View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13489_low_5 (Length: 390)
Name: NF13489_low_5
Description: NF13489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13489_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 382
Target Start/End: Complemental strand, 54878618 - 54878256
Alignment:
| Q |
20 |
cattgtgttccttcaagtgctttataaaccaacgtgttcttcgcaacaacgagtttcgttgtttcaggaagagtttttcgaagttcttgaaattgtttta |
119 |
Q |
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| T |
54878618 |
cattgtgttccttcaagtgctttataaaccaacgtgttcttcgcaacaacgagtttcgttgtttcaggaagagtttttcgaagttcttgaaattgtttta |
54878519 |
T |
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| Q |
120 |
cggtgaagcctttgtagttgattccggcgaggaggtaacagttttcaagttgttcttttacggtttcaactgtttcttctttctttgtgcgtgaaattgc |
219 |
Q |
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| T |
54878518 |
cggtgaagcctttgtagttgattccggcgaggaggtaacagttttcaagttgttcttttacggtttcaactgtttcttctttctttgtgcgtgaaattgc |
54878419 |
T |
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| Q |
220 |
ggcgttgatggataaacggtgggttttggaaatgggtctatgtttgtatgatgtgggtgggttgaatgggttaatgggtcgggttaggatttgaaaagat |
319 |
Q |
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| T |
54878418 |
ggcgttgatggataaacggtgggttttggaaatgggtctatgtttgtatgatgtgggtgggttgaatgggttaatgggtcgggttaggatttgaaaagat |
54878319 |
T |
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| Q |
320 |
tgggttttggtggatggaagagagaagctgagtagagttgcagtagcttccatggtgatgatg |
382 |
Q |
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| T |
54878318 |
tgggttttggtggatggaagagagaagctgagtagagttgcagtagcttccatggtgatgatg |
54878256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 56015503 - 56015582
Alignment:
| Q |
110 |
aattgttttacggtgaagcctttgtagttgattccggcgaggaggtaacagttttcaagttgttcttttacggtttcaac |
189 |
Q |
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| T |
56015503 |
aattgtttcacggtgaagcctttgtagttgatttcggcgagaaggtaacaattttcaagttgttcttttacggtttcaac |
56015582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 31 - 189
Target Start/End: Complemental strand, 23273503 - 23273345
Alignment:
| Q |
31 |
ttcaagtgctttataaaccaacgtgttcttcgcaacaacgagtttcgttgtttcaggaagagtttttcgaagttcttgaaattgttttacggtgaagcct |
130 |
Q |
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||||||||| ||||| |||||| |||||||| |||||||| || || ||||||| |||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
23273503 |
ttcaagtgcattatacaccaacatgttcttcacaacaacgggtgtcattgtttctggaagagtttttcgtagttcttgaaattgtttcacggtgaagcct |
23273404 |
T |
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| Q |
131 |
ttgtagttgattccggcgaggaggtaacagttttcaagttgttcttttacggtttcaac |
189 |
Q |
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| T |
23273403 |
ttgtagttgattccggcgagaaggtaacagttttcaagctgttcttttttggtttcaac |
23273345 |
T |
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