View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13489_high_2 (Length: 478)
Name: NF13489_high_2
Description: NF13489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13489_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 3448813 - 3448381
Alignment:
| Q |
1 |
ctaataagtttctacaccatagtatgtagtttttggttacatcatagtatatgagaaaacatgtcttatataattgattattaaattaacttcaaccagt |
100 |
Q |
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| T |
3448813 |
ctaataagtttctacaccatagtatgtagtttttggttacatcatagtatatgagaaaacatgtcttatataattgattattaaattaacttcaaccagt |
3448714 |
T |
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| Q |
101 |
ggtacagggaatgccctcatatttagtttattgggtggttgaaattaatgtcgagaagttatccatgattagagttgtttgtttctctctaattttggtg |
200 |
Q |
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| T |
3448713 |
g-tatagggcatgccctcatatttagtttattgggtggttgaaattaatgtctagaagttatccatgattagagttgtttgtttctctctaattttggtg |
3448615 |
T |
|
| Q |
201 |
tgaaccgtaaatcctatttttgaatttaaggcattcgattagggttttgtgtgtgcaatttcgataagtttgttgcctaaattcttggtaaacaaaatat |
300 |
Q |
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| T |
3448614 |
tgaaccgtaaatcctatttttgaatttaaggcattcgattagggttttgtgtgtgcaatttcgataagtttgttgcctaaattcttggtaaacaaaatat |
3448515 |
T |
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| Q |
301 |
tggtttgttgtgatgagtttgctactttggatagaaacatgcatcatcataattttggaacaactgaacaagtgtttttgatcaagggctgtgtcttgta |
400 |
Q |
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| T |
3448514 |
tggtttgttgtgatgagtttgctactttggatagaaacatgcatcatcataaatttggaacaactgaacaagtgtttttgatcaagggctgtgtcttgta |
3448415 |
T |
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| Q |
401 |
ttggaataagttctaccttttattttttagaaac |
434 |
Q |
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| T |
3448414 |
ttggaataagttctaccttttattttttagaaac |
3448381 |
T |
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