View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13489_high_4 (Length: 255)
Name: NF13489_high_4
Description: NF13489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13489_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 49684273 - 49684516
Alignment:
| Q |
12 |
tcatcagcacttgtcataggatccaaaggttagccaaaaacttatgtatactctattagtaatgtgacataccttgaaaattggttgttttttctttatt |
111 |
Q |
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| T |
49684273 |
tcatcagcacttgtcataggatccaaaggttagccaaaaacttatgtatactctattagtaatgtgacatatcttgaaaattggttgttttttctttatt |
49684372 |
T |
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| Q |
112 |
gatttatcttgttgtatggatgcaagttcctgactgataattctttgagtcgaattgaccaattcaaaactggatactgaacttcaaaatttatatatta |
211 |
Q |
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| T |
49684373 |
gatttatcttgttgtgtggatgcaagttcctgactgataattctttgagtcgaattgaccaattcaaaactggatactgaacttcgaaatttacatatta |
49684472 |
T |
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| Q |
212 |
gcatattccttaactatgttttctccaattgcataattaaagtt |
255 |
Q |
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| T |
49684473 |
gcatattccttaactatgttttctctaattgcataattaaagtt |
49684516 |
T |
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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 246
Target Start/End: Original strand, 20059440 - 20059584
Alignment:
| Q |
100 |
tttttctttattgatttatcttgtt--gtatggatgcaagttcctgactgataattctttgagtcgaattgaccaattcaaaactggatactgaacttca |
197 |
Q |
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| T |
20059440 |
tttttctttattgatttaactttttttgtatggatgcaggtttctgactaataattctttga-----atggaccgattcaagactggatactgaacttca |
20059534 |
T |
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| Q |
198 |
aaatttatatattagcata-ttccttaactatgttttctccaattgcata |
246 |
Q |
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| T |
20059535 |
aaattaacatgttagcatatttcacttaccatgctttctccaattgcata |
20059584 |
T |
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