View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13489_low_3 (Length: 510)
Name: NF13489_low_3
Description: NF13489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13489_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 54 - 507
Target Start/End: Original strand, 51151631 - 51152084
Alignment:
| Q |
54 |
gtgttcttagaaacccatttgaaagtttcatctctctgtctgtgaaagttccctcctttttgtcagagaaaacaacaacacattcctgaatctatcaagc |
153 |
Q |
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| T |
51151631 |
gtgttcttagaaacccatttgaaagtttcatctctctgtctgtgaaagttccctcctttttgtcagagaaaacaacaacacattcctgaatctatcaagc |
51151730 |
T |
|
| Q |
154 |
aagagcctttctttcttgcttcattttctaaaggaaaaaaccaaagaagataagggttagtgttaaagatggggtgtgttgcctcaaaactagaggaaga |
253 |
Q |
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| T |
51151731 |
aagagcctttctttcttgcttcattttctaaaggaaaaaaccaaagaagataagggttactgttaaagatggggtgtgttgcctcaaaactagaggaaga |
51151830 |
T |
|
| Q |
254 |
agaggaagtagtagctatttgtagagagagaaaacgtcagctgaaactagctgtagagaaaagatatgcacttgctgaagctcattgtaaatattttcac |
353 |
Q |
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| T |
51151831 |
agaggaagtagtagctatttgtagagagagaaaacgtcagctgaaactagctgtagagaaaagatatgcacttgctgaagctcattgtaaatattttcac |
51151930 |
T |
|
| Q |
354 |
tctttgaatgctgtagctgctgctattaagctttttgttgcaagacattcttcaccttcttcacctttccttataactttccctcctaagggtcttgacc |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51151931 |
tctttgaatgctgtagctgctgctattaagctttttgttgcaagacattcttcaccttcttcacctttccttataactttccctcctaagggtcttgacc |
51152030 |
T |
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| Q |
454 |
cttctccttctcattcatctgctgaaaatgtcataaataaccctatgcttctcc |
507 |
Q |
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| T |
51152031 |
cttctccttctcattcatctgctgaaaatgtcataaataaccctatgtttctcc |
51152084 |
T |
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