| |||||||||||||||||| |     
T  4904253 cataattaacatccagtaacacttaaaaattgttactaaatcatgaaaaatgttactgattaaatttagtaacatttgtacaattgttaggtaaagcact 4904154  T
Q  460 tgttactaaagagttttagttacatttta 488  Q
    ||||||||||| | |||||||||||||||    
T  4904153 tgttactaaagtgctttagttacatttta 4904125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 1685059 - 1684909
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| ||| |||||||||||| ||| ||||||||||||||| ||||||| |||| |||| | |||| | ||||||||||||| ||||| || ||||||    
T  1685059 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttac 1684960  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||||| ||||||||||||| | ||||| | ||||||||    
T  1684959 taaagagttttagttacaatttatagtattatctgtaacaattaaaaagtg 1684909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 53300344 - 53300494
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| |||||||||||||||| ||| | ||||||||||||| ||||| | |||| |||||||||||  | ||||||||||||||||||||| ||||||    
T  53300344 tgacatttagtaacacttgaaaattgtaattaaatcaagaaaaatgttagtaattaaatttagtaacacctaaacaattgttaggtaaagcccgtgttac 53300443  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
     ||||||||||||||||||||||| ||| |||   ||||| ||||||||||    
T  53300444 caaagagttttagttacattttatcgtactatccgtaacaatcaaaaagtg 53300494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 352 - 497
Target Start/End: Complemental strand, 24559116 - 24558971
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||| ||||||||||| || |||||||| || |||| ||| ||||||||||||||| ||||||| |||| |||||||||||||||||| ||||||||||    
T  24559116 cactagaacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacgattgttaggt 24559017  T
Q  452 aaagcccatgttactaaagagttttagttacattttatagtattat 497  Q
    || | |  |||||||||||| ||||||| | |||||||||||||||    
T  24559016 aacggctgtgttactaaagaattttagtgatattttatagtattat 24558971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 352 - 497
Target Start/End: Complemental strand, 37751110 - 37750966
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||||||||||||||||| |||||||  |||||| ||| |||||||||| ||||| |||||| |||| | | |||||||||||  |||||||||| |    
T  37751110 cactacaacataattgacatccagtaacatatgaaaattgtcactaaatcaaaaaaat-gttactaattaaaatcagtaacatttgcgcaattgttagat 37751012  T
Q  452 aaagcccatgttactaaagagttttagttacattttatagtattat 497  Q
    |||||| ||||||||||  || ||||||||||||||||||||||||    
T  37751011 aaagccaatgttactaagaagctttagttacattttatagtattat 37750966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 366 - 516
Target Start/End: Original strand, 1152037 - 1152187
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| ||| |||||||||||| ||| ||||||| ||||||| ||||||| |||| |||| | |||| |  |||||||||||| ||||| || ||||||    
T  1152037 tgacatttagcaacacttgaaaattgtaactaaattaagaaaaatgttactaattaaattttgcaacactcaaacaattgttagataaagtccgtgttac 1152136  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||||| |||||| |||||| | ||||| | ||||||||    
T  1152137 taaagagttttagttacagtttataatattatctgtaacaattaaaaagtg 1152187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 394 - 497
Target Start/End: Complemental strand, 21539350 - 21539248
Alignment:
Q  394 actaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttttagttacattttatagta 493  Q
    ||||||||||| ||| |||||||||||| |||||||||||||| |||||||||||| | ||| || ||||||||||||| |||||||||||||| |||||    
T  21539350 actaaatcaaggaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttttagta 21539252  T
Q  494 ttat 497  Q
    ||||    
T  21539251 ttat 21539248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 441 - 516
Target Start/End: Complemental strand, 27739807 - 27739732
Alignment:
Q  441 aattgttaggtaaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| | ||| | ||||||||||    
T  27739807 aattgttaggtaaagcccatgttactgaagagctttagttacattttatagtattatctgtaagaatcaaaaagtg 27739732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 352 - 417
Target Start/End: Complemental strand, 4923754 - 4923689
Alignment:
Q  352 cactacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactg 417  Q
    ||||||||||||||| ||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  4923754 cactacaacataattaacatccagtaacacttaaaaattgttactaaatcaagaaaaatgttactg 4923689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 382 - 451
Target Start/End: Original strand, 48464049 - 48464118
Alignment:
Q  382 ttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggt 451  Q
    ||||||| ||||||||||| || |||| ||||||| |||| |||||||||||||||||||||||||||||    
T  48464049 ttgaaaattgttactaaataaataaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 48464118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 355 - 433
Target Start/End: Complemental strand, 26075368 - 26075290
Alignment:
Q  355 tacaacataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaaca 433  Q
    |||||||||||||| ||||| ||||| ||||||| |||||||| ||||||||||| |||||| | || |||||||||||    
T  26075368 tacaacataattgaaatctaataacaattgaaaattgttactagatcaagaaaatggttactaagtaaatttagtaaca 26075290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 469
Target Start/End: Complemental strand, 8573262 - 8573166
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaa-aattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaa 469  Q
    ||||||||||| |||| ||| |||||||||| || || |||||||  ||| || | ||||||||||| ||| ||||||||||||||| ||||||||||    
T  8573262 tagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttga-caaatgttaggtaaagcccgtgttactaaa 8573166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 469
Target Start/End: Complemental strand, 8575381 - 8575285
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaa-aattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaa 469  Q
    ||||||||||| |||| ||| |||||||||| || || |||||||  ||| || | ||||||||||| ||| ||||||||||||||| ||||||||||    
T  8575381 tagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttga-caaatgttaggtaaagcccgtgttactaaa 8575285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 516
Target Start/End: Original strand, 21317488 - 21317581
Alignment:
Q  423 atttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||| |||||||||||||||||| |  ||||||||||  | || | | ||||||||| ||||||    ||||||||||||||||    
T  21317488 atttagtaacatttcaacaattgttaggtaaaggctgtgttactaaaatgcttcactaacattttattgtattaccaataacattcaaaaagtg 21317581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 385 - 448
Target Start/End: Complemental strand, 26075285 - 26075222
Alignment:
Q  385 aaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgtta 448  Q
    |||| ||||| || |||||||||||||||||| | || |||| |||||||| ||||||||||||    
T  26075285 aaaattgttattagatcaagaaaattgttactaagtaaattttgtaacattcgaacaattgtta 26075222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 485
Target Start/End: Original strand, 32514521 - 32514588
Alignment:
Q  418 attatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttttagttacatt 485  Q
    |||||||  ||||||||||||| ||||||||| |||||||  ||| |||||||||||| ||| |||||    
T  32514521 attatatacagtaacatttgaagaattgttagataaagccattgtaactaaagagtttcagtaacatt 32514588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 445
Target Start/End: Original strand, 45641640 - 45641723
Alignment:
Q  360 cataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattg 445  Q
    ||||||||| ||||||||||| || |||| || ||| |  ||| ||||| ||||||| ||||||| |||||||||||| |||||||    
T  45641640 cataattgagatctagtaacatttaaaaaatggtacca--tcatgaaaaatgttactaattatatctagtaacatttgcacaattg 45641723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 475
Target Start/End: Complemental strand, 18941733 - 18941656
Alignment:
Q  398 aatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagagttt 475  Q
    ||||| ||||| |||| || |||||||  | |||||||||||||||||||| ||||||| | |||||| |||| ||||    
T  18941733 aatcacgaaaaatgttgctaattatatccaataacatttgaacaattgttaagtaaagctcttgttaccaaagtgttt 18941656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 854 - 704
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| ||| |||||||||||| ||| ||||||||||||||||||||||| |||| |||| | |||| | ||||||||||||| ||||| |||||||||    
T  854 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttac 755  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||||||||||||||||||| | ||||| | ||||||||    
T  754 taaagagttttagttacattttatagtattatctataacaattaaaaagtg 704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 40805 - 40655
Alignment:
Q  366 tgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttac 465  Q
    |||||| ||| || ||||||||| ||| ||||||||||||||||||||||| |||| |||| | |||| | ||||||||||||| ||||| |||||||||    
T  40805 tgacatttagcaatacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttac 40706  T
Q  466 taaagagttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    |||||||||||||||||||||||||||||||| | ||||| | ||||||||    
T  40705 taaagagttttagttacattttatagtattatctgtaacaattaaaaagtg 40655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 373 - 516
Target Start/End: Original strand, 6699 - 6842
Alignment:
Q  373 tagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagcccatgttactaaagag 472  Q
    ||||||||||| |||| ||| ||||||||||||||| ||||||| |||| |||||| |||| |||||||||||||||||||||||  ||||||||||  |    
T  6699 tagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatg 6798  T
Q  473 ttttagttacattttatagtattatttttaacattcaaaaagtg 516  Q
    ||||||||||||||||||||| ||| | ||||| ||||||||||    
T  6799 ttttagttacattttatagtactatctgtaacaatcaaaaagtg 6842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 359 - 493
Target Start/End: Complemental strand, 446397 - 446263
Alignment:
Q  359 acataattgacatctagtaacacttgaaaactgttactaaatcaagaaaattgttactgattatatttagtaacatttgaacaattgttaggtaaagccc 458  Q
    |||||||||| ||||||||||| | ||| | ||| |||||||||   ||||||||||  |||| |||| ||||||||||||||||||||||| |||| ||    
T  446397 acataattgagatctagtaacaatcgaagattgtaactaaatcatacaaattgttaccaattaaatttggtaacatttgaacaattgttaggaaaagtcc 446298  T
Q  459 atgttactaaagagttttagttacattttatagta 493  Q
    || ||||||||||| |||||| ||| |||||||||    
T  446297 atattactaaagagctttagtaacactttatagta 446263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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