View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_high_28 (Length: 441)
Name: NF1348_high_28
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 30 - 429
Target Start/End: Complemental strand, 28549548 - 28549145
Alignment:
| Q |
30 |
ataattgaatccatgctagtagatcaaccgacaatatagctaatatgtagtatattaaatggctatgttcattgtgaacaaattagaaatgttagctagg |
129 |
Q |
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| T |
28549548 |
ataattgaatccatgctagtagatcaaccgacaatatagctaatatgtagtatattaaatggctatgttcattgtgaacaaattagaaatgttagctagg |
28549449 |
T |
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| Q |
130 |
ttgtgttgtattccccaactgcatgcatgtttctggttatatata--------atgtaataatatatgcatgaaaaatgtttcgaacgtacaaattaaag |
221 |
Q |
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| T |
28549448 |
ttgtgttgtattccccaactgcatgcatgtttctggttatatatatatatataatgtaataatatatgcatgaaaaatgtttcgaacgtacaaattaaag |
28549349 |
T |
|
| Q |
222 |
cacaatttgttatcaagagctataacagctactccacaactacctttttatgttgcactgtaaactgcaaggttgtatgtaatacatctgtgagaatcag |
321 |
Q |
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| T |
28549348 |
cacaatttgttgtcaagagctataacagctactccacaactacctttttatgttgcactgtaaactgcaaggt----tgtaatacatctgtgagaatcag |
28549253 |
T |
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| Q |
322 |
agtggagtcgaccaattaattggttggatcaccaaagctaggtttttgtaaaagaacattttatgataaattgtaaaatgttattttttacctttagttc |
421 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28549252 |
agtgaagtcgaccaattaattggttggatcaccaaagctaggtttttgtaaaagaacattttatgataaattgtaaaatgttattttttacctttagttc |
28549153 |
T |
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| Q |
422 |
attatttt |
429 |
Q |
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| T |
28549152 |
attatttt |
28549145 |
T |
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