View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_high_30 (Length: 439)
Name: NF1348_high_30
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 30 - 431
Target Start/End: Original strand, 6434582 - 6434983
Alignment:
| Q |
30 |
ctattgtcacaaatttaatatgagatttctcttttagtttttcgcccaatattgctcctaacacatcgttaatgtcacctacaacattgtagcaaaaaca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6434582 |
ctattgtcacaaatttaatatgagatttctcttttattttcccgcccaatattgctcctaacacatcgttaatgtcacctacaacattgtagcaaaaaca |
6434681 |
T |
|
| Q |
130 |
tatagaaaactgtatatcataaattttatgattgtgagaactggttatgatggttcaaacttcaaagaacgggagctaagaaacctagtctaaacacaaa |
229 |
Q |
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|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
6434682 |
taaagaaaactgtaaatcataaattttatgattgtgagaactggttatgatggttcaaacttcagagaacgggagctaagaaatctagtctaaacacaaa |
6434781 |
T |
|
| Q |
230 |
tcaatatttgaggttccctctttatgtcaagaaaaaacatcaattatgaaaaattaaatactggaaaatccagtcactatgcaagccttcaaaagaagag |
329 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6434782 |
tcaaaatttgaggttccctctttatgtcaagaaaaaacatcaattatgaaaaattaaatactggaaaatccagtcactatgcaagccttcaaaagaagag |
6434881 |
T |
|
| Q |
330 |
tgaccttaaaagtcactggccttttgctgacaaaatgtcctttaaaaaggtgtcaaagaacattagttttccatctaaccacaaaactgacactttcatc |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6434882 |
tgaccttaaaagtcactggccttttgctgacaaaatgtcctttaaaaaggtgtcaaagaacattagctttccatctaaccacaaaactgacactttcatc |
6434981 |
T |
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| Q |
430 |
tc |
431 |
Q |
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|| |
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| T |
6434982 |
tc |
6434983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 297
Target Start/End: Complemental strand, 44185674 - 44185513
Alignment:
| Q |
136 |
aaactgtatatcataaatttt-atgattgtgagaactggttatgatggttcaaacttcaaagaacgggagctaagaaacctagtctaaacacaaatcaat |
234 |
Q |
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| T |
44185674 |
aaactgtaaatcctaaatttttatgatagtcaaaactgtttaagatggttcaaacttcaaagaaatgaagctaagaaaccaagtctaaacactgataaaa |
44185575 |
T |
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| Q |
235 |
atttgaggttccctctttatgtcaagaa-aaaacatcaattatgaaaaattaaatactggaaaa |
297 |
Q |
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| T |
44185574 |
acttgagattcc--ccttaggtcaagaacaaaacttcaattatgaataattaaatgttggaaaa |
44185513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 384
Target Start/End: Complemental strand, 28735576 - 28735470
Alignment:
| Q |
278 |
aaaaattaaatactggaaaatccagtcactatgcaagccttcaaaagaagagtgaccttaaaagtcactggccttttgctgacaaaatgtcctttaaaaa |
377 |
Q |
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|||||| |||| |||| ||||||||| ||| || ||||||||||||| ||| ||| |||||||| ||| ||| ||||||||| | || ||||||||| |
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| T |
28735576 |
aaaaatcaaatgctgggaaatccagtacatataaaaaccttcaaaagaagcgtggcctaaaaagtcattggtcttctgctgacaataggttctttaaaaa |
28735477 |
T |
|
| Q |
378 |
ggtgtca |
384 |
Q |
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||||||| |
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| T |
28735476 |
ggtgtca |
28735470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 29684775 - 29684832
Alignment:
| Q |
272 |
attatgaaaaattaaatactggaaaatccagtcactatgcaagccttcaaaagaagag |
329 |
Q |
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||||||||||| |||| ||||||| |||||||| |||||||||||||||||||||| |
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| T |
29684775 |
attatgaaaaactaaacactggaagttccagtcataatgcaagccttcaaaagaagag |
29684832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 13282940 - 13282988
Alignment:
| Q |
274 |
tatgaaaaattaaatactggaaaatccagtcactatgcaagccttcaaa |
322 |
Q |
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||||||||||||||| ||||||||| | ||||| ||| ||||||||||| |
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| T |
13282940 |
tatgaaaaattaaatgctggaaaattctgtcacaatgaaagccttcaaa |
13282988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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