View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_high_25 (Length: 448)
Name: NF1348_high_25
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 7955362 - 7955267
Alignment:
| Q |
13 |
aatattgaggggagcgataaatactaactaaatatatattttttaatgcaaataatattaataacaatcacagtaaacacgttgtactcaatttac |
108 |
Q |
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| T |
7955362 |
aatattgaggggagcgataaatactaactaaatatatattttttaatgcaaataatattaataacaattacagtaaacacgttgtactcaatttac |
7955267 |
T |
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Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 276 - 349
Target Start/End: Complemental strand, 7955096 - 7955023
Alignment:
| Q |
276 |
caaaaaccctaaattgacaaaattcccaaatcattcaaccctagattcattacctgtgtatgtggtgttgttct |
349 |
Q |
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| T |
7955096 |
caaaaaccctaaattgacaaaattcccaaaccattcaaccctagattcattacctgtgtatgtggtgttgttct |
7955023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 7955212 - 7955182
Alignment:
| Q |
163 |
gctatctagaacaaacaataagaaaaatctc |
193 |
Q |
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| T |
7955212 |
gctatctagaacaaacaataagaaaaatctc |
7955182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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